Bacterial/archaeal/organellar polyadenylation.

Bacterial transcriptomics: what is beyond the RNA horiz-ome? Nat Rev Microbiol (2011) 1.39

Initiation of mRNA decay in bacteria. Cell Mol Life Sci (2013) 1.04

Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity. Wiley Interdiscip Rev RNA (2013) 1.04

An RNA degradation machine sculpted by Ro autoantigen and noncoding RNA. Cell (2013) 1.02

Emerging roles for the Ro 60-kDa autoantigen in noncoding RNA metabolism. Wiley Interdiscip Rev RNA (2011) 1.02

The interplay of Hfq, poly(A) polymerase I and exoribonucleases at the 3' ends of RNAs resulting from Rho-independent termination: A tentative model. RNA Biol (2013) 0.90

Polyadenylation helps regulate functional tRNA levels in Escherichia coli. Nucleic Acids Res (2012) 0.87

Comprehensive insights into transcriptional adaptation of intracellular mycobacteria by microbe-enriched dual RNA sequencing. BMC Genomics (2015) 0.86

How bacterial cells keep ribonucleases under control. FEMS Microbiol Rev (2015) 0.84

SNP detection from de novo transcriptome sequencing in the bivalve Macoma balthica: marker development for evolutionary studies. PLoS One (2012) 0.84

Deregulation of poly(A) polymerase I in Escherichia coli inhibits protein synthesis and leads to cell death. Nucleic Acids Res (2012) 0.82

Diurnal Oscillations in Liver Mass and Cell Size Accompany Ribosome Assembly Cycles. Cell (2017) 0.81

Probable presence of an ubiquitous cryptic mitochondrial gene on the antisense strand of the cytochrome oxidase I gene. Biol Direct (2011) 0.79

RNase E forms a complex with polynucleotide phosphorylase in cyanobacteria via a cyanobacterial-specific nonapeptide in the noncatalytic region. RNA (2014) 0.79

Ribonucleoprotein particles of bacterial small non-coding RNA IsrA (IS61 or McaS) and its interaction with RNA polymerase core may link transcription to mRNA fate. Nucleic Acids Res (2015) 0.78

Synthesis and evaluation of an alkyne-modified ATP analog for enzymatic incorporation into RNA. Bioorg Med Chem Lett (2016) 0.78

Dual 3'Seq using deepSuperSAGE uncovers transcriptomes of interacting Salmonella enterica Typhimurium and human host cells. BMC Genomics (2015) 0.78

Molecular basis for cytoplasmic RNA surveillance by uridylation-triggered decay in Drosophila. EMBO J (2016) 0.77

RNase E-based degradosome modulates polyadenylation of mRNAs after Rho-independent transcription terminators in Escherichia coli. Mol Microbiol (2016) 0.76

Archaeal DnaG contains a conserved N-terminal RNA-binding domain and enables tailing of rRNA by the exosome. Nucleic Acids Res (2014) 0.75

Comparative Transcriptomic Approaches Exploring Contamination Stress Tolerance in Salix sp. Reveal the Importance for a Metaorganismal de Novo Assembly Approach for Nonmodel Plants. Plant Physiol (2016) 0.75

Transcriptome Changes during the Life Cycle of the Red Sponge, Mycale phyllophila (Porifera, Demospongiae, Poecilosclerida). Genes (Basel) (2015) 0.75

The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature (1997) 33.47

tRNA punctuation model of RNA processing in human mitochondria. Nature (1981) 8.48

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol (2001) 7.56

Mechanism and regulation of mRNA polyadenylation. Genes Dev (1997) 7.48

Mutations in a new chromosomal gene of Escherichia coli K-12, pcnB, reduce plasmid copy number of pBR322 and its derivatives. Mol Gen Genet (1986) 5.87

Purification and characterization of adenosine triphosphate: ribonucleic acid adenyltransferase from Escherichia coli. Eur J Biochem (1973) 4.06

Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation. Cell (1994) 4.02

RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes Dev (2005) 3.66

Plastid evolution. Annu Rev Plant Biol (2008) 3.39

DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history. Nucleic Acids Res (1999) 3.32

The computer simulation of RNA folding pathways using a genetic algorithm. J Mol Biol (1995) 3.29

The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal. Nature (2008) 3.29

Cellular applications of 31P and 13C nuclear magnetic resonance. Science (1979) 3.14

