Rapid identification and mapping of insertion sequences in Escherichia coli genomes using vectorette PCR.

PubWeight™: 0.88‹?›

🔗 View Article (PMC 481064)

Published in BMC Microbiol on July 08, 2004

Authors

Shaobin Zhong1, Antony M Dean

Author Affiliations

1: Biotechnology Institute, University of Minnesota, 1479 Gortner Ave, St, Paul, MN 55108, USA. adean@biosci.umn.edu

Articles cited by this

The complete genome sequence of Escherichia coli K-12. Science (1997) 84.27

Genetic applications of an inverse polymerase chain reaction. Genetics (1988) 18.48

Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res (2001) 15.22

Insertion sequences. Microbiol Mol Biol Rev (1998) 14.03

A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosome (YAC) clones. Nucleic Acids Res (1990) 8.52

Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157. Nucleic Acids Res (2002) 4.92

Distribution and abundance of insertion sequences among natural isolates of Escherichia coli. Genetics (1987) 4.77

Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B. J Bacteriol (2001) 3.84

Genomic evolution during a 10,000-generation experiment with bacteria. Proc Natl Acad Sci U S A (1999) 3.27

Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements. Genetics (2000) 2.75

Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli. Mol Biol Evol (1998) 2.69

Genetic architecture of thermal adaptation in Escherichia coli. Proc Natl Acad Sci U S A (2001) 2.61

Insertion sequence-related genetic variation in resting Escherichia coli K-12. Genetics (1994) 2.23

Vectorette PCR: a novel approach to genomic walking. PCR Methods Appl (1991) 2.21

Distribution of DNA insertion element IS5 in natural isolates of Escherichia coli. Proc Natl Acad Sci U S A (1984) 1.91

Full-length cDNA cloning and determination of mRNA 5' and 3' ends by amplification of adaptor-ligated cDNA. Biotechniques (1996) 1.52

The evolution of insertion sequences within enteric bacteria. Genetics (1992) 1.50

Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers. BMC Microbiol (2002) 1.37

Transposable elements and adaptation of host bacteria. Genetica (1994) 1.36

Enzyme kinetics, substitutable resources and competition: from biochemistry to frequency-dependent selection in lac. Genetics (2002) 1.30

A molecular investigation of genotype by environment interactions. Genetics (1995) 1.24

Bacterial evolution through the selective loss of beneficial Genes. Trade-offs in expression involving two loci. Genetics (2003) 1.14

The influence of cellular physiology on the initiation of mutational pathways in Escherichia coli populations. Proc Biol Sci (2003) 1.11

IS103, a new insertion element in Escherichia coli: characterization and distribution in natural populations. Genetics (1989) 1.10

Distribution of transposable elements in prokaryotes. Theor Popul Biol (1986) 1.10

Genomic organization and mutation analysis of p73 in oligodendrogliomas with chromosome 1 p-arm deletions. Genomics (1998) 0.98

Isolation of cosmids corresponding to the chromosome breakpoints of a de novo autosomal translocation, t(6;19)(p21;q13.1), in a patient with multicystic renal dysplasia. Cytogenet Cell Genet (1996) 0.80

Vectorette PCR isolation of microsatellite repeat sequences using anchored dinucleotide repeat primers. Nucleic Acids Res (1996) 0.78

Cloning and genetic mapping of wheat telomere-associated sequences. Mol Gen Genet (1997) 0.77

Articles by these authors

The biochemical architecture of an ancient adaptive landscape. Science (2005) 3.39

Local migration promotes competitive restraint in a host-pathogen 'tragedy of the commons'. Nature (2006) 2.58

Pervasive cryptic epistasis in molecular evolution. PLoS Genet (2010) 2.19

The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products. Genetics (2008) 2.17

Evolutionary genomics of ecological specialization. Proc Natl Acad Sci U S A (2004) 1.73

Evolving protein functional diversity in new genes of Drosophila. Proc Natl Acad Sci U S A (2004) 1.55

Direct demonstration of an adaptive constraint. Science (2006) 1.51

The selective cause of an ancient adaptation. Science (2005) 1.45

Enzyme kinetics, substitutable resources and competition: from biochemistry to frequency-dependent selection in lac. Genetics (2002) 1.30

Fitness consequences of a regulatory polymorphism in a seasonal environment. Proc Natl Acad Sci U S A (2003) 1.05

Evolution of specialists in an experimental microcosm. Genetics (2004) 1.05

The mitochondrial citrate transport protein: probing the secondary structure of transmembrane domain III, identification of residues that likely comprise a portion of the citrate transport pathway, and development of a model for the putative TMDIII-TMDIII' interface. J Biol Chem (2003) 1.03

Unrestricted migration favours virulent pathogens in experimental metapopulations: evolutionary genetics of a rapacious life history. Philos Trans R Soc Lond B Biol Sci (2010) 0.98

Transcription, translation, and the evolution of specialists and generalists. Mol Biol Evol (2009) 0.84

Bounded population sizes, fluctuating selection and the tempo and mode of coexistence. Proc Natl Acad Sci U S A (2013) 0.83

An empirical test of the concomitantly variable codon hypothesis. Proc Natl Acad Sci U S A (2007) 0.82

Evolution of enzymatic activities of testis-specific short-chain dehydrogenase/reductase in Drosophila. J Mol Evol (2010) 0.81

Description of a riboflavin biosynthetic gene variant prevalent in the phylum Proteobacteria. J Bacteriol (2013) 0.80

The argRB of Escherichia coli is rare in isolates obtained from natural sources. Gene (2006) 0.80

Enzymatic characterization of a monomeric isocitrate dehydrogenase from Streptomyces lividans TK54. Biochimie (2009) 0.78

Evolution of a transition state: role of Lys100 in the active site of isocitrate dehydrogenase. Chembiochem (2014) 0.75

Selection in a cyclical environment: possible impact of phenotypic lag on Darwinian fitness. J Mol Evol (2005) 0.75