Published in Mol Microbiol on November 01, 2004
Regulatory RNAs in bacteria. Cell (2009) 9.57
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet (2008) 5.23
Hfq and its constellation of RNA. Nat Rev Microbiol (2011) 4.94
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes Dev (2005) 3.66
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proc Natl Acad Sci U S A (2009) 3.04
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. Genes Dev (2006) 2.59
Polyadenylation of ribosomal RNA in human cells. Nucleic Acids Res (2006) 1.93
Structural basis for RNA 3'-end recognition by Hfq. Proc Natl Acad Sci U S A (2011) 1.73
Polyadenylation and degradation of human mitochondrial RNA: the prokaryotic past leaves its mark. Mol Cell Biol (2005) 1.67
PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action. Proc Natl Acad Sci U S A (2011) 1.64
Bacterial small RNA-based negative regulation: Hfq and its accomplices. J Biol Chem (2013) 1.63
The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Res (2007) 1.55
Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition. Proc Natl Acad Sci U S A (2012) 1.51
Disruption of small RNA signaling caused by competition for Hfq. Proc Natl Acad Sci U S A (2010) 1.51
Stable PNPase RNAi silencing: its effect on the processing and adenylation of human mitochondrial RNA. RNA (2007) 1.43
Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence. Proc Natl Acad Sci U S A (2011) 1.38
The RNA binding protein Hfq interacts specifically with tRNAs. RNA (2008) 1.35
The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells. Nucleic Acids Res (2006) 1.33
RNA under attack: cellular handling of RNA damage. Crit Rev Biochem Mol Biol (2009) 1.32
Role of polynucleotide phosphorylase in sRNA function in Escherichia coli. RNA (2011) 1.30
The RNA chaperone Hfq is involved in stress response and virulence in Neisseria meningitidis and is a pleiotropic regulator of protein expression. Infect Immun (2009) 1.27
The small RNA chaperone Hfq is required for the virulence of Yersinia pseudotuberculosis. Infect Immun (2010) 1.25
Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets. J Mol Biol (2013) 1.23
Cycling of RNAs on Hfq. RNA Biol (2013) 1.22
The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq. RNA (2012) 1.22
New ways to meet your (3') end oligouridylation as a step on the path to destruction. Genes Dev (2008) 1.19
Identification and characterization of noncoding small RNAs in Streptococcus pneumoniae serotype 2 strain D39. J Bacteriol (2010) 1.19
An ortholog of the Ro autoantigen functions in 23S rRNA maturation in D. radiodurans. Genes Dev (2007) 1.17
Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq. Genes Dev (2012) 1.16
Structure and RNA-binding properties of the bacterial LSm protein Hfq. RNA Biol (2013) 1.16
Cooperation of Escherichia coli Hfq hexamers in DsrA binding. Genes Dev (2011) 1.15
Hfq negatively regulates type III secretion in EHEC and several other pathogens. Mol Microbiol (2009) 1.12
The stoichiometry of the Escherichia coli Hfq protein bound to RNA. RNA (2011) 1.10
Hfq is a global regulator that controls the pathogenicity of Staphylococcus aureus. PLoS One (2010) 1.09
Hfq affects the expression of the LEE pathogenicity island in enterohaemorrhagic Escherichia coli. Mol Microbiol (2009) 1.08
Archaeal and eukaryotic homologs of Hfq: A structural and evolutionary perspective on Sm function. RNA Biol (2013) 1.07
Lsm proteins and Hfq: Life at the 3' end. RNA Biol (2013) 1.05
Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq. Nucleic Acids Res (2011) 1.05
Initiation of mRNA decay in bacteria. Cell Mol Life Sci (2013) 1.04
sRNAs and the virulence of Salmonella enterica serovar Typhimurium. RNA Biol (2012) 1.04
RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase R. Nucleic Acids Res (2006) 1.04
Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY. Nucleic Acids Res (2012) 1.03
Licensing and due process in the turnover of bacterial RNA. RNA Biol (2013) 1.02
The response regulator SprE (RssB) is required for maintaining poly(A) polymerase I-degradosome association during stationary phase. J Bacteriol (2010) 1.01
