Published in Biochemistry on September 07, 2004
Total and functional parasite specific IgE responses in Plasmodium falciparum-infected patients exhibiting different clinical status. Malar J (2007) 1.15
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Rule-based modeling of biochemical systems with BioNetGen. Methods Mol Biol (2009) 3.47
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A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity. Biosystems (2005) 2.36
Mathematical and computational models of immune-receptor signalling. Nat Rev Immunol (2004) 2.06
ADAM10 is a principal 'sheddase' of the low-affinity immunoglobulin E receptor CD23. Nat Immunol (2006) 1.83
Design of gene circuits: lessons from bacteria. Nat Rev Genet (2004) 1.82
Investigation of early events in Fc epsilon RI-mediated signaling using a detailed mathematical model. J Immunol (2003) 1.78
IgE stimulates human and mouse arterial cell apoptosis and cytokine expression and promotes atherogenesis in Apoe-/- mice. J Clin Invest (2011) 1.77
Kinetic Monte Carlo method for rule-based modeling of biochemical networks. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 1.76
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ADAM10 is essential for Notch2-dependent marginal zone B cell development and CD23 cleavage in vivo. J Exp Med (2010) 1.47
CD8 kinetically promotes ligand binding to the T-cell antigen receptor. Biophys J (2005) 1.38
On imposing detailed balance in complex reaction mechanisms. Biophys J (2006) 1.28
A brief overview of mouse models of pulmonary arterial hypertension: problems and prospects. Am J Physiol Lung Cell Mol Physiol (2012) 1.18
Simulation of large-scale rule-based models. Bioinformatics (2009) 1.18
Multiple functions of a feed-forward-loop gene circuit. J Mol Biol (2005) 1.17
Stochastic effects and bistability in T cell receptor signaling. J Theor Biol (2008) 1.17
Cutting edge: mast cells critically augment myeloid-derived suppressor cell activity. J Immunol (2012) 1.15
Trivalent antigens for degranulation of mast cells. Org Lett (2007) 1.14
Soluble CD23 monomers inhibit and oligomers stimulate IGE synthesis in human B cells. J Biol Chem (2007) 1.12
How to deal with large models? Mol Syst Biol (2009) 1.12
T cell receptor-ligand interactions: a conformational preequilibrium or an induced fit. Proc Natl Acad Sci U S A (2004) 1.10
Modeling multivalent ligand-receptor interactions with steric constraints on configurations of cell-surface receptor aggregates. Biophys J (2010) 1.09
Design principles for regulator gene expression in a repressible gene circuit. J Mol Biol (2003) 1.07
Improved predictions of transcription factor binding sites using physicochemical features of DNA. Nucleic Acids Res (2012) 1.06
Modeling the early signaling events mediated by FcepsilonRI. Mol Immunol (2002) 1.05
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Interruption of the NF-kappaB pathway by Bay 11-7082 promotes UCN-01-mediated mitochondrial dysfunction and apoptosis in human multiple myeloma cells. Blood (2003) 1.04
Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems. Wiley Interdiscip Rev Syst Biol Med (2013) 1.04
Lyn but not Fyn kinase controls IgG-mediated systemic anaphylaxis. J Immunol (2012) 1.03
Death of a dogma or enforcing the artificial: monomeric IgE binding may initiate mast cell response by inducing its receptor aggregation. J Immunol (2005) 1.03
A quantitative approach for studying IgE-FcepsilonRI aggregation. Mol Immunol (2002) 1.02
Regulation of the mast cell response to the type 1 Fc epsilon receptor. Immunol Rev (2007) 1.02
The level of IgE produced by a B cell is regulated by norepinephrine in a p38 MAPK- and CD23-dependent manner. J Immunol (2006) 1.02
