Published in Theor Appl Genet on June 16, 2004
De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas). BMC Genomics (2010) 3.32
Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. BMC Genomics (2011) 2.53
Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics (2005) 2.40
Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim. BMC Genomics (2010) 2.01
Genome-wide distribution and organization of microsatellites in plants: an insight into marker development in Brachypodium. PLoS One (2011) 1.96
SSR mining in coffee tree EST databases: potential use of EST-SSRs as markers for the Coffea genus. Mol Genet Genomics (2006) 1.92
Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species. BMC Plant Biol (2009) 1.74
Complete switchgrass genetic maps reveal subgenome collinearity, preferential pairing and multilocus interactions. Genetics (2010) 1.54
Novel and Stress Relevant EST Derived SSR Markers Developed and Validated in Peanut. PLoS One (2015) 1.46
Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa. BMC Plant Biol (2007) 1.32
Development and validation of genic-SSR markers in sesame by RNA-seq. BMC Genomics (2012) 1.32
Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers. Funct Integr Genomics (2005) 1.30
Genotyping-by-Sequencing in Plants. Biology (Basel) (2012) 1.25
Large-scale development of expressed sequence tag-derived simple sequence repeat markers and diversity analysis in Arachis spp. Mol Breed (2011) 1.24
Identification, characterization and utilization of unigene derived microsatellite markers in tea (Camellia sinensis L.). BMC Plant Biol (2009) 1.24
Development and mapping of simple sequence repeat markers for pearl millet from data mining of expressed sequence tags. BMC Plant Biol (2008) 1.18
Development of eSSR-Markers in Setaria italica and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and Non-Millet Species. PLoS One (2013) 1.16
Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites. BMC Plant Biol (2006) 1.14
Large-scale identification of polymorphic microsatellites using an in silico approach. BMC Bioinformatics (2008) 1.13
Analysis of Gene Expression Profiles in Leaf Tissues of Cultivated Peanuts and Development of EST-SSR Markers and Gene Discovery. Int J Plant Genomics (2009) 1.09
Development of microsatellite markers by transcriptome sequencing in two species of Amorphophallus (Araceae). BMC Genomics (2013) 1.04
Development of Reproducible EST-derived SSR Markers and Assessment of Genetic Diversity in Panax ginseng Cultivars and Related Species. J Ginseng Res (2011) 1.03
Characterization and development of EST-derived SSR markers in cultivated sweetpotato (Ipomoea batatas). BMC Plant Biol (2011) 0.97
Transcriptome analysis of Houttuynia cordata Thunb. by Illumina paired-end RNA sequencing and SSR marker discovery. PLoS One (2014) 0.94
Diversity analysis in Cannabis sativa based on large-scale development of expressed sequence tag-derived simple sequence repeat markers. PLoS One (2014) 0.91
Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages. BMC Plant Biol (2008) 0.87
Analysis of expressed sequence tags from Prunus mume flower and fruit and development of simple sequence repeat markers. BMC Genet (2010) 0.86
Identification and characterization of microsatellites in expressed sequence tags and their cross transferability in different plants. Int J Genomics (2014) 0.85
Generation, annotation and analysis of first large-scale expressed sequence tags from developing fiber of Gossypium barbadense L. PLoS One (2011) 0.85
Development and characterization of simple sequence repeat (SSR) markers based on RNA-sequencing of Medicago sativa and in silico mapping onto the M. truncatula genome. PLoS One (2014) 0.83
Isolation and characterization of 46 novel polymorphic EST-simple sequence repeats (SSR) markers in two Sinipercine Fishes (Siniperca) and cross-species amplification. Int J Mol Sci (2012) 0.83
Sequence analysis reveals genomic factors affecting EST-SSR primer performance and polymorphism. Mol Genet Genomics (2014) 0.81
Always look on both sides: phylogenetic information conveyed by simple sequence repeat allele sequences. PLoS One (2012) 0.81
Comparative Analysis and EST Mining Reveals High Degree of Conservation among Five Brassicaceae Species. Comp Funct Genomics (2010) 0.80
Genetic diversity in a world germplasm collection of tall fescue. Genet Mol Biol (2013) 0.80
Molecular marker development from transcript sequences and germplasm evaluation for cultivated peanut (Arachis hypogaea L.). Mol Genet Genomics (2015) 0.79
Molecular regulation and physiological functions of a novel FaHsfA2c cloned from tall fescue conferring plant tolerance to heat stress. Plant Biotechnol J (2016) 0.78
Assessment of Functional EST-SSR Markers (Sugarcane) in Cross-Species Transferability, Genetic Diversity among Poaceae Plants, and Bulk Segregation Analysis. Genet Res Int (2016) 0.77
Genetic evaluation of the breeding population of a valuable reforestation conifer Platycladus orientalis (Cupressaceae). Sci Rep (2016) 0.75