Bacterial/archaeal/organellar polyadenylation. Wiley Interdiscip Rev RNA (2011) 1.00
Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria. Nucleic Acids Res (2011) 1.00
Hfq affects mRNA levels independently of degradation. BMC Mol Biol (2010) 0.99
Addition of poly(A) and heteropolymeric 3' ends in Bacillus subtilis wild-type and polynucleotide phosphorylase-deficient strains. J Bacteriol (2005) 0.98
Sm-like protein Hfq: location of the ATP-binding site and the effect of ATP on Hfq-- RNA complexes. Protein Sci (2007) 0.97
Proteomic alterations explain phenotypic changes in Sinorhizobium meliloti lacking the RNA chaperone Hfq. J Bacteriol (2010) 0.96
Hfq variant with altered RNA binding functions. Nucleic Acids Res (2006) 0.96
Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation. RNA Biol (2014) 0.96
Impact of Hfq on global gene expression and virulence in Klebsiella pneumoniae. PLoS One (2011) 0.92
Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNA. RNA Biol (2010) 0.91
CCA addition to tRNA: implications for tRNA quality control. IUBMB Life (2010) 0.91
The interplay of Hfq, poly(A) polymerase I and exoribonucleases at the 3' ends of RNAs resulting from Rho-independent termination: A tentative model. RNA Biol (2013) 0.90
A brief survey of mRNA surveillance. Trends Biochem Sci (2011) 0.90
The poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated by RNase R. RNA (2008) 0.89
The Sinorhizobium meliloti RNA chaperone Hfq mediates symbiosis of S. meliloti and alfalfa. J Bacteriol (2010) 0.89
Hfq stimulates the activity of the CCA-adding enzyme. BMC Mol Biol (2007) 0.89
RNA-binding proteins involved in post-transcriptional regulation in bacteria. Front Microbiol (2015) 0.88
Polyadenylation helps regulate functional tRNA levels in Escherichia coli. Nucleic Acids Res (2012) 0.87
Expression, crystallization and preliminary crystallographic analysis of RNA-binding protein Hfq (YmaH) from Bacillus subtilis in complex with an RNA aptamer. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.87
The response regulator SprE (RssB) modulates polyadenylation and mRNA stability in Escherichia coli. J Bacteriol (2009) 0.86
Essential requirements for robust signaling in Hfq dependent small RNA networks. PLoS Comput Biol (2011) 0.86
Under the Tucson sun: a meeting in the desert on mRNA decay. RNA (2004) 0.86
Riboregulators and the role of Hfq in photosynthetic bacteria. RNA Biol (2014) 0.85
Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti. RNA Biol (2014) 0.84
Deregulation of poly(A) polymerase I in Escherichia coli inhibits protein synthesis and leads to cell death. Nucleic Acids Res (2012) 0.82
RNA binding by Hfq and ring-forming (L)Sm proteins: a trade-off between optimal sequence readout and RNA backbone conformation. RNA Biol (2014) 0.82
Interactions of the RNA-binding protein Hfq with cspA mRNA, encoding the major cold shock protein. J Bacteriol (2010) 0.81
Identifying and characterizing Hfq-RNA interactions. Methods (2013) 0.81
Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens. PLoS One (2014) 0.80
The ribonuclease polynucleotide phosphorylase can interact with small regulatory RNAs in both protective and degradative modes. RNA (2016) 0.80
Riboregulation in plant-associated α-proteobacteria. RNA Biol (2014) 0.80
Identification of a Novel Small Non-Coding RNA Modulating the Intracellular Survival of Brucella melitensis. Front Microbiol (2015) 0.79
Ribonucleoprotein particles of bacterial small non-coding RNA IsrA (IS61 or McaS) and its interaction with RNA polymerase core may link transcription to mRNA fate. Nucleic Acids Res (2015) 0.78
Transcription regulation of the Escherichia coli pcnB gene coding for poly(A) polymerase I: roles of ppGpp, DksA and sigma factors. Mol Genet Genomics (2010) 0.78
Large-scale identification of small noncoding RNA with strand-specific deep sequencing and characterization of a novel virulence-related sRNA in Brucella melitensis. Sci Rep (2016) 0.77
The SmAP1/2 proteins of the crenarchaeon Sulfolobus solfataricus interact with the exosome and stimulate A-rich tailing of transcripts. Nucleic Acids Res (2017) 0.77
