Published in Stud Health Technol Inform on January 01, 2004
Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system. BMC Med Inform Decis Mak (2006) 9.98
ConText: an algorithm for determining negation, experiencer, and temporal status from clinical reports. J Biomed Inform (2009) 4.16
A novel hybrid approach to automated negation detection in clinical radiology reports. J Am Med Inform Assoc (2007) 2.65
caTIES: a grid based system for coding and retrieval of surgical pathology reports and tissue specimens in support of translational research. J Am Med Inform Assoc (2010) 2.62
Supporting information retrieval from electronic health records: A report of University of Michigan's nine-year experience in developing and using the Electronic Medical Record Search Engine (EMERSE). J Biomed Inform (2015) 1.35
A UMLS-based spell checker for natural language processing in vaccine safety. BMC Med Inform Decis Mak (2007) 1.24
Availability and quality of paraffin blocks identified in pathology archives: a multi-institutional study by the Shared Pathology Informatics Network (SPIN). BMC Cancer (2007) 1.14
Automating tissue bank annotation from pathology reports - comparison to a gold standard expert annotation set. AMIA Annu Symp Proc (2005) 1.09
Negation detection in Swedish clinical text: An adaption of NegEx to Swedish. J Biomed Semantics (2011) 1.02
Identifying primary and recurrent cancers using a SAS-based natural language processing algorithm. J Am Med Inform Assoc (2012) 1.01
Evaluation of negation and uncertainty detection and its impact on precision and recall in search. J Digit Imaging (2009) 0.79
Text Mining of the Electronic Health Record: An Information Extraction Approach for Automated Identification and Subphenotyping of HFpEF Patients for Clinical Trials. J Cardiovasc Transl Res (2017) 0.77
Using a statistical natural language Parser augmented with the UMLS specialist lexicon to assign SNOMED CT codes to anatomic sites and pathologic diagnoses in full text pathology reports. AMIA Annu Symp Proc (2009) 0.77
Support patient search on pathology reports with interactive online learning based data extraction. J Pathol Inform (2015) 0.75
Laying the groundwork for enterprise-wide medical language processing services: architecture and process. AMIA Annu Symp Proc (2009) 0.75
Diagnosis of gastrointestinal stromal tumors: A consensus approach. Hum Pathol (2002) 20.87
Evaluation of a deidentification (De-Id) software engine to share pathology reports and clinical documents for research. Am J Clin Pathol (2004) 6.59
Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression. Cancer Cell (2005) 6.04
Bethesda proposals for classification of nonlymphoid hematopoietic neoplasms in mice. Blood (2002) 4.88
What can natural language processing do for clinical decision support? J Biomed Inform (2009) 4.51
ConText: an algorithm for determining negation, experiencer, and temporal status from clinical reports. J Biomed Inform (2009) 4.16
Natural language processing: an introduction. J Am Med Inform Assoc (2011) 3.50
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). Nat Biotechnol (2008) 3.43
Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. J Am Med Inform Assoc (2011) 3.14
Diagnosis of gastrointestinal stromal tumors: a consensus approach. Int J Surg Pathol (2002) 2.95
Mitochondrial DNA damage can promote atherosclerosis independently of reactive oxygen species through effects on smooth muscle cells and monocytes and correlates with higher-risk plaques in humans. Circulation (2013) 2.94
A multidisciplinary approach to honest broker services for tissue banks and clinical data: a pragmatic and practical model. Cancer (2008) 2.56
iDASH: integrating data for analysis, anonymization, and sharing. J Am Med Inform Assoc (2011) 2.51
High prevalence of screening-detected prostate cancer among Afro-Caribbeans: the Tobago Prostate Cancer Survey. Cancer Epidemiol Biomarkers Prev (2002) 2.46
Accuracy of three classifiers of acute gastrointestinal syndrome for syndromic surveillance. Proc AMIA Symp (2002) 2.43
The development of common data elements for a multi-institute prostate cancer tissue bank: the Cooperative Prostate Cancer Tissue Resource (CPCTR) experience. BMC Cancer (2005) 2.35
Towards a data sharing culture: recommendations for leadership from academic health centers. PLoS Med (2008) 2.31
Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. Acad Med (2009) 2.25
Automated syndromic surveillance for the 2002 Winter Olympics. J Am Med Inform Assoc (2003) 2.24
The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. J Biomed Inform (2010) 2.10
Using natural language processing to improve efficiency of manual chart abstraction in research: the case of breast cancer recurrence. Am J Epidemiol (2014) 2.09
An informatics model for tissue banks--lessons learned from the Cooperative Prostate Cancer Tissue Resource. BMC Cancer (2006) 1.97
Natural Language Processing methods and systems for biomedical ontology learning. J Biomed Inform (2010) 1.95
High Incidence of Somatic BAP1 alterations in sporadic malignant mesothelioma. J Thorac Oncol (2015) 1.93
Anaphoric relations in the clinical narrative: corpus creation. J Am Med Inform Assoc (2011) 1.91
The development and deployment of Common Data Elements for tissue banks for translational research in cancer - an emerging standard based approach for the Mesothelioma Virtual Tissue Bank. BMC Cancer (2008) 1.88
Differences in gene expression in prostate cancer, normal appearing prostate tissue adjacent to cancer and prostate tissue from cancer free organ donors. BMC Cancer (2005) 1.87
BAFF receptor deficiency reduces the development of atherosclerosis in mice--brief report. Arterioscler Thromb Vasc Biol (2012) 1.87
The cooperative prostate cancer tissue resource: a specimen and data resource for cancer researchers. Clin Cancer Res (2004) 1.85
A novel cross-disciplinary multi-institute approach to translational cancer research: lessons learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC). Cancer Inform (2007) 1.76
The tissue microarray data exchange specification: implementation by the Cooperative Prostate Cancer Tissue Resource. BMC Bioinformatics (2004) 1.74
Electronic interpretation of chest radiograph reports to detect central venous catheters. Infect Control Hosp Epidemiol (2003) 1.66
Evaluation of an intelligent tutoring system in pathology: effects of external representation on performance gains, metacognition, and acceptance. J Am Med Inform Assoc (2007) 1.61
A system for sharing routine surgical pathology specimens across institutions: the Shared Pathology Informatics Network. Hum Pathol (2007) 1.59
Next generation sequencing in clinical medicine: Challenges and lessons for pathology and biomedical informatics. J Pathol Inform (2012) 1.58
Heuristic sample selection to minimize reference standard training set for a part-of-speech tagger. J Am Med Inform Assoc (2007) 1.57
Coreference resolution: a review of general methodologies and applications in the clinical domain. J Biomed Inform (2011) 1.56
Design and analysis of a content-based pathology image retrieval system. IEEE Trans Inf Technol Biomed (2003) 1.55
The CAP cancer protocols--a case study of caCORE based data standards implementation to integrate with the Cancer Biomedical Informatics Grid. BMC Med Inform Decis Mak (2006) 1.53
Provider management of and satisfaction with laboratory testing in the nursing home setting: results of a national internet-based survey. J Am Med Dir Assoc (2009) 1.52
Telepathology for patient care: what am I getting myself into? Adv Anat Pathol (2010) 1.50
Tests for finding complex patterns of differential expression in cancers: towards individualized medicine. BMC Bioinformatics (2004) 1.49
Rapid deployment of an electronic disease surveillance system in the state of Utah for the 2002 Olympic Winter Games. Proc AMIA Symp (2002) 1.46
Automated detection of heuristics and biases among pathologists in a computer-based system. Adv Health Sci Educ Theory Pract (2012) 1.46
Database construction for improving patient safety by examining pathology errors. Am J Clin Pathol (2005) 1.39
The precancers: waiting for a classification. Hum Pathol (2003) 1.39
Security and privacy requirements for a multi-institutional cancer research data grid: an interview-based study. BMC Med Inform Decis Mak (2009) 1.37
Pharmacological characterisation of a rat model of incisional pain. Br J Pharmacol (2003) 1.35
Automated clinical annotation of tissue bank specimens. Stud Health Technol Inform (2004) 1.35
Public sharing of research datasets: a pilot study of associations. J Informetr (2010) 1.33
Standards to support information systems integration in anatomic pathology. Arch Pathol Lab Med (2009) 1.32
