Published in Genetics on June 01, 2004
Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila. Genetics (2007) 2.10
Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection. Genetics (2004) 1.98
Estimating the genomewide rate of adaptive protein evolution in Drosophila. Genetics (2006) 1.76
Cross-species comparison of Drosophila male accessory gland protein genes. Genetics (2005) 1.71
Five Drosophila genomes reveal nonneutral evolution and the signature of host specialization in the chemoreceptor superfamily. Genetics (2007) 1.60
Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags. Genetics (2005) 1.56
Battle and ballet: molecular interactions between the sexes in Drosophila. J Hered (2009) 1.53
Postcopulatory sexual selection: Darwin's omission and its consequences. Proc Natl Acad Sci U S A (2009) 1.48
Associations between sperm competition and natural variation in male reproductive genes on the third chromosome of Drosophila melanogaster. Genetics (2007) 1.45
Post-mating gene expression profiles of female Drosophila melanogaster in response to time and to four male accessory gland proteins. Genetics (2008) 1.33
Exceptional diversity, maintenance of polymorphism, and recent directional selection on the APL1 malaria resistance genes of Anopheles gambiae. PLoS Biol (2011) 1.25
Molecular population genetics of accessory gland protein genes and testis-expressed genes in Drosophila mojavensis and D. arizonae. Genetics (2005) 1.20
Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species. Genome Biol Evol (2010) 1.14
Gene duplication and adaptive evolution of digestive proteases in Drosophila arizonae female reproductive tracts. PLoS Genet (2007) 1.06
Molecular social interactions: Drosophila melanogaster seminal fluid proteins as a case study. Adv Genet (2010) 1.03
Positive selection on nucleotide substitutions and indels in accessory gland proteins of the Drosophila pseudoobscura subgroup. J Mol Evol (2006) 0.98
Adaptive evolution of recently duplicated accessory gland protein genes in desert Drosophila. Genetics (2007) 0.97
Overdispersion of the molecular clock: temporal variation of gene-specific substitution rates in Drosophila. Mol Biol Evol (2008) 0.97
Complex interactions with females and rival males limit the evolution of sperm offence and defence. Proc Biol Sci (2007) 0.95
Transcriptional profiles of mating-responsive genes from testes and male accessory glands of the Mediterranean fruit fly, Ceratitis capitata. PLoS One (2012) 0.91
Overdispersion of the molecular clock varies between yeast, Drosophila and mammals. Genetics (2008) 0.90
Simple Y-autosomal incompatibilities cause hybrid male sterility in reciprocal crosses between Drosophila virilis and D. americana. Genetics (2010) 0.89
A population genetic hidden Markov model for detecting genomic regions under selection. Mol Biol Evol (2010) 0.84
Correcting the site frequency spectrum for divergence-based ascertainment. PLoS One (2009) 0.83
Unusual pattern of nucleotide sequence variation at the OS-E and OS-F genomic regions of Drosophila simulans. Genetics (2007) 0.82
Molecular characterization and evolution of a gene family encoding male-specific reproductive proteins in the African malaria vector Anopheles gambiae. BMC Evol Biol (2011) 0.77
Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res (1998) 106.16
Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res (1998) 96.63
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics (1989) 73.50
On the number of segregating sites in genetical models without recombination. Theor Popul Biol (1975) 60.96
Consed: a graphical tool for sequence finishing. Genome Res (1998) 59.36
PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci (1997) 45.07
The hitch-hiking effect of a favourable gene. Genet Res (1974) 34.74
Adaptive protein evolution at the Adh locus in Drosophila. Nature (1991) 31.65
A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol (1994) 19.91
The "hitchhiking effect" revisited. Genetics (1989) 17.72
Sexually antagonistic male adaptation triggered by experimental arrest of female evolution. Nature (1996) 10.61
