PubRank

W Hayes McDonald

Author PubWeight™ 111.77‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J Proteome Res 2003 12.31
2 Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome. Science 2002 7.49
3 Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science 2006 6.74
4 Assigning function to yeast proteins by integration of technologies. Mol Cell 2003 4.58
5 Shotgun identification of protein modifications from protein complexes and lens tissue. Proc Natl Acad Sci U S A 2002 3.70
6 Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5. Cell 2004 3.60
7 Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states. J Proteome Res 2006 3.32
8 Automatic quality assessment of peptide tandem mass spectra. Bioinformatics 2004 2.70
9 Tea4p links microtubule plus ends with the formin for3p in the establishment of cell polarity. Dev Cell 2005 2.65
10 Swi1 and Swi3 are components of a replication fork protection complex in fission yeast. Mol Cell Biol 2004 2.55
11 Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs. Mol Cell Biol 2002 2.32
12 Proteolysis-independent regulation of the transcription factor Met4 by a single Lys 48-linked ubiquitin chain. Nat Cell Biol 2004 2.30
13 Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA. Cell 2002 2.23
14 Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site. Mol Cell 2010 2.02
15 Carcinoma and stromal enzyme activity profiles associated with breast tumor growth in vivo. Proc Natl Acad Sci U S A 2004 1.96
16 Constraining G1-specific transcription to late G1 phase: the MBF-associated corepressor Nrm1 acts via negative feedback. Mol Cell 2006 1.92
17 Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast. Mol Cell Proteomics 2003 1.82
18 Helicobacter pylori exploits a unique repertoire of type IV secretion system components for pilus assembly at the bacteria-host cell interface. PLoS Pathog 2011 1.67
19 The Nse5-Nse6 dimer mediates DNA repair roles of the Smc5-Smc6 complex. Mol Cell Biol 2006 1.65
20 Staphylococcus aureus fur regulates the expression of virulence factors that contribute to the pathogenesis of pneumonia. Infect Immun 2010 1.59
21 Nse1, Nse2, and a novel subunit of the Smc5-Smc6 complex, Nse3, play a crucial role in meiosis. Mol Biol Cell 2004 1.52
22 Replication checkpoint kinase Cds1 regulates recombinational repair protein Rad60. Mol Cell Biol 2003 1.50
23 Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments. PLoS Genet 2011 1.45
24 Staphylococcus aureus LukAB cytotoxin kills human neutrophils by targeting the CD11b subunit of the integrin Mac-1. Proc Natl Acad Sci U S A 2013 1.45
25 Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry. J Biol Chem 2013 1.43
26 The Clp1/Cdc14 phosphatase contributes to the robustness of cytokinesis by association with anillin-related Mid1. J Cell Biol 2008 1.38
27 MS2Grouper: group assessment and synthetic replacement of duplicate proteomic tandem mass spectra. J Am Soc Mass Spectrom 2005 1.37
28 RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress. EMBO J 2003 1.35
29 Phospho-regulation of the Cdc14/Clp1 phosphatase delays late mitotic events in S. pombe. Dev Cell 2006 1.31
30 Dynamics of the peroxisomal import cycle of PpPex20p: ubiquitin-dependent localization and regulation. J Cell Biol 2006 1.27
31 Phosphorylation of Rad55 on serines 2, 8, and 14 is required for efficient homologous recombination in the recovery of stalled replication forks. Mol Cell Biol 2006 1.27
32 ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation. Anal Chem 2006 1.16
33 Expressed peptide tags: an additional layer of data for genome annotation. J Proteome Res 2006 1.14
34 A unique covalent bond in basement membrane is a primordial innovation for tissue evolution. Proc Natl Acad Sci U S A 2013 1.12
35 Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome. J Biol Chem 2003 1.09