Developing a natural language processing application for measuring the quality of colonoscopy procedures. J Am Med Inform Assoc (2011) 1.28
Optimizing A syndromic surveillance text classifier for influenza-like illness: Does document source matter? AMIA Annu Symp Proc (2008) 1.27
Borderline ovarian tumors: diverse contemporary viewpoints on terminology and diagnostic criteria with illustrative images. Hum Pathol (2004) 1.25
Document-level classification of CT pulmonary angiography reports based on an extension of the ConText algorithm. J Biomed Inform (2011) 1.20
A bayesian method for evaluating and discovering disease loci associations. PLoS One (2011) 1.19
In vitro transcription amplification and labeling methods contribute to the variability of gene expression profiling with DNA microarrays. J Mol Diagn (2006) 1.14
Availability and quality of paraffin blocks identified in pathology archives: a multi-institutional study by the Shared Pathology Informatics Network (SPIN). BMC Cancer (2007) 1.14
Prevalence of incidental prostate cancer in the general population: a study of healthy organ donors. J Urol (2008) 1.14
Gastrointestinal stromal tumors: answers and questions. Hum Pathol (2002) 1.13
Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease. BMC Bioinformatics (2009) 1.11
A system for coreference resolution for the clinical narrative. J Am Med Inform Assoc (2012) 1.11
ICD-11 for quality and safety: overview of the WHO Quality and Safety Topic Advisory Group. Int J Qual Health Care (2013) 1.11
Perceptual analysis of the reading of dermatopathology virtual slides by pathology residents. Arch Pathol Lab Med (2012) 1.11
Suicide decline in Australia: where did the cases go? Aust N Z J Public Health (2009) 1.10
Current issues in biomedical text mining and natural language processing. J Biomed Inform (2009) 1.09
Automating tissue bank annotation from pathology reports - comparison to a gold standard expert annotation set. AMIA Annu Symp Proc (2005) 1.09
Synoptic tool for reporting of hematological and lymphoid neoplasms based on World Health Organization classification and College of American Pathologists checklist. BMC Cancer (2007) 1.06
Pathology informatics fellowship retreats: The use of interactive scenarios and case studies as pathology informatics teaching tools. J Pathol Inform (2012) 1.05
A common type system for clinical natural language processing. J Biomed Semantics (2013) 1.04
Data sources for improving estimates of the global burden of injuries: call for contributors. PLoS Med (2009) 1.03
SPIN query tools for de-identified research on a humongous database. AMIA Annu Symp Proc (2005) 1.03
Evaluating the effectiveness of four contextual features in classifying annotated clinical conditions in emergency department reports. AMIA Annu Symp Proc (2006) 1.01
Using chief complaints for syndromic surveillance: a review of chief complaint based classifiers in North America. J Biomed Inform (2013) 1.00
Automated ancillary cancer history classification for mesothelioma patients from free-text clinical reports. J Pathol Inform (2010) 1.00
MFGE8 inhibits inflammasome-induced IL-1β production and limits postischemic cerebral injury. J Clin Invest (2013) 1.00
The Virtual Slide Set - a curriculum development system for digital microscopy. AMIA Annu Symp Proc (2003) 1.00
How primary care physicians' attitudes toward risk and uncertainty affect their use of electronic information resources. J Med Libr Assoc (2007) 1.00
Methodology to develop and evaluate a semantic representation for NLP. AMIA Annu Symp Proc (2009) 0.99
A new focus of visceral leishmaniasis in the Himalayas, India. J Vector Borne Dis (2009) 0.99
Identifying data sharing in biomedical literature. AMIA Annu Symp Proc (2008) 0.99
Evaluation of preprocessing techniques for chief complaint classification. J Biomed Inform (2007) 0.98
Mental health and socio-economic variations in Australian suicide. Soc Sci Med (2005) 0.97
Perforated acute appendicitis in a term neonate. Indian J Pediatr (2004) 0.97
Immunohistochemical comparison of gastrointestinal stromal tumor and solitary fibrous tumor. Arch Pathol Lab Med (2002) 0.97
Assessing the performance characteristics of signals used by a clinical event monitor to detect adverse drug reactions in the nursing home. AMIA Annu Symp Proc (2008) 0.96
The history of pathology informatics: A global perspective. J Pathol Inform (2013) 0.96