Carbon-fate maps for metabolic reactions. Bioinformatics (2007) 1.01
ADAM10 overexpression shifts lympho- and myelopoiesis by dysregulating site 2/site 3 cleavage products of Notch. J Immunol (2011) 0.99
Proteins as electronic materials: electron transport through solid-state protein monolayer junctions. J Am Chem Soc (2010) 0.99
Electron transfer reactivity of type zero Pseudomonas aeruginosa azurin. J Am Chem Soc (2011) 0.99
Kinetic evidence for a ligand-binding-induced conformational transition in the T cell receptor. Proc Natl Acad Sci U S A (2007) 0.98
Intestinal epithelial CD23 mediates enhanced antigen transport in allergy: evidence for novel splice forms. Am J Physiol Gastrointest Liver Physiol (2003) 0.97
Electron transfer among the CuA-, heme b- and a3-centers of Thermus thermophilus cytochrome ba3. FEBS Lett (2006) 0.97
CD23 Sheddase A disintegrin and metalloproteinase 10 (ADAM10) is also required for CD23 sorting into B cell-derived exosomes. J Biol Chem (2010) 0.96
Exploring higher-order EGFR oligomerisation and phosphorylation--a combined experimental and theoretical approach. Mol Biosyst (2013) 0.96
IL-21 dependent IgE production in human and mouse in vitro culture systems is cell density and cell division dependent and is augmented by IL-10. Cell Immunol (2006) 0.96
Recruitment of the adaptor protein Grb2 to EGFR tetramers. Biochemistry (2014) 0.95
Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites. PLoS Comput Biol (2010) 0.95
Epoxyeicosatrienoic acids are involved in the C(70) fullerene derivative-induced control of allergic asthma. J Allergy Clin Immunol (2012) 0.95
Scaffold-mediated nucleation of protein signaling complexes: elementary principles. Math Biosci (2011) 0.95
Compartmentalization of the Type I Fc epsilon receptor and MAFA on mast cell membranes. Biophys Chem (2006) 0.94
The Brucella TIR-like protein TcpB interacts with the death domain of MyD88. Biochem Biophys Res Commun (2011) 0.93
Differential T cell-mediated regulation of CD23 (Fc epsilonRII) in B cells and follicular dendritic cells. J Immunol (2006) 0.92
Transmembrane domains in the functions of Fc receptors. Biophys Chem (2003) 0.92
Structure of factor H-binding protein B (FhbB) of the periopathogen, Treponema denticola: insights into progression of periodontal disease. J Biol Chem (2012) 0.92
Identification and immunological characterization of three potential vaccinogens against Cryptosporidium species. Clin Vaccine Immunol (2011) 0.91
Prediction of oxidoreductase-catalyzed reactions based on atomic properties of metabolites. Bioinformatics (2006) 0.91
Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds. Bioinformatics (2011) 0.91
CD23 trimers are preassociated on the cell surface even in the absence of its ligand, IgE. J Immunol (2004) 0.91
Temperature-dependent solid-state electron transport through bacteriorhodopsin: experimental evidence for multiple transport paths through proteins. J Am Chem Soc (2012) 0.91
Redox activity distinguishes solid-state electron transport from solution-based electron transfer in a natural and artificial protein: cytochrome C and hemin-doped human serum albumin. Phys Chem Chem Phys (2013) 0.90
Depicting signaling cascades. Nat Biotechnol (2006) 0.90
A disintegrin and metalloproteinase 10 regulates antibody production and maintenance of lymphoid architecture. J Immunol (2011) 0.90
Proteins as solid-state electronic conductors. Acc Chem Res (2010) 0.90
'On-the-fly' or 'generate-first' modeling? Nat Biotechnol (2005) 0.89
A computational model for early events in B cell antigen receptor signaling: analysis of the roles of Lyn and Fyn. J Immunol (2012) 0.89
Selected papers from the Fourth Annual q-bio Conference on Cellular Information Processing. Phys Biol (2011) 0.89
