Published in DNA Res on June 30, 2004
Microevolution and history of the plague bacillus, Yersinia pestis. Proc Natl Acad Sci U S A (2004) 5.04
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet (2010) 4.35
The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet (2006) 3.33
A draft genome of Yersinia pestis from victims of the Black Death. Nature (2011) 3.18
Autoinducer 2 controls biofilm formation in Escherichia coli through a novel motility quorum-sensing regulator (MqsR, B3022). J Bacteriol (2006) 3.14
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Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis. Proc Natl Acad Sci U S A (2012) 2.22
Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death. Proc Natl Acad Sci U S A (2011) 2.15
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Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats. PLoS One (2008) 1.86
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The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. PLoS Genet (2007) 1.43
Protein microarray for profiling antibody responses to Yersinia pestis live vaccine. Infect Immun (2005) 1.35
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The iron-responsive Fur regulon in Yersinia pestis. J Bacteriol (2008) 1.25
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Effects of Psa and F1 on the adhesive and invasive interactions of Yersinia pestis with human respiratory tract epithelial cells. Infect Immun (2006) 1.15
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Iha from an Escherichia coli urinary tract infection outbreak clonal group A strain is expressed in vivo in the mouse urinary tract and functions as a catecholate siderophore receptor. Infect Immun (2006) 1.10
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Efficient tracing of global isolates of Yersinia pestis by restriction fragment length polymorphism analysis using three insertion sequences as probes. J Clin Microbiol (2006) 1.05
Loss of a biofilm-inhibiting glycosyl hydrolase during the emergence of Yersinia pestis. J Bacteriol (2008) 1.03
Homologues of insecticidal toxin complex genes in Yersinia enterocolitica biotype 1A and their contribution to virulence. Infect Immun (2005) 1.01
Characterization of Zur-dependent genes and direct Zur targets in Yersinia pestis. BMC Microbiol (2009) 0.99
The main virulence determinant of Yersinia entomophaga MH96 is a broad-host-range toxin complex active against insects. J Bacteriol (2011) 0.98
A chromosomally located traHIJKCLMN operon encoding a putative type IV secretion system is involved in the virulence of Yersinia ruckeri. Appl Environ Microbiol (2008) 0.97
Yersiniabactin production by Pseudomonas syringae and Escherichia coli, and description of a second yersiniabactin locus evolutionary group. Appl Environ Microbiol (2006) 0.96
Hierarchy of iron uptake systems: Yfu and Yiu are functional in Yersinia pestis. Infect Immun (2006) 0.95
MLVA distribution characteristics of Yersinia pestis in China and the correlation analysis. BMC Microbiol (2009) 0.94
Fibrinolytic and coagulative activities of Yersinia pestis. Front Cell Infect Microbiol (2013) 0.93
Characterization of chromosomal regions conserved in Yersinia pseudotuberculosis and lost by Yersinia pestis. Infect Immun (2008) 0.93
Expression during host infection and localization of Yersinia pestis autotransporter proteins. J Bacteriol (2011) 0.93
Molecular Darwinian evolution of virulence in Yersinia pestis. Infect Immun (2009) 0.92
High-throughput identification of new protective antigens from a Yersinia pestis live vaccine by enzyme-linked immunospot assay. Infect Immun (2009) 0.92
The single substitution I259T, conserved in the plasminogen activator Pla of pandemic Yersinia pestis branches, enhances fibrinolytic activity. J Bacteriol (2009) 0.92
Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes. Proteome Sci (2009) 0.92
Efficient sampling of parsimonious inversion histories with application to genome rearrangement in Yersinia. Genome Biol Evol (2009) 0.91
Cell membrane is impaired, accompanied by enhanced type III secretion system expression in Yersinia pestis deficient in RovA regulator. PLoS One (2010) 0.91
Large variations in bacterial ribosomal RNA genes. Mol Biol Evol (2012) 0.91
Amino acid and structural variability of Yersinia pestis LcrV protein. Infect Genet Evol (2009) 0.90
Direct and negative regulation of the sycO-ypkA-ypoJ operon by cyclic AMP receptor protein (CRP) in Yersinia pestis. BMC Microbiol (2009) 0.89
Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes. BMC Genomics (2007) 0.89
Insight into bacterial virulence mechanisms against host immune response via the Yersinia pestis-human protein-protein interaction network. Infect Immun (2011) 0.88