36 Protein disulfide isomerase serves as a molecular chaperone to maintain estrogen receptor alpha structure and function. Mol Endocrinol 2006 1.08
37 Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics. Anal Chem 2006 1.08
38 Shotgun proteomics: identification of unique protein profiles of apoptotic bodies from biliary epithelial cells. Hepatology 2014 1.06
39 Proteomic characterization of the small subunit of Chlamydomonas reinhardtii chloroplast ribosome: identification of a novel S1 domain-containing protein and unusually large orthologs of bacterial S2, S3, and S5. Plant Cell 2002 1.04
40 The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae. Curr Biol 2012 1.02
41 The SBF- and MBF-associated protein Msa1 is required for proper timing of G1-specific transcription in Saccharomyces cerevisiae. J Biol Chem 2007 1.00
42 Obesity and altered glucose metabolism impact HDL composition in CETP transgenic mice: a role for ovarian hormones. J Lipid Res 2012 0.99
43 Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress. Mol Biol Cell 2006 0.98
44 Dual-tagging system for the affinity purification of mammalian protein complexes. Biotechniques 2007 0.97
45 Long isoform mouse selenoprotein P (Sepp1) supplies rat myoblast L8 cells with selenium via endocytosis mediated by heparin binding properties and apolipoprotein E receptor-2 (ApoER2). J Biol Chem 2012 0.97
46 Cell cycle-dependent phosphorylation of the DNA polymerase epsilon subunit, Dpb2, by the Cdc28 cyclin-dependent protein kinase. J Biol Chem 2004 0.96
47 A general system for studying protein-protein interactions in Gram-negative bacteria. J Proteome Res 2008 0.95
48 Glucose autoxidation induces functional damage to proteins via modification of critical arginine residues. Biochemistry 2011 0.91
49 Ppc89 links multiple proteins, including the septation initiation network, to the core of the fission yeast spindle-pole body. Mol Biol Cell 2006 0.91
50 Charting the protein complexome in yeast by mass spectrometry. Mol Cell Proteomics 2002 0.90
51 Characterization of the MDSC proteome associated with metastatic murine mammary tumors using label-free mass spectrometry and shotgun proteomics. PLoS One 2011 0.85
52 Bacillus cereus phosphopentomutase is an alkaline phosphatase family member that exhibits an altered entry point into the catalytic cycle. J Biol Chem 2010 0.83
53 Electrophilic adduction of ubiquitin activating enzyme E1 by N,N-diethyldithiocarbamate inhibits ubiquitin activation and is accompanied by striatal injury in the rat. Chem Res Toxicol 2012 0.83
54 Geometric restraint drives on- and off-pathway catalysis by the Escherichia coli menaquinol:fumarate reductase. J Biol Chem 2010 0.81
55 Evaluation of affinity-tagged protein expression strategies using local and global isotope ratio measurements. J Proteome Res 2009 0.81
56 Modulation of the structure, catalytic activity, and fidelity of African swine fever virus DNA polymerase X by a reversible disulfide switch. J Biol Chem 2009 0.79
57 Cross-species global proteomics reveals conserved and unique processes in Phytophthora sojae and Phytophthora ramorum. Mol Cell Proteomics 2008 0.78
58 An analysis pipeline for the inference of protein-protein interaction networks. Int J Data Min Bioinform 2009 0.77
59 Global phosphotyrosine proteomics identifies PKCδ as a marker of responsiveness to Src inhibition in colorectal cancer. PLoS One 2013 0.76
60 Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays. J Proteome Res 2007 0.76
61 Dnt1 acts as a mitotic inhibitor of the spindle checkpoint protein dma1 in fission yeast. Mol Biol Cell 2012 0.76
62 Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture. Mol Cell Proteomics 2013 0.75
63 Spatially Directed Proteomics of the Human Lens Outer Cortex Reveals an Intermediate Filament Switch Associated With the Remodeling Zone. Invest Ophthalmol Vis Sci 2016 0.75
64 Analysis of the role of phosphorylation in fission yeast Cdc13p/cyclinB function. J Biol Chem 2005 0.75