The archaeal exosome core is a hexameric ring structure with three catalytic subunits. Nat Struct Mol Biol (2005) 3.07

Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proc Natl Acad Sci U S A (2009) 3.04

Distinctive features of the 5'-terminal sequences of the human mitochondrial mRNAs. Nature (1981) 3.01

A history of poly A sequences: from formation to factors to function. Prog Nucleic Acid Res Mol Biol (2002) 2.93

Ancient invasions: from endosymbionts to organelles. Science (2004) 2.87

Polyadenylylation helps regulate mRNA decay in Escherichia coli. Proc Natl Acad Sci U S A (1995) 2.85

RNA quality control in eukaryotes. Cell (2007) 2.83

Mutational analysis of mammalian poly(A) polymerase identifies a region for primer binding and catalytic domain, homologous to the family X polymerases, and to other nucleotidyltransferases. EMBO J (1996) 2.64

Ribonucleic acid-dependent ribonucleotide incorporation. I. Purification and properties of the enzyme. J Biol Chem (1962) 2.62

Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation. PLoS Biol (2008) 2.61

CCA-adding enzymes and poly(A) polymerases are all members of the same nucleotidyltransferase superfamily: characterization of the CCA-adding enzyme from the archaeal hyperthermophile Sulfolobus shibatae. RNA (1996) 2.59

Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I. Proc Natl Acad Sci U S A (2000) 2.57

3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc Natl Acad Sci U S A (1998) 2.56

The biochemistry of polyadenylation. Trends Biochem Sci (1996) 2.55

The RNase E of Escherichia coli is a membrane-binding protein. Mol Microbiol (2008) 2.46

An important role for RNase R in mRNA decay. Mol Cell (2005) 2.33

Polynucleotide phosphorylase functions both as a 3' right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli. Proc Natl Acad Sci U S A (2000) 2.32

The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. Mol Microbiol (2004) 2.32

Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex. Nature (2006) 2.31

RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation. Nature (1995) 2.26

Identification of the gene for an Escherichia coli poly(A) polymerase. Proc Natl Acad Sci U S A (1992) 2.22

Polynucleotide biosynthesis: formation of a sequence of adenylate units from adenosine triphosphate by an enzyme from thymus nuclei. J Biol Chem (1960) 2.20

Genetics and sequence analysis of the pcnB locus, an Escherichia coli gene involved in plasmid copy number control. J Bacteriol (1989) 2.18

Substrate recognition and catalysis by the exoribonuclease RNase R. J Biol Chem (2006) 2.17

Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II. J Biol Chem (2002) 2.15

Structural framework for the mechanism of archaeal exosomes in RNA processing. Mol Cell (2005) 2.12

Human mitochondrial mRNAs are stabilized with polyadenylation regulated by mitochondria-specific poly(A) polymerase and polynucleotide phosphorylase. J Biol Chem (2005) 2.02

The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation. Nucleic Acids Res (2003) 2.00

RNA quality control: degradation of defective transfer RNA. EMBO J (2002) 2.00

The Escherichia coli pcnB gene promotes adenylylation of antisense RNAI of ColE1-type plasmids in vivo and degradation of RNAI decay intermediates. Proc Natl Acad Sci U S A (1993) 1.99

mRNA degradation by processive 3'-5' exoribonucleases in vitro and the implications for prokaryotic mRNA decay in vivo. J Mol Biol (1991) 1.93

Polyadenylation of ribosomal RNA in human cells. Nucleic Acids Res (2006) 1.93

The poly(A) tail of mRNAs: bodyguard in eukaryotes, scavenger in bacteria. Cell (2002) 1.91

Uridine insertion/deletion RNA editing in trypanosome mitochondria: a complex business. RNA (2003) 1.85

Polyadenylation of stable RNA precursors in vivo. Proc Natl Acad Sci U S A (1998) 1.81

The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli. Nucleic Acids Res (2008) 1.80

Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism. Mol Microbiol (1999) 1.79

The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers. Mol Microbiol (2004) 1.77

Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase. Genes Dev (1999) 1.76

Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli. Proc Natl Acad Sci U S A (1995) 1.76

Polyadenylation promotes degradation of 3'-structured RNA by the Escherichia coli mRNA degradosome in vitro. J Biol Chem (1999) 1.74