Early emergence of Yersinia pestis as a severe respiratory pathogen. Nat Commun (2015) 0.88
Autoregulation of PhoP/PhoQ and positive regulation of the cyclic AMP receptor protein-cyclic AMP complex by PhoP in Yersinia pestis. J Bacteriol (2012) 0.87
Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach. BMC Syst Biol (2012) 0.87
Plasmid-Mediated Antibiotic Resistance and Virulence in Gram-negatives: the Klebsiella pneumoniae Paradigm. Microbiol Spectr (2015) 0.86
An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92. BMC Syst Biol (2011) 0.86
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Delineation and analysis of chromosomal regions specifying Yersinia pestis. Infect Immun (2010) 0.86
'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution. Nat Rev Microbiol (2016) 0.86
A direct link between the global regulator PhoP and the Csr regulon in Y. pseudotuberculosis through the small regulatory RNA CsrC. RNA Biol (2014) 0.84
The mannitol operon repressor MtlR belongs to a new class of transcription regulators in bacteria. J Biol Chem (2009) 0.83
Relaxed natural selection alone does not permit transposable element expansion within 4,000 generations in Escherichia coli. Genetica (2011) 0.82
Fast and simple detection of Yersinia pestis applicable to field investigation of plague foci. PLoS One (2013) 0.82
High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis. BMC Genomics (2010) 0.81
An alternative outer membrane secretion mechanism for an autotransporter protein lacking a C-terminal stable core. Mol Microbiol (2013) 0.81
Expression, refolding, and initial structural characterization of the Y. pestis Ail outer membrane protein in lipids. Biochim Biophys Acta (2010) 0.81
Features of Variable Number of Tandem Repeats in Yersinia pestis and the Development of a Hierarchical Genotyping Scheme. PLoS One (2013) 0.80
Omics strategies for revealing Yersinia pestis virulence. Front Cell Infect Microbiol (2012) 0.80
GO4genome: a prokaryotic phylogeny based on genome organization. J Mol Evol (2009) 0.79
Novel genomic tools for specific and real-time detection of biothreat and frequently encountered foodborne pathogens. J Food Prot (2012) 0.79
Identification and characterisation of a novel adhesin Ifp in Yersinia pseudotuberculosis. BMC Microbiol (2011) 0.79
Yersinia pestis: mechanisms of entry into and resistance to the host cell. Front Cell Infect Microbiol (2013) 0.79
Transposable element loads in a bacterial symbiont of weevils are extremely variable. Appl Environ Microbiol (2008) 0.78
Single-Nucleotide Polymorphisms Reveal Spatial Diversity Among Clones of Yersinia pestis During Plague Outbreaks in Colorado and the Western United States. Vector Borne Zoonotic Dis (2015) 0.78
Yersinia pestis biovar Microtus strain 201, an avirulent strain to humans, provides protection against bubonic plague in rhesus macaques. Hum Vaccin Immunother (2013) 0.78
Complete Genome Sequences of Citrobacter braakii Strains GTA-CB01 and GTA-CB04, Isolated from Ground Beef. Genome Announc (2015) 0.78
Intrinsic plasmids influence MicF-mediated translational repression of ompF in Yersinia pestis. Front Microbiol (2015) 0.77
Challenges in enzymatic route of mannitol production. ISRN Biotechnol (2012) 0.77
Chromosomal rearrangement features of Yersinia pestis strains from natural plague foci in China. Am J Trop Med Hyg (2014) 0.77
Novel plasmids and resistance phenotypes in Yersinia pestis: unique plasmid inventory of strain Java 9 mediates high levels of arsenic resistance. PLoS One (2012) 0.76
The Yersinia Type III secretion effector YopM Is an E3 ubiquitin ligase that induced necrotic cell death by targeting NLRP3. Cell Death Dis (2016) 0.76
Reannotation of Yersinia pestis Strain 91001 Based on Omics Data. Am J Trop Med Hyg (2016) 0.75
An Interaction between the Inner Rod Protein YscI and the Needle Protein YscF Is Required to Assemble the Needle Structure of the Yersinia Type Three Secretion System. J Biol Chem (2017) 0.75
Adhesive properties of YapV and paralogous autotransporter proteins of Yersinia pestis. Infect Immun (2015) 0.75
Transporter molecules influence the gene expression in HeLa cells. Int J Med Sci (2008) 0.75
Selective Protective Potency of Yersinia pestis ΔnlpD Mutants. Acta Naturae (2015) 0.75
Comparison of virulence between the Yersinia pestis Microtus 201, an avirulent strain to humans, and the vaccine strain EV in rhesus macaques, Macaca mulatta. Hum Vaccin Immunother (2014) 0.75
Two Isoforms of Yersinia pestis Plasminogen Activator Pla: Intraspecies Distribution, Intrinsic Disorder Propensity, and Contribution to Virulence. PLoS One (2016) 0.75
Yersinia pestis YopK inhibits bacterial adhesion to host cells by binding to the extracellular matrix adaptor protein matrilin-2. Infect Immun (2017) 0.75
