Published in Am J Bot on February 01, 2012
Catalyzing plant science research with RNA-seq. Front Plant Sci (2013) 1.19
Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content. BMC Genomics (2014) 0.90
Transgressive physiological and transcriptomic responses to light stress in allopolyploid Glycine dolichocarpa (Leguminosae). Heredity (Edinb) (2012) 0.86
RNA-Seq for gene identification and transcript profiling of three Stevia rebaudiana genotypes. BMC Genomics (2014) 0.86
The legacy of diploid progenitors in allopolyploid gene expression patterns. Philos Trans R Soc Lond B Biol Sci (2014) 0.86
Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae). Heredity (Edinb) (2012) 0.84
Digital gene expression analysis of gene expression differences within Brassica diploids and allopolyploids. BMC Plant Biol (2015) 0.84
RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress. PLoS One (2013) 0.83
Variation in transcriptome size: are we getting the message? Chromosoma (2014) 0.82
Differential gene expression and alternative splicing between diploid and tetraploid watermelon. J Exp Bot (2014) 0.81
Extensive translational regulation of gene expression in an allopolyploid (Glycine dolichocarpa). Plant Cell (2014) 0.81
Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication. BMC Bioinformatics (2013) 0.81
De novo assembly and characterization of the transcriptome of seagrass Zostera marina using Illumina paired-end sequencing. PLoS One (2014) 0.79
Mining transcriptomic data to study the origins and evolution of a plant allopolyploid complex. PeerJ (2014) 0.77
Molecular tools for exploring polyploid genomes in plants. Int J Mol Sci (2012) 0.76
Transcriptome Analysis of Differentially Expressed Genes Involved in Proanthocyanidin Accumulation in the Rhizomes of Fagopyrum dibotrys and an Irradiation-Induced Mutant. Front Physiol (2016) 0.75
Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima. G3 (Bethesda) (2015) 0.75
MicroRNA expression changes following synthesis of three full-sib Populus triploid populations with different heterozygosities. Plant Mol Biol (2017) 0.75
Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae). Genome Biol Evol (2016) 0.75
Genome sequence of the palaeopolyploid soybean. Nature (2010) 17.82
Designing and evaluating complex interventions to improve health care. BMJ (2007) 9.78
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94
Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology. BMC Genomics (2006) 4.54
Widespread genome duplications throughout the history of flowering plants. Genome Res (2006) 4.07
Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature (2010) 3.90
Mining EST databases to resolve evolutionary events in major crop species. Genome (2004) 3.82
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol (2011) 3.51
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics (2010) 3.40
Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol (2009) 3.36
Trehalose accumulation in rice plants confers high tolerance levels to different abiotic stresses. Proc Natl Acad Sci U S A (2002) 3.33
Taking healthcare interventions from trial to practice. BMJ (2010) 3.27
RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome. BMC Plant Biol (2010) 3.12
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). OMICS (2006) 2.57
An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants. Plant J (2010) 2.41
Implementing intensive control of blood glucose concentration and blood pressure in type 2 diabetes in England: cost analysis (UKPDS 63). BMJ (2002) 2.24
Paleopolyploidy and gene duplication in soybean and other legumes. Curr Opin Plant Biol (2006) 2.22
Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum. PLoS One (2008) 2.22
Genetics and functional genomics of legume nodulation. Curr Opin Plant Biol (2006) 2.09
Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism. J Exp Bot (2004) 2.04
ESTAP--an automated system for the analysis of EST data. Bioinformatics (2003) 2.01
Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection. Plant Physiol (2009) 2.00
Tall fescue EST-SSR markers with transferability across several grass species. Theor Appl Genet (2004) 1.97
HecA, a member of a class of adhesins produced by diverse pathogenic bacteria, contributes to the attachment, aggregation, epidermal cell killing, and virulence phenotypes of Erwinia chrysanthemi EC16 on Nicotiana clevelandii seedlings. Proc Natl Acad Sci U S A (2002) 1.95
Management of High-Throughput DNA Sequencing Projects: Alpheus. J Comput Sci Syst Biol (2008) 1.85
Interoperability with Moby 1.0--it's better than sharing your toothbrush! Brief Bioinform (2008) 1.80
Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnol J (2012) 1.75
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol J (2011) 1.66
Late onset type 1 diabetes. BMJ (2012) 1.64
Origins of domestication and polyploidy in oca (Oxalis Tuberosa: Oxalidaceae). 2. Chloroplast-expressed glutamine synthetase data. Am J Bot (2002) 1.61
Does electronic monitoring influence adherence to medication? Randomized controlled trial of measurement reactivity. Ann Behav Med (2014) 1.58
Three sequenced legume genomes and many crop species: rich opportunities for translational genomics. Plant Physiol (2009) 1.57
Point-of-care testing for Hb A1c in the management of diabetes: a systematic review and metaanalysis. Clin Chem (2011) 1.53
Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Theor Appl Genet (2011) 1.51
Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula. Proc Natl Acad Sci U S A (2011) 1.46
Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biol (2011) 1.45
ABC of psychological medicine: Functional somatic symptoms and syndromes. BMJ (2002) 1.44
Tall fescue genomic SSR markers: development and transferability across multiple grass species. Theor Appl Genet (2006) 1.44