The rapid evolution of reproductive proteins. Nat Rev Genet (2002) 6.88
A rapidly evolving homeobox at the site of a hybrid sterility gene. Science (1998) 5.40
Rapid evolution of male reproductive genes in the descent of man. Nature (2000) 5.33
Experimental removal of sexual selection reverses intersexual antagonistic coevolution and removes a reproductive load. Proc Natl Acad Sci U S A (1999) 5.01
Variation in sperm displacement and its association with accessory gland protein loci in Drosophila melanogaster. Genetics (1995) 4.51
Selective sweep of a newly evolved sperm-specific gene in Drosophila. Nature (1998) 4.24
Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila. Proc Natl Acad Sci U S A (2001) 4.15
Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex. Mol Biol Evol (1993) 4.08
The population genetics of the origin and divergence of the Drosophila simulans complex species. Genetics (2000) 3.78
Tokens of love: functions and regulation of Drosophila male accessory gland products. Insect Biochem Mol Biol (1997) 3.62
Genetic drift in an infinite population. The pseudohitchhiking model. Genetics (2000) 3.43
A general model to account for enzyme variation in natural populations. V. The SAS--CFF model. Theor Popul Biol (1978) 3.33
Reduced X-linked nucleotide polymorphism in Drosophila simulans. Proc Natl Acad Sci U S A (2000) 3.13
A Drosophila seminal fluid protein, Acp26Aa, stimulates egg laying in females for 1 day after mating. Proc Natl Acad Sci U S A (1995) 3.02
Mated Drosophila melanogaster females require a seminal fluid protein, Acp36DE, to store sperm efficiently. Genetics (1999) 2.65
Positive selection is a general phenomenon in the evolution of abalone sperm lysin. Mol Biol Evol (1995) 2.63
Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein bindin. Mol Biol Evol (1996) 2.55
The phylogeny of closely related species as revealed by the genealogy of a speciation gene, Odysseus. Proc Natl Acad Sci U S A (2000) 2.52
Positive selection driving the evolution of a gene of male reproduction, Acp26Aa, of Drosophila: II. Divergence versus polymorphism. Mol Biol Evol (1998) 2.42
High divergence of reproductive tract proteins and their association with postzygotic reproductive isolation in Drosophila melanogaster and Drosophila virilis group species. J Mol Evol (1995) 2.15
On the overdispersed molecular clock. Genetics (1987) 2.12
Different forces drive the evolution of the Acp26Aa and Acp26Ab accessory gland genes in the Drosophila melanogaster species complex. Genetics (1998) 2.07
Molecular population genetics of male accessory gland proteins in Drosophila. Genetics (2000) 2.02
Male seminal fluid proteins are essential for sperm storage in Drosophila melanogaster. Genetics (1999) 1.80
Junk ain't what junk does: neutral alleles in a selected context. Gene (1997) 1.77
Positive selection drives the evolution of the Acp29AB accessory gland protein in Drosophila. Genetics (1999) 1.60
Patterns of DNA sequence variation suggest the recent action of positive selection in the janus-ocnus region of Drosophila simulans. Genetics (2001) 1.50
Substitution processes in molecular evolution. I. Uniform and clustered substitutions in a haploid model. Genetics (1993) 1.48
Lineage effects and the index of dispersion of molecular evolution. Mol Biol Evol (1989) 1.40
The molecular clock revisited: the rate of synonymous vs. replacement change in Drosophila. Genetica (1998) 1.32
Substitution processes in molecular evolution. III. Deleterious alleles. Genetics (1994) 1.28
Understanding the overdispersed molecular clock. Genetics (2000) 1.19
Genomic effects of nucleotide substitutions in Drosophila simulans. Genetics (2002) 1.17
Sex in Drosophila mauritiana: a very high level of amino acid polymorphism in a male reproductive protein gene, Acp26Aa. Mol Biol Evol (2001) 1.00
Sperm competition and the maintenance of polymorphism. Heredity (Edinb) (2002) 0.98
Variance to mean ratio, R(t), for poisson processes on phylogenetic trees. Mol Phylogenet Evol (1994) 0.93
Robustness of the estimator of the index of dispersion for DNA sequences. Mol Phylogenet Evol (1997) 0.83
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
