PubRank

Marek Cieplak

Author PubWeight™ 30.72‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns. Proc Natl Acad Sci U S A 2006 2.21
2 First-principles design of nanomachines. Proc Natl Acad Sci U S A 2009 1.41
3 On the remarkable mechanostability of scaffoldins and the mechanical clamp motif. Proc Natl Acad Sci U S A 2009 1.21
4 Stabilizing effect of knots on proteins. Proc Natl Acad Sci U S A 2008 1.18
5 Tightening of knots in proteins. Phys Rev Lett 2008 1.13
6 Selection of optimal variants of Gō-like models of proteins through studies of stretching. Biophys J 2008 1.10
7 Mechanical strength of 17,134 model proteins and cysteine slipknots. PLoS Comput Biol 2009 1.01
8 Hydrodynamic effects in proteins. J Phys Condens Matter 2010 0.99
9 Understanding biology by stretching proteins: recent progress. Curr Opin Struct Biol 2010 0.96
10 The folding of knotted proteins: insights from lattice simulations. Phys Biol 2010 0.95
11 Untying knots in proteins. J Am Chem Soc 2010 0.92
12 Proteins in a shear flow. J Chem Phys 2007 0.92
13 What can one learn from experiments about the elusive transition state? Protein Sci 2004 0.90
14 Stretching of proteins in a uniform flow. J Chem Phys 2006 0.88
15 Assembly of protein tertiary structures from secondary structures using optimized potentials. Proteins 2003 0.88
16 BSDB: the biomolecule stretching database. Nucleic Acids Res 2010 0.87
17 Retracted Stretching to understand proteins - a survey of the protein data bank. Biophys J 2007 0.86
18 Predicting the order in which contacts are broken during single molecule protein stretching experiments. Proteins 2008 0.83
19 Mechanical stability of multidomain proteins and novel mechanical clamps. Proteins 2011 0.82
20 Native state dynamics and mechanical properties of human topoisomerase I within a structure-based coarse-grained model. Proteins 2009 0.82
21 Effects of confinement and crowding on folding of model proteins. Biosystems 2008 0.80
22 Stretching and twisting of the DNA duplexes in coarse-grained dynamical models. J Phys Condens Matter 2009 0.80
23 Lattice tube model of proteins. Phys Rev Lett 2004 0.79
24 Geometry of proteins: hydrogen bonding, sterics, and marginally compact tubes. Phys Rev E Stat Nonlin Soft Matter Phys 2006 0.78
25 Molecular jamming--the cystine slipknot mechanical clamp in all-atom simulations. J Chem Phys 2011 0.78
26 Structure-based analysis of thermodynamic and mechanical properties of cavity-containing proteins--case study of plant pathogenesis-related proteins of class 10. FEBS J 2013 0.78
27 Cystine plug and other novel mechanisms of large mechanical stability in dimeric proteins. Phys Rev Lett 2012 0.77
28 Cotranslational folding of deeply knotted proteins. J Phys Condens Matter 2015 0.76
29 Denaturation of proteins near polar surfaces. J Chem Phys 2011 0.76
30 The influence of hydrodynamic interactions on protein dynamics in confined and crowded spaces-assessment in simple models. Phys Biol 2010 0.76
31 Theoretical tests of the mechanical protection strategy in protein nanomechanics. Proteins 2014 0.76
32 Linker-mediated assembly of gold nanoparticles into multimeric motifs. Nanotechnology 2011 0.76
33 Formation of cystine slipknots in dimeric proteins. PLoS One 2013 0.75
34 Proteins at air-water and oil-water interfaces in an all-atom model. Phys Chem Chem Phys 2017 0.75
35 The length but not the sequence of peptide linker modules exerts the primary influence on the conformations of protein domains in cellulosome multi-enzyme complexes. Phys Chem Chem Phys 2017 0.75
36 Self-assembly of model proteins into virus capsids. J Phys Condens Matter 2017 0.75
37 Geometrical and electrical properties of indium tin oxide clusters in ink dispersions. Langmuir 2011 0.75
38 Molecular dynamics simulations of crystallization of hard spheres. Phys Rev E Stat Nonlin Soft Matter Phys 2002 0.75
39 Structural fluctuations and thermal stability of proteins in crowded environments: effects of the excluded volume. Phys Biol 2016 0.75
40 Amino acids and proteins at ZnO-water interfaces in molecular dynamics simulations. Phys Chem Chem Phys 2013 0.75
41 Unbinding and unfolding of adhesion protein complexes through stretching: interplay between shear and tensile mechanical clamps. Proteins 2014 0.75
42 A multi-scale molecular dynamics study of the assembly of micron-size supraparticles from 30 nm alkyl-coated nanoparticles. Phys Chem Chem Phys 2013 0.75
43 Proteins in the electric field near the surface of mica. J Chem Phys 2013 0.75
44 Statistical radii associated with amino acids to determine the contact map: fixing the structure of a type I cohesin domain in the Clostridium thermocellum cellulosome. Phys Biol 2015 0.75
45 Prediction of protein secondary structures from conformational biases. Proteins 2002 0.75