Published in J Bacteriol on June 01, 2004
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol (2006) 40.15
Identification of genes encoding the folate- and thiamine-binding membrane proteins in Firmicutes. J Bacteriol (2008) 1.19
A survey of orphan enzyme activities. BMC Bioinformatics (2007) 1.18
Thiamin (vitamin B1) biosynthesis and regulation: a rich source of antimicrobial drug targets? Int J Biol Sci (2011) 1.03
Thiamine is synthesized by a salvage pathway in Rhizobium leguminosarum bv. viciae strain 3841. J Bacteriol (2006) 0.97
The riboswitch regulates a thiamine pyrophosphate ABC transporter of the oral spirochete Treponema denticola. J Bacteriol (2011) 0.95
Isolation and characterization of new thiamine-deregulated mutants of Bacillus subtilis. J Bacteriol (2005) 0.94
The vitamin B1 metabolism of Staphylococcus aureus is controlled at enzymatic and transcriptional levels. PLoS One (2009) 0.92
The GTPase, CpgA(YloQ), a putative translation factor, is implicated in morphogenesis in Bacillus subtilis. Mol Genet Genomics (2006) 0.91
The CbiB protein of Salmonella enterica is an integral membrane protein involved in the last step of the de novo corrin ring biosynthetic pathway. J Bacteriol (2007) 0.86
Mutagenesis studies on TenA: a thiamin salvage enzyme from Bacillus subtilis. Bioorg Chem (2007) 0.86
Common ancestry and novel genetic traits of Francisella novicida-like isolates from North America and Australia as revealed by comparative genomic analyses. Appl Environ Microbiol (2011) 0.85
The thiamine kinase (YcfN) enzyme plays a minor but significant role in cobinamide salvaging in Salmonella enterica. J Bacteriol (2007) 0.84
Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources. BMC Genomics (2012) 0.79
Evidence that TP_0144 of Treponema pallidum is a thiamine-binding protein. J Bacteriol (2015) 0.78
Thiamin biosynthesis in prokaryotes. Arch Microbiol (1999) 2.91
Biosynthesis of the thiazole moiety of thiamin pyrophosphate (vitamin B1). Biochemistry (2003) 1.70
Crystal structure of 4-methyl-5-beta-hydroxyethylthiazole kinase from Bacillus subtilis at 1.5 A resolution. Biochemistry (2000) 1.56
Mechanistic studies on thiamin phosphate synthase: evidence for a dissociative mechanism. Biochemistry (2001) 1.53
Characterization of thiL, encoding thiamin-monophosphate kinase, in Salmonella typhimurium. J Biol Chem (1997) 1.39
thiK and thiL loci of Escherichia coli. J Bacteriol (1982) 1.39
Crystal structure of 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase from Salmonella typhimurium at 2.3 A resolution. Structure (2002) 1.39
Isolation and characterization of a thiamin pyrophosphokinase gene, THI80, from Saccharomyces cerevisiae. J Biol Chem (1993) 1.27
Characterization of two kinases involved in thiamine pyrophosphate and pyridoxal phosphate biosynthesis in Bacillus subtilis: 4-amino-5-hydroxymethyl-2methylpyrimidine kinase and pyridoxal kinase. J Bacteriol (2004) 1.25
The crystal structure of yeast thiamin pyrophosphokinase. Structure (2001) 1.08
The RAST Server: rapid annotations using subsystems technology. BMC Genomics (2008) 175.18
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol (2006) 40.15
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res (2005) 29.61
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Res (2006) 11.15
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res (2006) 9.85
Protein tyrosine phosphatases in the human genome. Cell (2004) 8.09
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res (2006) 7.93
Multiple high-throughput analyses monitor the response of E. coli to perturbations. Science (2007) 5.87
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol Syst Biol (2006) 5.20
The genome sequence and structure of rice chromosome 1. Nature (2002) 4.99
Genome structure of the legume, Lotus japonicus. DNA Res (2008) 4.93
Two-component system VraSR positively modulates the regulation of cell-wall biosynthesis pathway in Staphylococcus aureus. Mol Microbiol (2003) 4.77
Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res (2006) 4.25
The ERGO genome analysis and discovery system. Nucleic Acids Res (2003) 3.89
Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12. Mol Microbiol (2002) 3.68
High-throughput, quantitative analyses of genetic interactions in E. coli. Nat Methods (2008) 3.17
eSGA: E. coli synthetic genetic array analysis. Nat Methods (2008) 3.01
Experimental and computational assessment of conditionally essential genes in Escherichia coli. J Bacteriol (2006) 2.93
Bcl-2 and Bcl-XL regulate proinflammatory caspase-1 activation by interaction with NALP1. Cell (2007) 2.79
Responses of the central metabolism in Escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts. J Bacteriol (2003) 2.77
Complete reconstitution of the human coenzyme A biosynthetic pathway via comparative genomics. J Biol Chem (2002) 2.73
Top down characterization of larger proteins (45 kDa) by electron capture dissociation mass spectrometry. J Am Chem Soc (2002) 2.72
Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation. Genome Res (2007) 2.67
Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli. Mol Microbiol (2002) 2.50
Three-dimensional structural view of the central metabolic network of Thermotoga maritima. Science (2009) 2.33
The structural and biochemical foundations of thiamin biosynthesis. Annu Rev Biochem (2009) 2.32
HemK, a class of protein methyl transferase with similarity to DNA methyl transferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination. Proc Natl Acad Sci U S A (2002) 2.31