Identification of a novel human nuclear-encoded mitochondrial poly(A) polymerase. Nucleic Acids Res (2004) 1.73

Polyadenylic acid sequences in E. coli messenger RNA. Nature (1975) 1.68

Polynucleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts. Mol Cell Biol (2001) 1.66

3' adenylation determines mRNA abundance and monitors completion of RNA editing in T. brucei mitochondria. EMBO J (2008) 1.63

Polyadenylation accelerates the degradation of the mitochondrial mRNA associated with cytoplasmic male sterility in sunflower. EMBO J (1999) 1.62

Action of RNase II and polynucleotide phosphorylase against RNAs containing stem-loops of defined structure. J Bacteriol (2000) 1.60

Addition of destabilizing poly (A)-rich sequences to endonuclease cleavage sites during the degradation of chloroplast mRNA. Proc Natl Acad Sci U S A (1996) 1.60

Messenger RNA stability in mitochondria: different means to an end. Trends Genet (2004) 1.57

Catalytic activation of multimeric RNase E and RNase G by 5'-monophosphorylated RNA. Proc Natl Acad Sci U S A (2004) 1.52

The mechanism of preferential degradation of polyadenylated RNA in the chloroplast. The exoribonuclease 100RNP/polynucleotide phosphorylase displays high binding affinity for poly(A) sequence. J Biol Chem (1997) 1.46

The yeast mitochondrial degradosome. Its composition, interplay between RNA helicase and RNase activities and the role in mitochondrial RNA metabolism. J Biol Chem (2002) 1.46

Roles of RNase E, RNase II and PNPase in the degradation of the rpsO transcripts of Escherichia coli: stabilizing function of RNase II and evidence for efficient degradation in an ams pnp rnb mutant. EMBO J (1994) 1.45

Characterization of the E.coli poly(A) polymerase: nucleotide specificity, RNA-binding affinities and RNA structure dependence. Nucleic Acids Res (2000) 1.45

The rpsO mRNA of Escherichia coli is polyadenylated at multiple sites resulting from endonucleolytic processing and exonucleolytic degradation. EMBO J (1996) 1.45

RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli. J Biol Chem (2003) 1.45

Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes. J Mol Biol (1998) 1.44

Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay. Mol Microbiol (2003) 1.44

Stable PNPase RNAi silencing: its effect on the processing and adenylation of human mitochondrial RNA. RNA (2007) 1.43

Investigation of a pathogenic mtDNA microdeletion reveals a translation-dependent deadenylation decay pathway in human mitochondria. Hum Mol Genet (2003) 1.42

Polyadenylation accelerates degradation of chloroplast mRNA. EMBO J (1996) 1.40

Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli. Mol Microbiol (2000) 1.40

Transcript-specific developmental regulation of polyadenylation in Trypanosoma brucei mitochondria. Mol Biochem Parasitol (1992) 1.39

Hfq affects the length and the frequency of short oligo(A) tails at the 3' end of Escherichia coli rpsO mRNAs. Nucleic Acids Res (2003) 1.38

Degrading chloroplast mRNA: the role of polyadenylation. Trends Biochem Sci (1999) 1.38

Differential sensitivities of portions of the mRNA for ribosomal protein S20 to 3'-exonucleases dependent on oligoadenylation and RNA secondary structure. J Biol Chem (1996) 1.35

Isolation and characterization of polyadenylate-containing RNA from Bacillus brevis. Biochemistry (1978) 1.33

The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells. Nucleic Acids Res (2006) 1.33

Detection of high levels of polyadenylate-containing RNA in bacteria by the use of a single-step RNA isolation procedure. Nucleic Acids Res (1981) 1.33

Opposing effects of polyadenylation on the stability of edited and unedited mitochondrial RNAs in Trypanosoma brucei. Mol Cell Biol (2005) 1.32

Stabilization of circular rpsT mRNA demonstrates the 5'-end dependence of RNase E action in vivo. J Biol Chem (2000) 1.32

Poly(A) polymerase I of Escherichia coli: characterization of the catalytic domain, an RNA binding site and regions for the interaction with proteins involved in mRNA degradation. Mol Microbiol (1999) 1.31

Two exoribonucleases act sequentially to process mature 3'-ends of atp9 mRNAs in Arabidopsis mitochondria. J Biol Chem (2004) 1.31

