Published in PLoS Biol on August 31, 2004
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International network of cancer genome projects. Nature (2010) 20.35
GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics (2004) 20.23
NCBI GEO: mining tens of millions of expression profiles--database and tools update. Nucleic Acids Res (2006) 19.42
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NCBI GEO: mining millions of expression profiles--database and tools. Nucleic Acids Res (2005) 17.61
NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res (2008) 17.35
Identification of genes periodically expressed in the human cell cycle and their expression in tumors. Mol Biol Cell (2002) 17.32
Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol (2002) 16.75
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
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The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. Nucleic Acids Res (2013) 14.23
TM4 microarray software suite. Methods Enzymol (2006) 13.78
The prognostic role of a gene signature from tumorigenic breast-cancer cells. N Engl J Med (2007) 13.39
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res (2008) 12.45
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics (2003) 12.00
Multiple-laboratory comparison of microarray platforms. Nat Methods (2005) 11.74
The somatic genomic landscape of glioblastoma. Cell (2013) 11.73
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res (2002) 10.65
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Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors. Genome Biol (2007) 10.49
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Database resources of the National Center for Biotechnology Information: update. Nucleic Acids Res (2004) 9.85
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics (2005) 9.84
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Transcriptome and genome sequencing uncovers functional variation in humans. Nature (2013) 8.89
Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease. Nat Genet (2005) 7.82
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res (2010) 7.67
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The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics (2006) 7.37
The mouse Gene Expression Database (GXD): updates and enhancements. Nucleic Acids Res (2004) 7.26
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
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The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data. Genome Biol (2005) 6.44
The Stanford Microarray Database: data access and quality assessment tools. Nucleic Acids Res (2003) 6.31
Modeling sample variables with an Experimental Factor Ontology. Bioinformatics (2010) 6.27
Independence and reproducibility across microarray platforms. Nat Methods (2005) 6.26
CIBEX: center for information biology gene expression database. C R Biol (2004) 6.16
Global transcriptional responses of fission yeast to environmental stress. Mol Biol Cell (2003) 6.04
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet (2009) 6.02
DDBJ in preparation for overview of research activities behind data submissions. Nucleic Acids Res (2006) 6.02
Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature (2009) 5.90
Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies. Genome Res (2002) 5.67
Periodic gene expression program of the fission yeast cell cycle. Nat Genet (2004) 5.60
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinformatics (2010) 5.60
Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV. Bioinformatics (2011) 5.45
Modeling biomedical experimental processes with OBI. J Biomed Semantics (2010) 5.36
A global map of human gene expression. Nat Biotechnol (2010) 5.32
Gene expression atlas at the European bioinformatics institute. Nucleic Acids Res (2009) 4.99
ArrayExpress update--trends in database growth and links to data analysis tools. Nucleic Acids Res (2012) 4.91
Marked genomic differences characterize primary and secondary glioblastoma subtypes and identify two distinct molecular and clinical secondary glioblastoma entities. Cancer Res (2006) 4.80
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Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins. Nature (2012) 4.35
Gene expression omnibus: microarray data storage, submission, retrieval, and analysis. Methods Enzymol (2006) 4.30
Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. Mol Biol Cell (2007) 4.27
The External RNA Controls Consortium: a progress report. Nat Methods (2005) 4.24
The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23
Expression Profiler: next generation--an online platform for analysis of microarray data. Nucleic Acids Res (2004) 4.21
The Stanford Microarray Database accommodates additional microarray platforms and data formats. Nucleic Acids Res (2005) 4.17
The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?". OMICS (2008) 4.15
Standards for microarray data. Science (2002) 4.11