Published in J Bioinform Comput Biol on June 01, 2004
Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics (2007) 47.63
Defining genes in the genome of the hyperthermophilic archaeon Pyrococcus furiosus: implications for all microbial genomes. J Bacteriol (2005) 3.04
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes. BMC Bioinformatics (2007) 3.03
The Genome Reverse Compiler: an explorative annotation tool. BMC Bioinformatics (2009) 0.99
Presence of extensive Wolbachia symbiont insertions discovered in the genome of its host Glossina morsitans morsitans. PLoS Negl Trop Dis (2014) 0.96
Exploration of multivariate analysis in microbial coding sequence modeling. BMC Bioinformatics (2012) 0.83
Gene prediction in metagenomic fragments based on the SVM algorithm. BMC Bioinformatics (2013) 0.80
Rohlin distance and the evolution of influenza A virus: weak attractors and precursors. PLoS One (2011) 0.75
Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res (2008) 20.59
Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy (2012) 20.08
Essential role for Nix in autophagic maturation of erythroid cells. Nature (2008) 6.49
Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA. Cell Res (2011) 4.55
Pleiotropic defects in lymphocyte activation caused by caspase-8 mutations lead to human immunodeficiency. Nature (2002) 4.21
Accuracy improvement for identifying translation initiation sites in microbial genomes. Bioinformatics (2004) 4.16
In vitro studies with recombinant Plasmodium falciparum apical membrane antigen 1 (AMA1): production and activity of an AMA1 vaccine and generation of a multiallelic response. Infect Immun (2002) 4.02
T-cadherin is a receptor for hexameric and high-molecular-weight forms of Acrp30/adiponectin. Proc Natl Acad Sci U S A (2004) 3.90
Phase 1 clinical trial of apical membrane antigen 1: an asexual blood-stage vaccine for Plasmodium falciparum malaria. Infect Immun (2005) 3.72
Dendritic cell apoptosis in the maintenance of immune tolerance. Science (2006) 3.33
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes. BMC Bioinformatics (2007) 3.03
Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans. DNA Res (2004) 2.95
Genome-wide association study of esophageal squamous cell carcinoma in Chinese subjects identifies susceptibility loci at PLCE1 and C20orf54. Nat Genet (2010) 2.95
ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes. Nucleic Acids Res (2007) 2.93
Prediction of translation initiation site for microbial genomes with TriTISA. Bioinformatics (2008) 2.84
Firearm-related hospitalization and risk for subsequent violent injury, death, or crime perpetration: a cohort study. Ann Intern Med (2015) 2.62
An ultraviolet-radiation-independent pathway to melanoma carcinogenesis in the red hair/fair skin background. Nature (2012) 2.35
The survival of motor neurons protein determines the capacity for snRNP assembly: biochemical deficiency in spinal muscular atrophy. Mol Cell Biol (2005) 2.23
Phase 1 vaccine trial of Pvs25H: a transmission blocking vaccine for Plasmodium vivax malaria. Vaccine (2005) 2.21
A randomized stepped care intervention trial targeting posttraumatic stress disorder for surgically hospitalized injury survivors. Ann Surg (2013) 2.13
A family of Acrp30/adiponectin structural and functional paralogs. Proc Natl Acad Sci U S A (2004) 2.06
Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus. J Bacteriol (2004) 2.04
Acute care clinical indicators associated with discharge outcomes in children with severe traumatic brain injury. Crit Care Med (2014) 2.04
NF-κB inhibition delays DNA damage-induced senescence and aging in mice. J Clin Invest (2012) 1.91
De novo assembly and characterisation of the transcriptome during seed development, and generation of genic-SSR markers in peanut (Arachis hypogaea L.). BMC Genomics (2012) 1.90
A national US study of posttraumatic stress disorder, depression, and work and functional outcomes after hospitalization for traumatic injury. Ann Surg (2008) 1.89
HIF-1α and HIF-2α correlate with migration and invasion in gastric cancer. Cancer Biol Ther (2010) 1.83
Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biol (2009) 1.82
Variations in rates of tracheostomy in the critically ill trauma patient. Crit Care Med (2006) 1.79