The Legume Information System (LIS): an integrated information resource for comparative legume biology. Nucleic Acids Res (2005) 1.43
Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinformatics (2010) 1.39
Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Mol Ecol (2010) 1.37
Re-engineering plant gene targeting. Trends Plant Sci (2003) 1.36
Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiol (2008) 1.34
Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Res (2011) 1.31
Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean. BMC Plant Biol (2010) 1.31
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol (2013) 1.26
Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes. BMC Plant Biol (2010) 1.25
Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula. Planta (2004) 1.25
Databases and information integration for the Medicago truncatula genome and transcriptome. Plant Physiol (2005) 1.23
Transcriptome analysis of alfalfa glandular trichomes. Planta (2004) 1.22
Evolutionary dynamics and preferential expression of homeologous 18S-5.8S-26S nuclear ribosomal genes in natural and artificial glycine allopolyploids. Mol Biol Evol (2004) 1.21
Polyploidy did not predate the evolution of nodulation in all legumes. PLoS One (2010) 1.21
A comprehensive transcriptome assembly of Pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms. Mol Plant (2012) 1.19
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies. Genome Biol (2013) 1.18
Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes. DNA Res (2012) 1.15
Implementation of telehealth support for patients with type 2 diabetes using insulin treatment: an exploratory study. Inform Prim Care (2009) 1.15
Current state-of-art of sequencing technologies for plant genomics research. Brief Funct Genomics (2012) 1.11
Internal transcribed spacer repeat-specific primers and the analysis of hybridization in the Glycine tomentella (Leguminosae) polyploid complex. Mol Ecol (2002) 1.08
Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula. PLoS One (2013) 1.08
Deep Panning: steps towards probing the IgOme. PLoS One (2012) 1.08
Identification of candidate genes underlying an iron efficiency quantitative trait locus in soybean. Plant Physiol (2012) 1.07
Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing. BMC Genomics (2012) 1.05
Understanding the outcomes of multi-centre clinical trials: a qualitative study of health professional experiences and views. Soc Sci Med (2011) 1.04
The Diabetes Manual trial protocol - a cluster randomized controlled trial of a self-management intervention for type 2 diabetes [ISRCTN06315411]. BMC Fam Pract (2006) 1.03
The reticulate history of Medicago (Fabaceae). Syst Biol (2008) 1.02
An integrative approach to genomic introgression mapping. Plant Physiol (2010) 1.01
Smoking cessation in adults with diabetes: a systematic review and meta-analysis of data from randomised controlled trials. BMJ Open (2014) 1.01
Predictors of suboptimal glycaemic control in type 2 diabetes patients: the role of medication adherence and body mass index in the relationship between glycaemia and age. Diabetes Res Clin Pract (2012) 1.01
A high-throughput SNP marker system for parental polymorphism screening, and diversity analysis in common bean (Phaseolus vulgaris L.). Theor Appl Genet (2012) 1.01
Multiple origins and nrDNA internal transcribed spacer homeologue evolution in the Glycine tomentella (Leguminosae) allopolyploid complex. Genetics (2004) 1.01
Venturing beyond beans and peas: what can we learn from Chamaecrista? Plant Physiol (2009) 1.01
Efficacy of a text messaging (SMS) based intervention for adults with hypertension: protocol for the StAR (SMS Text-message Adherence suppoRt trial) randomised controlled trial. BMC Public Health (2014) 0.99
Next generation sequencing in predicting gene function in podophyllotoxin biosynthesis. J Biol Chem (2012) 0.98
Telemedicine-supported insulin optimisation in primary care. J Telemed Telecare (2010) 0.98
Expression of complementary RNA from chloroplast transgenes affects editing efficiency of transgene and endogenous chloroplast transcripts. Nucleic Acids Res (2005) 0.96
Quantifying whole transcriptome size, a prerequisite for understanding transcriptome evolution across species: an example from a plant allopolyploid. Genome Biol Evol (2010) 0.96
Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication. Plant Physiol (2011) 0.95
Dynamin 2 regulation of integrin endocytosis, but not VEGF signaling, is crucial for developmental angiogenesis. Development (2014) 0.95
Replication of nonautonomous retroelements in soybean appears to be both recent and common. Plant Physiol (2008) 0.95
Climate niche modeling in the perennial Glycine (Leguminosae) allopolyploid complex. Am J Bot (2014) 0.94
Development of microsatellite markers in Lupinus luteus (Fabaceae) and cross-species amplification in other lupine species. Am J Bot (2010) 0.94
IBI series winner. Keeping an eye on biology. Science (2013) 0.94
Phylogenetic signal variation in the genomes of Medicago (Fabaceae). Syst Biol (2013) 0.93
Diagnosis, classification, and treatment of diabetes. BMJ (2011) 0.92
Testing the polyploid past of soybean using a low-copy nuclear gene--is Glycine (Fabaceae: Papilionoideae) an auto- or allopolyploid? Mol Phylogenet Evol (2005) 0.92
In-fusion® cloning with vaccinia virus DNA polymerase. Methods Mol Biol (2012) 0.92
Gene expression patterns are correlated with genomic and genic structure in soybean. Genome (2011) 0.91
The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: evidence from nuclear waxy and plastid rps16. Am J Bot (2003) 0.91
Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases. BMC Genomics (2014) 0.90
Phytophthora functional genomics database (PFGD): functional genomics of phytophthora-plant interactions. Nucleic Acids Res (2006) 0.89