PcnB is required for the rapid degradation of RNAI, the antisense RNA that controls the copy number of ColE1-related plasmids. Mol Microbiol (1993) 1.30

The role of RNA structure in determining RNase E-dependent cleavage sites in the mRNA for ribosomal protein S20 in vitro. J Mol Biol (1993) 1.28

Stabilization of the 3' one-third of Escherichia coli ribosomal protein S20 mRNA in mutants lacking polynucleotide phosphorylase. J Bacteriol (1989) 1.27

Polyadenylation occurs at multiple sites in maize mitochondrial cox2 mRNA and is independent of editing status. Plant Cell (1999) 1.26

Poly(A)- and poly(U)-specific RNA 3' tail shortening by E. coli ribonuclease E. Nature (1998) 1.26

Presence of polyriboadenylate sequences in pulse-labeled RNA of Escherichia coli. Proc Natl Acad Sci U S A (1975) 1.26

Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation. RNA (2008) 1.25

RNA polyadenylation in Archaea: not observed in Haloferax while the exosome polynucleotidylates RNA in Sulfolobus. EMBO Rep (2005) 1.25

Human mitochondrial RNA turnover caught in flagranti: involvement of hSuv3p helicase in RNA surveillance. Nucleic Acids Res (2009) 1.25

PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins. RNA (2008) 1.24

Transcript lifetime is balanced between stabilizing stem-loop structures and degradation-promoting polyadenylation in plant mitochondria. Mol Cell Biol (2001) 1.24

RNase Z in Escherichia coli plays a significant role in mRNA decay. Mol Microbiol (2006) 1.22

AtmtPNPase is required for multiple aspects of the 18S rRNA metabolism in Arabidopsis thaliana mitochondria. Nucleic Acids Res (2004) 1.22

Multiple forms of poly(A) polymerases in human cells. Proc Natl Acad Sci U S A (1994) 1.21

Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. Genes Dev (2006) 2.59

The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. Mol Microbiol (2004) 2.32

Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli. Genes Dev (2002) 2.07

Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay. Mol Microbiol (2003) 1.44

The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells. Nucleic Acids Res (2006) 1.33

Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays. Nucleic Acids Res (2010) 1.32

RNase Z in Escherichia coli plays a significant role in mRNA decay. Mol Microbiol (2006) 1.22

RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E. Mol Microbiol (2003) 1.07

RNAsnap™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria. Nucleic Acids Res (2012) 1.05

De novo computational prediction of non-coding RNA genes in prokaryotic genomes. Bioinformatics (2009) 1.04

Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli. Nucleic Acids Res (2007) 1.01

Analysis of RNA decay, processing, and polyadenylation in Escherichia coli and other prokaryotes. Methods Enzymol (2008) 1.00

Ribonuclease P processes polycistronic tRNA transcripts in Escherichia coli independent of ribonuclease E. Nucleic Acids Res (2007) 0.99

RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters. Mol Microbiol (2002) 0.96

Processing of the Escherichia coli leuX tRNA transcript, encoding tRNA(Leu5), requires either the 3'-->5' exoribonuclease polynucleotide phosphorylase or RNase P to remove the Rho-independent transcription terminator. Nucleic Acids Res (2009) 0.93

Polyadenylation of Escherichia coli transcripts plays an integral role in regulating intracellular levels of polynucleotide phosphorylase and RNase E. Mol Microbiol (2002) 0.91

Polyadenylation helps regulate functional tRNA levels in Escherichia coli. Nucleic Acids Res (2012) 0.87

Intragenic suppressors of temperature-sensitive rne mutations lead to the dissociation of RNase E activity on mRNA and tRNA substrates in Escherichia coli. Nucleic Acids Res (2008) 0.87

Single amino acid changes in the predicted RNase H domain of Escherichia coli RNase G lead to complementation of RNase E deletion mutants. RNA (2010) 0.87

The response regulator SprE (RssB) modulates polyadenylation and mRNA stability in Escherichia coli. J Bacteriol (2009) 0.86

Deregulation of poly(A) polymerase I in Escherichia coli inhibits protein synthesis and leads to cell death. Nucleic Acids Res (2012) 0.82

In vivo analysis of polyadenylation in prokaryotes. Methods Mol Biol (2014) 0.78

Messenger RNA Decay. Ecosal Plus (2007) 0.75