Extending assembly of short DNA sequences to handle error. Bioinformatics (2007) 14.46
Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol (2007) 6.18
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. N Engl J Med (2015) 5.71
Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID. Proc Natl Acad Sci U S A (2011) 4.68
De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. Genome Res (2008) 3.41
Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma. N Engl J Med (2015) 3.00
Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc Natl Acad Sci U S A (2006) 2.84
Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc Natl Acad Sci U S A (2004) 2.65
Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. PLoS Pathog (2011) 2.50
Genomic variation in natural populations of Drosophila melanogaster. Genetics (2012) 2.33
Practical innovations for high-throughput amplicon sequencing. Nat Methods (2013) 2.25
Gene transposition as a cause of hybrid sterility in Drosophila. Science (2006) 2.18
Natural selection drives Drosophila immune system evolution. Genetics (2003) 2.13
Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture. PLoS Genet (2012) 2.09
A genome-wide analysis of courting and mating responses in Drosophila melanogaster females. Genome (2004) 1.85
Genomic differentiation between temperate and tropical Australian populations of Drosophila melanogaster. Genetics (2010) 1.78
Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade. Genetics (2007) 1.75
Genomic analysis of adaptive differentiation in Drosophila melanogaster. Genetics (2008) 1.66
The tardigrade Hypsibius dujardini, a new model for studying the evolution of development. Dev Biol (2007) 1.56
HIV-1 Populations in Semen Arise through Multiple Mechanisms. PLoS Pathog (2010) 1.47
Parallel evolution of chimeric fusion genes. Proc Natl Acad Sci U S A (2005) 1.45
FDM: a graph-based statistical method to detect differential transcription using RNA-seq data. Bioinformatics (2011) 1.41
Genetic changes accompanying the evolution of host specialization in Drosophila sechellia. Genetics (2008) 1.29
Comparative genomics of accessory gland protein genes in Drosophila melanogaster and D. pseudoobscura. Mol Biol Evol (2004) 1.23
Origin and spread of de novo genes in Drosophila melanogaster populations. Science (2014) 1.22
Molecular population genetics of accessory gland protein genes and testis-expressed genes in Drosophila mojavensis and D. arizonae. Genetics (2005) 1.20
Genomic effects of nucleotide substitutions in Drosophila simulans. Genetics (2002) 1.17
Molecular evolution and population genetics of duplicated accessory gland protein genes in Drosophila. Mol Biol Evol (2004) 1.16
Molecular population genetics of female-expressed mating-induced serine proteases in Drosophila melanogaster. Mol Biol Evol (2007) 1.13
Adaptive gene expression divergence inferred from population genomics. PLoS Genet (2007) 1.13
Patterns of polymorphism and divergence from noncoding sequences of Drosophila melanogaster and D. simulans: evidence for nonequilibrium processes. Mol Biol Evol (2004) 1.12
Protein variation in Drosophila simulans, and comparison of genes from centromeric versus noncentromeric regions of chromosome 3. Mol Biol Evol (2002) 1.11
Whole-genome expression plasticity across tropical and temperate Drosophila melanogaster populations from Eastern Australia. Mol Biol Evol (2010) 1.10
Origin and evolution of a chimeric fusion gene in Drosophila subobscura, D. madeirensis and D. guanche. Genetics (2005) 1.10
Genome of Drosophila suzukii, the spotted wing drosophila. G3 (Bethesda) (2013) 1.08
Linkage disequilibrium and recent selection at three immunity receptor loci in Drosophila simulans. Genetics (2005) 1.08
De novo ORFs in Drosophila are important to organismal fitness and evolved rapidly from previously non-coding sequences. PLoS Genet (2013) 1.06
Evolution of gene expression in the Drosophila olfactory system. Mol Biol Evol (2008) 1.01
Parallel geographic variation in Drosophila melanogaster. Genetics (2014) 1.01
Pervasive and largely lineage-specific adaptive protein evolution in the dosage compensation complex of Drosophila melanogaster. Genetics (2007) 1.00
Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster. Genome Res (2008) 0.99
Evolution of an MCM complex in flies that promotes meiotic crossovers by blocking BLM helicase. Science (2012) 0.98
Adaptive evolution of recently duplicated accessory gland protein genes in desert Drosophila. Genetics (2007) 0.97
Next-generation mapping of complex traits with phenotype-based selection and introgression. Genetics (2011) 0.96
Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome. BMC Evol Biol (2008) 0.96
Recurrent deletion and gene presence/absence polymorphism: telomere dynamics dominate evolution at the tip of 3L in Drosophila melanogaster and D. simulans. Genetics (2008) 0.94
Evolution of a signaling nexus constrained by protein interfaces and conformational States. PLoS Comput Biol (2010) 0.93
Relaxed genetic constraint is ancestral to the evolution of phenotypic plasticity. Integr Comp Biol (2012) 0.91
Phylogeny of Toll-like receptor signaling: adapting the innate response. PLoS One (2013) 0.90
Genome reference and sequence variation in the large repetitive central exon of human MUC5AC. Am J Respir Cell Mol Biol (2014) 0.90
Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans. Genome Biol (2008) 0.89
Evidence of spatially varying selection acting on four chromatin-remodeling loci in Drosophila melanogaster. Genetics (2008) 0.87
Evolutionary genomics: codon bias and selection on single genomes. Nature (2005) 0.86
A locus in Drosophila sechellia affecting tolerance of a host plant toxin. Genetics (2013) 0.86
Overcoming redundancy: an RNAi enhancer screen for morphogenesis genes in Caenorhabditis elegans. Genetics (2011) 0.86
A robust method for transcript quantification with RNA-seq data. J Comput Biol (2013) 0.86
Wolbachia do not live by reproductive manipulation alone: infection polymorphism in Drosophila suzukii and D. subpulchrella. Mol Ecol (2014) 0.86
Comparative population genetics of the immunity gene, Relish: is adaptive evolution idiosyncratic? PLoS One (2007) 0.84
A suite of molecular markers for identifying species, detecting introgression and describing population structure in spadefoot toads (Spea spp.). Mol Ecol Resour (2012) 0.83
Patterns of amino acid evolution in the Drosophila ananassae chimeric gene, siren, parallel those of other Adh-derived chimeras. Genetics (2008) 0.83
Prediction of protein-protein interfaces on G-protein beta subunits reveals a novel phospholipase C beta2 binding domain. J Mol Biol (2009) 0.82
A QTL analysis of female variation contributing to refractoriness and sperm competition in Drosophila melanogaster. Genet Res (2005) 0.82
Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae. PLoS Genet (2009) 0.81
Population genomic analysis of base composition evolution in Drosophila melanogaster. Genome Biol Evol (2012) 0.81
Comparative genomics of multiple strains of Pseudomonas cannabina pv. alisalensis, a potential model pathogen of both monocots and dicots. PLoS One (2013) 0.80
CIB1 depletion impairs cell survival and tumor growth in triple-negative breast cancer. Breast Cancer Res Treat (2015) 0.80
Differential strengths of positive selection revealed by hitchhiking effects at small physical scales in Drosophila melanogaster. Mol Biol Evol (2013) 0.78
Suppressor analysis reveals a role for SecY in the SecA2-dependent protein export pathway of Mycobacteria. J Bacteriol (2013) 0.78
MT-Toolbox: improved amplicon sequencing using molecule tags. BMC Bioinformatics (2014) 0.78
Detecting highly differentiated copy-number variants from pooled population sequencing. Pac Symp Biocomput (2013) 0.78
Two rapidly evolving genes contribute to male fitness in Drosophila. J Mol Evol (2013) 0.77
Rampant adaptive evolution in regions of proteins with unknown function in Drosophila simulans. PLoS One (2007) 0.76
Draft Genome Sequences of a Phylogenetically Diverse Suite of Pseudomonas syringae Strains from Multiple Source Populations. Genome Announc (2014) 0.76
Extragenic suppressor mutations in ΔripA disrupt stability and function of LpxA. BMC Microbiol (2014) 0.75