Published in OMICS on June 01, 2008
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res (2008) 12.45
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinformatics (2010) 5.60
mzML--a community standard for mass spectrometry data. Mol Cell Proteomics (2010) 4.81
Megascience. 'Omics data sharing. Science (2009) 4.36
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One (2008) 3.83
The BioSample Database (BioSD) at the European Bioinformatics Institute. Nucleic Acids Res (2011) 3.05
Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research. Metabolomics (2009) 2.21
ISA-TAB-Nano: a specification for sharing nanomaterial research data in spreadsheet-based format. BMC Biotechnol (2013) 1.80
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation. Genome Biol (2009) 1.60
A System for Information Management in BioMedical Studies--SIMBioMS. Bioinformatics (2009) 1.60
MIMAS 3.0 is a Multiomics Information Management and Annotation System. BMC Bioinformatics (2009) 1.24
Informatics and standards for nanomedicine technology. Wiley Interdiscip Rev Nanomed Nanobiotechnol (2011) 1.19
The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons. Nucleic Acids Res (2011) 1.18
Challenges of molecular nutrition research 6: the nutritional phenotype database to store, share and evaluate nutritional systems biology studies. Genes Nutr (2010) 1.18
Extending Standards for Genomics and Metagenomics Data: A Research Coordination Network for the Genomic Standards Consortium (RCN4GSC). Stand Genomic Sci (2009) 1.12
Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Special Interest Group at ISMB 2009. Stand Genomic Sci (2009) 1.10
Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation. Nucleic Acids Res (2010) 1.08
Biomarkers in autism spectrum disorder: the old and the new. Psychopharmacology (Berl) (2013) 1.01
Structuring research methods and data with the research object model: genomics workflows as a case study. J Biomed Semantics (2014) 0.98
The Ontology for Biomedical Investigations. PLoS One (2016) 0.94
An ISA-TAB-Nano based data collection framework to support data-driven modelling of nanotoxicology. Beilstein J Nanotechnol (2015) 0.86
DIPSBC--data integration platform for systems biology collaborations. BMC Bioinformatics (2012) 0.84
SDRF2GRAPH: a visualization tool of a spreadsheet-based description of experimental processes. BMC Bioinformatics (2009) 0.84
Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network. Genes Nutr (2009) 0.81
Metabolonote: a wiki-based database for managing hierarchical metadata of metabolome analyses. Front Bioeng Biotechnol (2015) 0.80
New concepts for building vocabulary for cell image ontologies. BMC Bioinformatics (2011) 0.79
SBtab: a flexible table format for data exchange in systems biology. Bioinformatics (2016) 0.79
The National NeuroAIDS Tissue Consortium (NNTC) Database: an integrated database for HIV-related studies. Database (Oxford) (2015) 0.78
How should the completeness and quality of curated nanomaterial data be evaluated? Nanoscale (2016) 0.78
Data standards for Omics data: the basis of data sharing and reuse. Methods Mol Biol (2011) 0.78
FuGEFlow: data model and markup language for flow cytometry. BMC Bioinformatics (2009) 0.77
XperimentR: painless annotation of a biological experiment for the laboratory scientist. BMC Bioinformatics (2013) 0.76
A novel knowledge representation framework for the statistical validation of quantitative imaging biomarkers. J Digit Imaging (2013) 0.76
Increasing rigor in NMR-based metabolomics through validated and open source tools. Curr Opin Biotechnol (2016) 0.75
Towards interoperable reporting standards for omics data: hopes and hurdles. Summit on Translat Bioinforma (2009) 0.75
graph2tab, a library to convert experimental workflow graphs into tabular formats. Bioinformatics (2012) 0.75
Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure. F1000Res (2017) 0.75
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol (2007) 35.41
The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol (2008) 31.04
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotechnol (2006) 30.90
International network of cancer genome projects. Nature (2010) 20.35
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. OMICS (2008) 18.69
EnsMart: a generic system for fast and flexible access to biological data. Genome Res (2004) 17.64
Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol (2002) 16.75
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
ArrayExpress--a public repository for microarray gene expression data at the EBI. Nucleic Acids Res (2003) 15.48
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res (2008) 12.45
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics (2005) 9.84
Extended-release niacin or ezetimibe and carotid intima-media thickness. N Engl J Med (2009) 9.35
Transcriptome and genome sequencing uncovers functional variation in humans. Nature (2013) 8.89
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res (2010) 7.67
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics (2006) 7.53
PRIDE: the proteomics identifications database. Proteomics (2005) 7.52
The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics (2006) 7.37
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol (2010) 7.08
Proposed minimum reporting standards for chemical analysis Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI). Metabolomics (2007) 6.93
Cognitive functioning of long-term heavy cannabis users seeking treatment. JAMA (2002) 6.48
The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Stand Genomic Sci (2010) 6.30
Modeling sample variables with an Experimental Factor Ontology. Bioinformatics (2010) 6.27
Global transcriptional responses of fission yeast to environmental stress. Mol Biol Cell (2003) 6.04
Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project. Nat Biotechnol (2006) 5.92
Periodic gene expression program of the fission yeast cell cycle. Nat Genet (2004) 5.60
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinformatics (2010) 5.60
Pattern separation in the human hippocampal CA3 and dentate gyrus. Science (2008) 5.56
Modeling biomedical experimental processes with OBI. J Biomed Semantics (2010) 5.36
A global map of human gene expression. Nat Biotechnol (2010) 5.32
Rat toxicogenomic study reveals analytical consistency across microarray platforms. Nat Biotechnol (2006) 5.14
Gene expression atlas at the European bioinformatics institute. Nucleic Acids Res (2009) 4.99
ArrayExpress update--trends in database growth and links to data analysis tools. Nucleic Acids Res (2012) 4.91
Dissecting the genomic complexity underlying medulloblastoma. Nature (2012) 4.77
Toward interoperable bioscience data. Nat Genet (2012) 4.72
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci (2010) 4.70
Defining seasonal marine microbial community dynamics. ISME J (2011) 4.61
A null mutation in human APOC3 confers a favorable plasma lipid profile and apparent cardioprotection. Science (2008) 4.50
Habitat-Lite: a GSC case study based on free text terms for environmental metadata. OMICS (2008) 4.40
Megascience. 'Omics data sharing. Science (2009) 4.36
The seasonal structure of microbial communities in the Western English Channel. Environ Microbiol (2009) 4.30
The External RNA Controls Consortium: a progress report. Nat Methods (2005) 4.24
Expression Profiler: next generation--an online platform for analysis of microarray data. Nucleic Acids Res (2004) 4.21
Human Proteinpedia enables sharing of human protein data. Nat Biotechnol (2008) 4.21
Standards for microarray data. Science (2002) 4.11
Bioinformatics training: a review of challenges, actions and support requirements. Brief Bioinform (2010) 4.02
The Genomic Standards Consortium. PLoS Biol (2011) 3.99
Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinformatics (2005) 3.93
The implications of alternative splicing in the ENCODE protein complement. Proc Natl Acad Sci U S A (2007) 3.93
Submission of microarray data to public repositories. PLoS Biol (2004) 3.83
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One (2008) 3.83
Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers. OMICS (2008) 3.71
ArrayExpress service for reviewers/editors of DNA microarray papers. Nat Biotechnol (2006) 3.61
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res (2011) 3.61
Development of FuGO: an ontology for functional genomics investigations. OMICS (2006) 3.59
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nat Biotechnol (2007) 3.55
A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group. OMICS (2006) 3.51
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). Nat Biotechnol (2008) 3.43