Regulation of mast cell activation by complement-derived peptides. Immunol Lett (2004) 0.89
In vivo murine CD23 destabilization enhances CD23 shedding and IgE synthesis. Cell Immunol (2007) 0.89
Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism. Ann N Y Acad Sci (2007) 0.88
The emergence of ADAM10 as a regulator of lymphocyte development and autoimmunity. Mol Immunol (2011) 0.88
Binding of nucleoid-associated protein fis to DNA is regulated by DNA breathing dynamics. PLoS Comput Biol (2013) 0.88
Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signaling. BMC Syst Biol (2012) 0.88
Hierarchical graphs for rule-based modeling of biochemical systems. BMC Bioinformatics (2011) 0.87
An unusual inhibitory receptor--the mast cell function-associated antigen (MAFA). Mol Immunol (2002) 0.87
Special section dedicated to The Sixth q-bio Conference: meeting report and preface. Phys Biol (2013) 0.87
Electron-mediating Cu(A) centers in proteins: a comparative high field (1)H ENDOR study. J Am Chem Soc (2002) 0.87
Q-bio 2007: a watershed moment in modern biology. Mol Syst Biol (2007) 0.87
CD23-dependent transcytosis of IgE and immune complex across the polarized human respiratory epithelial cells. J Immunol (2011) 0.87
Myeloid-derived suppressor cells enhance IgE-mediated mast cell responses. J Leukoc Biol (2013) 0.86
Necessity of the stalk region for immunoglobulin E interaction with CD23. Immunology (2002) 0.86
The mast cell function-associated antigen and its interactions with the type I Fcepsilon receptor. Biochemistry (2002) 0.86
GetBonNie for building, analyzing and sharing rule-based models. Bioinformatics (2009) 0.86
Intramolecular electron transfer in cytochrome cd(1) nitrite reductase from Pseudomonas stutzeri; kinetics and thermodynamics. Biophys Chem (2002) 0.86
Glutamate signaling through the kainate receptor enhances human immunoglobulin production. J Neuroimmunol (2011) 0.86
Disturbed follicular architecture in B cell A disintegrin and metalloproteinase (ADAM)10 knockouts is mediated by compensatory increases in ADAM17 and TNF-α shedding. J Immunol (2013) 0.86
129/SvJ mice have mutated CD23 and hyper IgE. Cell Immunol (2008) 0.85
Computational model for autophagic vesicle dynamics in single cells. Autophagy (2012) 0.85
Intracellular trafficking of CD23: differential regulation in humans and mice by both extracellular and intracellular exons. J Immunol (2005) 0.85
Temperature and force dependence of nanoscale electron transport via the Cu protein azurin. ACS Nano (2012) 0.85
Dok protein family members are involved in signaling mediated by the type 1 Fcepsilon receptor. Eur J Immunol (2003) 0.85
Solid-state electron transport across azurin: from a temperature-independent to a temperature-activated mechanism. J Am Chem Soc (2011) 0.84
Electronic transport via proteins. Adv Mater (2014) 0.84
Temperature effect on IgE binding to CD23 versus Fc epsilon RI. J Immunol (2003) 0.83
The efficiency of reactant site sampling in network-free simulation of rule-based models for biochemical systems. Phys Biol (2011) 0.83
Allosteric control of internal electron transfer in cytochrome cd1 nitrite reductase. Proc Natl Acad Sci U S A (2003) 0.83
Intramolecular electron transfer in laccases. FEBS J (2011) 0.83
Optimal aggregation of FcεRI with a structurally defined trivalent ligand overrides negative regulation driven by phosphatases. ACS Chem Biol (2014) 0.83
Intramolecular electron transfer in Pseudomonas aeruginosa cd(1) nitrite reductase: thermodynamics and kinetics. Biophys J (2009) 0.83
Rates and Equilibrium of CuA to heme a electron transfer in Paracoccus denitrificans cytochrome c oxidase. Biophys J (2005) 0.83
Effect of cell density on in vitro mouse immunoglobulin E production. Immunology (2002) 0.83