Loss of splicing factor ASF/SF2 induces G2 cell cycle arrest and apoptosis, but inhibits internucleosomal DNA fragmentation. Genes Dev (2005) 1.76
Potential energy landscape and robustness of a gene regulatory network: toggle switch. PLoS Comput Biol (2007) 1.75
Identification of Staphylococcus aureus and determination of its methicillin resistance by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Anal Chem (2002) 1.70
Guideline Adherence and Hospital Costs in Pediatric Severe Traumatic Brain Injury. Pediatr Crit Care Med (2016) 1.69
C. elegans mitochondrial factor WAH-1 promotes phosphatidylserine externalization in apoptotic cells through phospholipid scramblase SCRM-1. Nat Cell Biol (2007) 1.63
X-ray imaging of shock waves generated by high-pressure fuel sprays. Science (2002) 1.63
Self-directed self-assembly of nanoparticle/copolymer mixtures. Nature (2005) 1.62
Salicylihalamide A inhibits the V0 sector of the V-ATPase through a mechanism distinct from bafilomycin A1. J Biol Chem (2004) 1.56
HDAC6 controls the kinetics of platelet activation. Blood (2012) 1.54
DNA microarray analysis of genome dynamics in Yersinia pestis: insights into bacterial genome microevolution and niche adaptation. J Bacteriol (2004) 1.52
Estimating the reproductive numbers for the 2008-2009 cholera outbreaks in Zimbabwe. Proc Natl Acad Sci U S A (2011) 1.49
A nationwide US study of post-traumatic stress after hospitalization for physical injury. Psychol Med (2007) 1.49
National variability in intracranial pressure monitoring and craniotomy for children with moderate to severe traumatic brain injury. Neurosurgery (2013) 1.48
Glioma virotherapy: effects of innate immune suppression and increased viral replication capacity. Cancer Res (2006) 1.47
The impact of an intensivist-model ICU on trauma-related mortality. Ann Surg (2006) 1.46
TFIID and human mediator coactivator complexes assemble cooperatively on promoter DNA. Genes Dev (2002) 1.45
The tale of protein lysine acetylation in the cytoplasm. J Biomed Biotechnol (2010) 1.44
An investigation of the effects of nanosize delivery system for antisense oligonucleotide on esophageal squamous cancer cells. Cancer Biol Ther (2008) 1.44
Expression of malaria transmission-blocking vaccine antigen Pfs25 in Pichia pastoris for use in human clinical trials. Vaccine (2003) 1.43
Intrinsic noise, dissipation cost, and robustness of cellular networks: the underlying energy landscape of MAPK signal transduction. Proc Natl Acad Sci U S A (2008) 1.43
Configuration-dependent diffusion can shift the kinetic transition state and barrier height of protein folding. Proc Natl Acad Sci U S A (2007) 1.42
Intraoperative adherence to a low tidal volume ventilation strategy in critically ill patients with preexisting acute lung injury. J Crit Care (2011) 1.40
Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism. Cell Res (2010) 1.36
Protein microarray for profiling antibody responses to Yersinia pestis live vaccine. Infect Immun (2005) 1.35
Multiscaled exploration of coupled folding and binding of an intrinsically disordered molecular recognition element in measles virus nucleoprotein. Proc Natl Acad Sci U S A (2013) 1.34
Vitamin C transporter Slc23a1 links renal reabsorption, vitamin C tissue accumulation, and perinatal survival in mice. J Clin Invest (2010) 1.33
Disability 3, 12, and 24 months after traumatic brain injury among children and adolescents. Pediatrics (2011) 1.33
Complete genome sequence of the type strain Pseudomonas stutzeri CGMCC 1.1803. J Bacteriol (2011) 1.32
Too Costly To Be Ill: Healthcare Access and Health-Seeking Behaviours among Rural-to-Urban Migrants in China. World Health Popul (2006) 1.32
Quantifying robustness and dissipation cost of yeast cell cycle network: the funneled energy landscape perspectives. Biophys J (2007) 1.31
Genome reannotation of Escherichia coli CFT073 with new insights into virulence. BMC Genomics (2009) 1.30
Vasopressor use and effect on blood pressure after severe adult traumatic brain injury. Neurocrit Care (2011) 1.29
Fully human monoclonal antibodies antagonizing the glucagon receptor improve glucose homeostasis in mice and monkeys. J Pharmacol Exp Ther (2009) 1.29
Genotypic variants at 2q33 and risk of esophageal squamous cell carcinoma in China: a meta-analysis of genome-wide association studies. Hum Mol Genet (2012) 1.28