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SOAP: short oligonucleotide alignment program. Bioinformatics (2008) 68.13
The diploid genome sequence of an Asian individual. Nature (2008) 46.29
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A human gut microbial gene catalogue established by metagenomic sequencing. Nature (2010) 43.63
A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 42.78
SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics (2009) 39.47
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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience (2012) 20.89
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Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A (2002) 20.48
The genome sequence of the malaria mosquito Anopheles gambiae. Science (2002) 20.36
International network of cancer genome projects. Nature (2010) 20.35
Landscape of transcription in human cells. Nature (2012) 20.18
Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy (2012) 20.08
ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature (2009) 18.38
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
Genome-wide detection and characterization of positive selection in human populations. Nature (2007) 17.27
SNP detection for massively parallel whole-genome resequencing. Genome Res (2009) 15.96
The sequence and de novo assembly of the giant panda genome. Nature (2009) 15.76
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature (2009) 15.06
WEGO: a web tool for plotting GO annotations. Nucleic Acids Res (2006) 13.06
Mapping copy number variation by population-scale genome sequencing. Nature (2011) 12.55
A systematic survey of loss-of-function variants in human protein-coding genes. Science (2012) 12.25
Prepublication data sharing. Nature (2009) 12.24
The developmental transcriptome of Drosophila melanogaster. Nature (2010) 11.85
A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature (2012) 11.68
Sequencing of 50 human exomes reveals adaptation to high altitude. Science (2010) 11.27
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science (2002) 9.59
TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res (2006) 8.83
A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. Nat Genet (2004) 8.55
The genome of the mesopolyploid crop species Brassica rapa. Nat Genet (2011) 8.23
The genome of the cucumber, Cucumis sativus L. Nat Genet (2009) 8.19
Sequencing and analysis of Neanderthal genomic DNA. Science (2006) 8.06
Rapid whole-genome mutational profiling using next-generation sequencing technologies. Genome Res (2008) 8.01
An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people. Science (2012) 7.94
Genome sequence and analysis of the tuber crop potato. Nature (2011) 7.77
Identification of novel cytolytic peptides as key virulence determinants for community-associated MRSA. Nat Med (2007) 7.75
The Genomes of Oryza sativa: a history of duplications. PLoS Biol (2005) 7.67
Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature (2010) 7.51
A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition. Cancer Res (2008) 7.45
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Exercise is associated with reduced risk for incident dementia among persons 65 years of age and older. Ann Intern Med (2006) 7.14
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med (2011) 7.11
Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia. Nat Genet (2010) 7.08
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Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science (2011) 6.93
TreeFam: 2008 Update. Nucleic Acids Res (2007) 6.63
A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science (2004) 6.62
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Essential role for Nix in autophagic maturation of erythroid cells. Nature (2008) 6.49
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Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science (2007) 5.69
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Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature (2006) 5.52
Survival after initial diagnosis of Alzheimer disease. Ann Intern Med (2004) 5.52
Aryl hydrocarbon receptor antagonists promote the expansion of human hematopoietic stem cells. Science (2010) 5.50
Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants. Nat Genet (2010) 5.44
The oyster genome reveals stress adaptation and complexity of shell formation. Nature (2012) 5.30
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature (2004) 5.24
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat Genet (2010) 5.20
Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell (2012) 5.16
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