A web-based microsatellite database for the Magnaporthe oryzae genome. Bioinformation (2016) 0.75
Characterization of expressed sequence tags from developing fibers of Gossypium barbadense and evaluation of insertion-deletion variation in tetraploid cultivated cotton species. BMC Genomics (2013) 0.75
Insight into the genetic variability analysis and cultivar identification of tall fescue by using SSR markers. Hereditas (2016) 0.75
De Novo Transcriptome Sequencing Analysis of cDNA Library and Large-Scale Unigene Assembly in Japanese Red Pine (Pinus densiflora). Int J Mol Sci (2015) 0.75
Comparative study of diversity based on heat tolerant-related morpho-physiological traits and molecular markers in tall fescue accessions. Sci Rep (2015) 0.75
Genome sequence of the palaeopolyploid soybean. Nature (2010) 17.82
The genome of the model beetle and pest Tribolium castaneum. Nature (2008) 6.50
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94
Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology. BMC Genomics (2006) 4.54
Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature (2010) 3.90
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol (2011) 3.51
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nat Genet (2011) 3.51
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics (2010) 3.40
Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol (2009) 3.36
RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome. BMC Plant Biol (2010) 3.12
The phenylpropanoid pathway and plant defence-a genomics perspective. Mol Plant Pathol (2002) 2.93
The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol Biol (2005) 2.23
Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum. PLoS One (2008) 2.22
Genetics and functional genomics of legume nodulation. Curr Opin Plant Biol (2006) 2.09
Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism. J Exp Bot (2004) 2.04
ESTAP--an automated system for the analysis of EST data. Bioinformatics (2003) 2.01
Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection. Plant Physiol (2009) 2.00
Management of High-Throughput DNA Sequencing Projects: Alpheus. J Comput Sci Syst Biol (2008) 1.85
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol J (2011) 1.66
Three sequenced legume genomes and many crop species: rich opportunities for translational genomics. Plant Physiol (2009) 1.57
Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula. Proc Natl Acad Sci U S A (2011) 1.46
Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biol (2011) 1.45
Metabolomics spectral formatting, alignment and conversion tools (MSFACTs). Bioinformatics (2003) 1.45
Tall fescue genomic SSR markers: development and transferability across multiple grass species. Theor Appl Genet (2006) 1.44
Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Mol Ecol (2010) 1.37
Re-engineering plant gene targeting. Trends Plant Sci (2003) 1.36
Mapping the proteome of barrel medic (Medicago truncatula). Plant Physiol (2003) 1.35
Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Res (2011) 1.31
Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean. BMC Plant Biol (2010) 1.31
Computational analysis of missense mutations causing Snyder-Robinson syndrome. Hum Mutat (2010) 1.31
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol (2013) 1.26
Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes. BMC Plant Biol (2010) 1.25
Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula. Planta (2004) 1.25
Databases and information integration for the Medicago truncatula genome and transcriptome. Plant Physiol (2005) 1.23
Transcriptome analysis of alfalfa glandular trichomes. Planta (2004) 1.22
Combining next-generation sequencing strategies for rapid molecular resource development from an invasive aphid species, Aphis glycines. PLoS One (2010) 1.21
Polyploidy did not predate the evolution of nodulation in all legumes. PLoS One (2010) 1.21
Characterization of a Brome mosaic virus strain and its use as a vector for gene silencing in monocotyledonous hosts. Mol Plant Microbe Interact (2006) 1.19
A comprehensive transcriptome assembly of Pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms. Mol Plant (2012) 1.19
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies. Genome Biol (2013) 1.18
Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes. DNA Res (2012) 1.15
Sequence feature-based prediction of protein stability changes upon amino acid substitutions. BMC Genomics (2010) 1.13
An SSR- and AFLP-based genetic linkage map of tall fescue (Festuca arundinacea Schreb.). Theor Appl Genet (2004) 1.11
Current state-of-art of sequencing technologies for plant genomics research. Brief Funct Genomics (2012) 1.11
Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula. PLoS One (2013) 1.08
Deep Panning: steps towards probing the IgOme. PLoS One (2012) 1.08
Identification of candidate genes underlying an iron efficiency quantitative trait locus in soybean. Plant Physiol (2012) 1.07