Crystal structure of mammalian cysteine dioxygenase. A novel mononuclear iron center for cysteine thiol oxidation. J Biol Chem (2006) 2.30
Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures. Appl Environ Microbiol (2004) 2.28
Essential genes on metabolic maps. Curr Opin Biotechnol (2006) 2.18
Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout. Biotechnol Bioeng (2003) 2.17
Update on the Keio collection of Escherichia coli single-gene deletion mutants. Mol Syst Biol (2009) 2.11
NAD biosynthesis: identification of the tryptophan to quinolinate pathway in bacteria. Chem Biol (2003) 2.11
Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family. J Biol Chem (2006) 2.10
Automatic detection of subsystem/pathway variants in genome analysis. Bioinformatics (2005) 2.10
A putative Fe2+-bound persulfenate intermediate in cysteine dioxygenase. Biochemistry (2008) 2.09
Identification and molecular characterization of the Mg2+ stimulon of Escherichia coli. J Bacteriol (2003) 2.06
Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab Eng (2005) 2.05
Inhibitors of pantothenate kinase: novel antibiotics for staphylococcal infections. Antimicrob Agents Chemother (2003) 2.00
Reconstitution of ThiC in thiamine pyrimidine biosynthesis expands the radical SAM superfamily. Nat Chem Biol (2008) 1.96
A new thiamin salvage pathway. Nat Chem Biol (2007) 1.88
Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate. Metab Eng (2004) 1.88
Genome-wide analyses revealing a signaling network of the RcsC-YojN-RcsB phosphorelay system in Escherichia coli. J Bacteriol (2003) 1.87
Structure and lytic activity of a Bacillus anthracis prophage endolysin. J Biol Chem (2005) 1.79
Analysis of metabolic and physiological responses to gnd knockout in Escherichia coli by using C-13 tracer experiment and enzyme activity measurement. FEMS Microbiol Lett (2003) 1.76
Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. FEMS Microbiol Lett (2003) 1.70
Biosynthesis of the thiazole moiety of thiamin pyrophosphate (vitamin B1). Biochemistry (2003) 1.70
Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli. Mol Microbiol (2002) 1.67
KEGG-based pathway visualization tool for complex omics data. In Silico Biol (2005) 1.64
Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J Bacteriol (2006) 1.59
The antibiotic activity of N-pentylpantothenamide results from its conversion to ethyldethia-coenzyme a, a coenzyme a antimetabolite. J Biol Chem (2002) 1.55
13C NMR snapshots of the complex reaction coordinate of pyridoxal phosphate synthase. Nat Chem Biol (2008) 1.54
Structure of human phosphopantothenoylcysteine synthetase at 2.3 A resolution. Structure (2003) 1.54
Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism. Mol Syst Biol (2009) 1.52
General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG. J Biol Chem (2004) 1.50
Saccharomyces cerevisiae THI4p is a suicide thiamine thiazole synthase. Nature (2011) 1.50
Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation. PLoS Comput Biol (2010) 1.48
Top-down MS, a powerful complement to the high capabilities of proteolysis proteomics. FEBS J (2007) 1.47
The protein network of bacterial motility. Mol Syst Biol (2007) 1.45
Structure of the Escherichia coli ThiS-ThiF complex, a key component of the sulfur transfer system in thiamin biosynthesis. Biochemistry (2006) 1.42
Top down characterization of secreted proteins from Mycobacterium tuberculosis by electron capture dissociation mass spectrometry. J Am Soc Mass Spectrom (2003) 1.41
Reconstitution of a new cysteine biosynthetic pathway in Mycobacterium tuberculosis. J Am Chem Soc (2005) 1.40
B1500, a small membrane protein, connects the two-component systems EvgS/EvgA and PhoQ/PhoP in Escherichia coli. Proc Natl Acad Sci U S A (2007) 1.40
Structure of oxalate decarboxylase from Bacillus subtilis at 1.75 A resolution. Biochemistry (2002) 1.39
Crystal structure of 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase from Salmonella typhimurium at 2.3 A resolution. Structure (2002) 1.39
Structural biology of enzymes of the thiamin biosynthesis pathway. Curr Opin Struct Biol (2003) 1.37
Structural and mechanistic studies on ThiO, a glycine oxidase essential for thiamin biosynthesis in Bacillus subtilis. Biochemistry (2003) 1.35
Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist. Structure (2007) 1.33
Crystal structure and mechanism of tryptophan 2,3-dioxygenase, a heme enzyme involved in tryptophan catabolism and in quinolinate biosynthesis. Biochemistry (2007) 1.29
Biosynthesis of thiamin thiazole in eukaryotes: conversion of NAD to an advanced intermediate. J Am Chem Soc (2007) 1.29
Biosynthesis of the thiamin pyrimidine: the reconstitution of a remarkable rearrangement reaction. Org Biomol Chem (2004) 1.26
A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies. DNA Res (2005) 1.26
Characterization of two kinases involved in thiamine pyrophosphate and pyridoxal phosphate biosynthesis in Bacillus subtilis: 4-amino-5-hydroxymethyl-2methylpyrimidine kinase and pyridoxal kinase. J Bacteriol (2004) 1.25
Reconstitution and biochemical characterization of a new pyridoxal-5'-phosphate biosynthetic pathway. J Am Chem Soc (2005) 1.25
Structural characterization of the regulatory proteins TenA and TenI from Bacillus subtilis and identification of TenA as a thiaminase II. Biochemistry (2005) 1.25
Ribosome binding proteins YhbH and YfiA have opposite functions during 100S formation in the stationary phase of Escherichia coli. Genes Cells (2005) 1.24