RNA-based mechanisms of virulence control in Enterobacteriaceae. RNA Biol (2016) 0.76
RNase E-based degradosome modulates polyadenylation of mRNAs after Rho-independent transcription terminators in Escherichia coli. Mol Microbiol (2016) 0.76
Cinnamon Oil Inhibits Shiga Toxin Type 2 Phage Induction and Shiga Toxin Type 2 Production in Escherichia coli O157:H7. Appl Environ Microbiol (2016) 0.76
In vivo characterization of an Hfq protein encoded by the Bacillus anthracis virulence plasmid pXO1. BMC Microbiol (2017) 0.75
Inhibition of homologous phosphorolytic ribonucleases by citrate may represent an evolutionarily conserved communicative link between RNA degradation and central metabolism. Nucleic Acids Res (2017) 0.75
The RNA-Binding Chaperone Hfq Is an Important Global Regulator of Gene Expression in Pasteurella multocida and Plays a Crucial Role in Production of a Number of Virulence Factors, Including Hyaluronic Acid Capsule. Infect Immun (2016) 0.75
Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: conservation of the lateral RNA-binding mode. Acta Crystallogr D Struct Biol (2017) 0.75
The rph-1 encoded truncated RNase PH protein inhibits RNase P maturation of pre-tRNAs with short leader sequences in the absence of RppH. J Bacteriol (2017) 0.75
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. Genes Dev (2006) 2.59
Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli. Genes Dev (2002) 2.07
Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay. Mol Microbiol (2003) 1.44
The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells. Nucleic Acids Res (2006) 1.33
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays. Nucleic Acids Res (2010) 1.32
RNase Z in Escherichia coli plays a significant role in mRNA decay. Mol Microbiol (2006) 1.22
RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E. Mol Microbiol (2003) 1.07
RNAsnap™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria. Nucleic Acids Res (2012) 1.05
De novo computational prediction of non-coding RNA genes in prokaryotic genomes. Bioinformatics (2009) 1.04
Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli. Nucleic Acids Res (2007) 1.01
Bacterial/archaeal/organellar polyadenylation. Wiley Interdiscip Rev RNA (2011) 1.00
Analysis of RNA decay, processing, and polyadenylation in Escherichia coli and other prokaryotes. Methods Enzymol (2008) 1.00
Ribonuclease P processes polycistronic tRNA transcripts in Escherichia coli independent of ribonuclease E. Nucleic Acids Res (2007) 0.99
RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters. Mol Microbiol (2002) 0.96
Processing of the Escherichia coli leuX tRNA transcript, encoding tRNA(Leu5), requires either the 3'-->5' exoribonuclease polynucleotide phosphorylase or RNase P to remove the Rho-independent transcription terminator. Nucleic Acids Res (2009) 0.93
Polyadenylation of Escherichia coli transcripts plays an integral role in regulating intracellular levels of polynucleotide phosphorylase and RNase E. Mol Microbiol (2002) 0.91
Polyadenylation helps regulate functional tRNA levels in Escherichia coli. Nucleic Acids Res (2012) 0.87
Intragenic suppressors of temperature-sensitive rne mutations lead to the dissociation of RNase E activity on mRNA and tRNA substrates in Escherichia coli. Nucleic Acids Res (2008) 0.87
Single amino acid changes in the predicted RNase H domain of Escherichia coli RNase G lead to complementation of RNase E deletion mutants. RNA (2010) 0.87
The response regulator SprE (RssB) modulates polyadenylation and mRNA stability in Escherichia coli. J Bacteriol (2009) 0.86
Deregulation of poly(A) polymerase I in Escherichia coli inhibits protein synthesis and leads to cell death. Nucleic Acids Res (2012) 0.82
In vivo analysis of polyadenylation in prokaryotes. Methods Mol Biol (2014) 0.78
Processing of the seven valine tRNAs in Escherichia coli involves novel features of RNase P. Nucleic Acids Res (2014) 0.77
Endonucleolytic cleavages by RNase E generate the mature 3' termini of the three proline tRNAs in Escherichia coli. Nucleic Acids Res (2016) 0.76
Messenger RNA Decay. Ecosal Plus (2007) 0.75