Detached leaf and whole plant assays for soybean aphid resistance: differential responses among resistance sources and biotypes. J Econ Entomol (2010) 1.06
Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinformatics (2014) 1.05
Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing. BMC Genomics (2012) 1.05
Validation of reference genes for gene expression studies in Aphis glycines (Hemiptera: Aphididae). J Econ Entomol (2012) 1.03
An integrative approach to genomic introgression mapping. Plant Physiol (2010) 1.01
Venturing beyond beans and peas: what can we learn from Chamaecrista? Plant Physiol (2009) 1.01
LipidomeDB data calculation environment: online processing of direct-infusion mass spectral data for lipid profiles. Lipids (2011) 0.98
Next generation sequencing in predicting gene function in podophyllotoxin biosynthesis. J Biol Chem (2012) 0.98
Differential gene expression in Festuca under heat stress conditions. J Exp Bot (2005) 0.97
A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species. Am J Bot (2012) 0.97
IBI series winner. Keeping an eye on biology. Science (2013) 0.94
Phylogenetic signal variation in the genomes of Medicago (Fabaceae). Syst Biol (2013) 0.93
Predicting protein sumoylation sites from sequence features. Amino Acids (2011) 0.92
Protein sector analysis for the clustering of disease-associated mutations. BMC Genomics (2014) 0.92
Empirical evaluation of DArT, SNP, and SSR marker-systems for genotyping, clustering, and assigning sugar beet hybrid varieties into populations. Plant Sci (2011) 0.92
Gene expression patterns are correlated with genomic and genic structure in soybean. Genome (2011) 0.91
Population genetic structure of Aphis glycines. Environ Entomol (2009) 0.91
Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages. BMC Plant Biol (2008) 0.87
Joint linkage QTL analyses for partial resistance to Phytophthora sojae in soybean using six nested inbred populations with heterogeneous conditions. Theor Appl Genet (2013) 0.85
Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data. BMC Med Genomics (2013) 0.83
Analysis of quantitative disease resistance to southern leaf blight and of multiple disease resistance in maize, using near-isogenic lines. Theor Appl Genet (2011) 0.82
Novel quantitative trait loci for partial resistance to Phytophthora sojae in soybean PI 398841. Theor Appl Genet (2013) 0.82
Next-generation sequencing technologies: opportunities and obligations in plant genomics. Brief Funct Genomics (2012) 0.81
Microbiome diversity of Aphis glycines with extensive superinfection in native and invasive populations. Environ Microbiol Rep (2013) 0.81
The use of refuge in host plant resistance systems for the control of virulent biotype adaptation in the soybean aphid (Hemiptera: Aphididae. J Econ Entomol (2014) 0.81
Characterization of a chitin synthase encoding gene and effect of diflubenzuron in soybean aphid, Aphis glycines. Int J Biol Sci (2012) 0.81
Analysis of cDNA libraries from developing seeds of guar (Cyamopsis tetragonoloba (L.) Taub). BMC Plant Biol (2007) 0.80
Molecular characterization and expression analysis of soluble trehalase gene in Aphis glycines, a migratory pest of soybean. Bull Entomol Res (2013) 0.79
Structural assessment of the effects of amino acid substitutions on protein stability and protein protein interaction. Int J Comput Biol Drug Des (2011) 0.79
Cross-species amplification and polymorphism of microsatellite loci in the soybean aphid, Aphis glycines. J Econ Entomol (2009) 0.78
Population genetic structure and genetic diversity of soybean aphid collections from the USA, South Korea, and Japan. Genome (2013) 0.78
Genetic mapping of the powdery mildew resistance gene in soybean PI 567301B. Theor Appl Genet (2012) 0.78
Development of soybean aphid genomic SSR markers using next generation sequencing. Genome (2011) 0.78
Amplification of high-quantity serial analysis of gene expression ditags and improvement of concatemer cloning efficiency. Biotechniques (2003) 0.78
Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice. Plant Cell Rep (2013) 0.77
Genomic signatures and gene networking: challenges and promises. BMC Genomics (2011) 0.77
Reduction in fecundity and shifts in cellular processes by a native virus on an invasive insect. Genome Biol Evol (2014) 0.77
Genetic diversity and differentiation among laboratory and field populations of the soybean aphid, Aphis glycines. Bull Entomol Res (2010) 0.77
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinformatics (2014) 0.76
Soybean root hairs: a valuable system to investigate plant biology at the cellular level. Plant Signal Behav (2010) 0.76
Study of double-side ultrasonic embossing for fabrication of microstructures on thermoplastic polymer substrates. PLoS One (2013) 0.75
Proteomic analysis of blue light-induced twining response in Cuscuta australis. Plant Mol Biol (2009) 0.75
Genetic map of the powdery mildew resistance gene in soybean PI 243540. Genome (2010) 0.75