Microarray analysis of temperature-induced transcriptome of Yersinia pestis. Microbiol Immunol (2004) 1.28
Expression of the Necator americanus hookworm larval antigen Na-ASP-2 in Pichia pastoris and purification of the recombinant protein for use in human clinical trials. Vaccine (2005) 1.28
Salinomycin inhibits osteosarcoma by targeting its tumor stem cells. Cancer Lett (2011) 1.27
Deficiency of Bim in dendritic cells contributes to overactivation of lymphocytes and autoimmunity. Blood (2007) 1.27
Characterization of the 3a protein of SARS-associated coronavirus in infected vero E6 cells and SARS patients. J Mol Biol (2004) 1.26
Single molecule conformational dynamics of adenylate kinase: energy landscape, structural correlations, and transition state ensembles. J Am Chem Soc (2008) 1.26
Influence of comorbidities and age on outcome following burn injury in older adults. J Burn Care Res (2009) 1.25
Regulation of the lifespan in dendritic cell subsets. Mol Immunol (2007) 1.23
Temperature dependence of the distribution of the first passage time: results from discontinuous molecular dynamics simulations of an all-atom model of the second beta-hairpin fragment of protein G. J Am Chem Soc (2003) 1.23
Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes. BMC Genomics (2011) 1.22
Real-time polymerase chain reaction for detecting SARS coronavirus, Beijing, 2003. Emerg Infect Dis (2004) 1.21
Early packed red blood cell transfusion and acute respiratory distress syndrome after trauma. Anesthesiology (2009) 1.21
Molecular and mechanistic properties of the membrane-bound mitochondrial monoamine oxidases. Biochemistry (2009) 1.21
Loss of has-miR-337-3p expression is associated with lymph node metastasis of human gastric cancer. J Exp Clin Cancer Res (2013) 1.19
Prevalence of pain in patients 1 year after major trauma. Arch Surg (2008) 1.19
Comparison of telephone with World Wide Web-based responses by parents and teens to a follow-up survey after injury. Health Serv Res (2011) 1.19
Variation in the rates of do not resuscitate orders after major trauma and the impact of intensive care unit environment. J Trauma (2008) 1.18
Reductively responsive siRNA-conjugated hydrogel nanoparticles for gene silencing. J Am Chem Soc (2012) 1.17
On the formation and properties of interstrand DNA-DNA cross-links forged by reaction of an abasic site with the opposing guanine residue of 5'-CAp sequences in duplex DNA. J Am Chem Soc (2013) 1.17
Health Indicators and Geographic Mobility among Young Rural-to-Urban Migrants in China. World Health Popul (2006) 1.17
20S-hydroxyvitamin D3, noncalcemic product of CYP11A1 action on vitamin D3, exhibits potent antifibrogenic activity in vivo. J Clin Endocrinol Metab (2013) 1.17
GlycoPEGylation of recombinant therapeutic proteins produced in Escherichia coli. Glycobiology (2006) 1.17
Epidemiology and outcomes of older adults with burn injury: an analysis of the National Burn Repository. J Burn Care Res (2009) 1.16
A quantitative assay for assessing the effects of DNA lesions on transcription. Nat Chem Biol (2012) 1.16
Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA. Nucleic Acids Res (2013) 1.16
Global analysis of iron assimilation and fur regulation in Yersinia pestis. FEMS Microbiol Lett (2006) 1.16
Tree and rate estimation by local evaluation of heterochronous nucleotide data. Bioinformatics (2006) 1.16
Glycogen synthase kinase-3β, NF-κB signaling, and tumorigenesis of human osteosarcoma. J Natl Cancer Inst (2012) 1.15
Application of a generic bow-tie based risk analysis framework on risk management of sea ports and offshore terminals. J Hazard Mater (2011) 1.15
Primary mediastinal sarcoma: surgical outcomes of 21 cases. Interact Cardiovasc Thorac Surg (2013) 1.15
Stochastic expression dynamics of a transcription factor revealed by single-molecule noise analysis. Nat Struct Mol Biol (2012) 1.14
Patterns and outcomes of pediatric facial fractures in the United States: a survey of the National Trauma Data Bank. J Am Coll Surg (2008) 1.14
Efficacy and safety of single-agent pertuzumab (rhuMAb 2C4), a human epidermal growth factor receptor dimerization inhibitor, in castration-resistant prostate cancer after progression from taxane-based therapy. J Clin Oncol (2007) 1.14