Published in Mol Microbiol on November 01, 2004
How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria. Microbiol Mol Biol Rev (2006) 6.39
Hfq and its constellation of RNA. Nat Rev Microbiol (2011) 4.94
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SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol Microbiol (2006) 3.07
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A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev (2007) 2.44
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Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA. EMBO J (2010) 1.85
Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli. Genes Dev (2005) 1.82
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The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus. PLoS Genet (2008) 1.74
The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior. J Bacteriol (2008) 1.68
SigmaE regulates and is regulated by a small RNA in Escherichia coli. J Bacteriol (2007) 1.68
Regulation of glycogen metabolism in yeast and bacteria. FEMS Microbiol Rev (2010) 1.64
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The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator. Nucleic Acids Res (2008) 1.63
A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system. Mol Microbiol (2009) 1.52
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Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell (2013) 1.39
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Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets. Mol Microbiol (2012) 1.32
Role of polynucleotide phosphorylase in sRNA function in Escherichia coli. RNA (2011) 1.30
The novel transcription factor SgrR coordinates the response to glucose-phosphate stress. J Bacteriol (2007) 1.30
RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA. Proc Natl Acad Sci U S A (2008) 1.28
RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA. Mol Microbiol (2007) 1.26
The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes. Nucleic Acids Res (2011) 1.23
Small proteins can no longer be ignored. Annu Rev Biochem (2014) 1.21
Media ion composition controls regulatory and virulence response of Salmonella in spaceflight. PLoS One (2008) 1.19
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Novel members of the Cra regulon involved in carbon metabolism in Escherichia coli. J Bacteriol (2010) 1.19
Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence. Nucleic Acids Res (2009) 1.17
Characterization of homologs of the small RNA SgrS reveals diversity in function. Nucleic Acids Res (2009) 1.17
Mobile genetic element SCCmec-encoded psm-mec RNA suppresses translation of agrA and attenuates MRSA virulence. PLoS Pathog (2013) 1.16
Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli. BMC Genomics (2011) 1.16
Messenger RNA Turnover Processes in Escherichia coli, Bacillus subtilis, and Emerging Studies in Staphylococcus aureus. Int J Microbiol (2009) 1.15
A broadening world of bacterial small RNAs. Curr Opin Microbiol (2009) 1.15
Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays. BMC Genomics (2010) 1.12
Dual-function RNA regulators in bacteria. Biochimie (2011) 1.12
Quantifying the sequence-function relation in gene silencing by bacterial small RNAs. Proc Natl Acad Sci U S A (2011) 1.11
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Metabolic Regulation of a Bacterial Cell System with Emphasis on Escherichia coli Metabolism. ISRN Biochem (2013) 1.07
In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements. Nucleic Acids Res (2011) 1.07
Target activation by regulatory RNAs in bacteria. FEMS Microbiol Rev (2015) 1.07
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sRNAs and the virulence of Salmonella enterica serovar Typhimurium. RNA Biol (2012) 1.04
The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair. Proc Natl Acad Sci U S A (2012) 1.04
The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA. Mol Microbiol (2010) 1.02
sRNAscanner: a computational tool for intergenic small RNA detection in bacterial genomes. PLoS One (2010) 1.02
Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria. Nucleic Acids Res (2011) 1.00
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Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host-pathogen transcriptomes. Proc Natl Acad Sci U S A (2017) 0.98
Metabolic engineering in the -omics era: elucidating and modulating regulatory networks. Microbiol Mol Biol Rev (2005) 0.97
Hfq variant with altered RNA binding functions. Nucleic Acids Res (2006) 0.96
Cellular electron microscopy imaging reveals the localization of the Hfq protein close to the bacterial membrane. PLoS One (2009) 0.96
Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA. Proc Natl Acad Sci U S A (2012) 0.94
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Evidence in vivo that the DEAD-box RNA helicase RhlB facilitates the degradation of ribosome-free mRNA by RNase E. Proc Natl Acad Sci U S A (2005) 0.93
Identification of a chitin-induced small RNA that regulates translation of the tfoX gene, encoding a positive regulator of natural competence in Vibrio cholerae. J Bacteriol (2011) 0.93
A variable homopolymeric G-repeat defines small RNA-mediated posttranscriptional regulation of a chemotaxis receptor in Helicobacter pylori. Proc Natl Acad Sci U S A (2014) 0.92
Regulation and function of Escherichia coli sugar efflux transporter A (SetA) during glucose-phosphate stress. J Bacteriol (2010) 0.92
The Vibrio cholerae mannitol transporter is regulated posttranscriptionally by the MtlS small regulatory RNA. J Bacteriol (2011) 0.90
Depletion of glycolytic intermediates plays a key role in glucose-phosphate stress in Escherichia coli. J Bacteriol (2013) 0.88
Co-expression of RNA-protein complexes in Escherichia coli and applications to RNA biology. Nucleic Acids Res (2013) 0.88
Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coli. J Bacteriol (2013) 0.87
Genome-wide transcriptional response of an avian pathogenic Escherichia coli (APEC) pst mutant. BMC Genomics (2008) 0.87
Global transcriptome analysis reveals small RNAs affecting Neisseria meningitidis bacteremia. PLoS One (2015) 0.87
Identification of small RNAs in Mycobacterium smegmatis using heterologous Hfq. RNA (2012) 0.86
Essential requirements for robust signaling in Hfq dependent small RNA networks. PLoS Comput Biol (2011) 0.86
Clostridium difficile Hfq can replace Escherichia coli Hfq for most of its function. RNA (2014) 0.85
Glucose uptake regulation in E. coli by the small RNA SgrS: comparative analysis of E. coli K-12 (JM109 and MG1655) and E. coli B (BL21). Microb Cell Fact (2010) 0.84
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Induction of the Pho regulon suppresses the growth defect of an Escherichia coli sgrS mutant, connecting phosphate metabolism to the glucose-phosphate stress response. J Bacteriol (2012) 0.83
Ex uno plures: clonal reinforcement drives evolution of a simple microbial community. PLoS Genet (2014) 0.83
Deciphering the interplay between two independent functions of the small RNA regulator SgrS in Salmonella. J Bacteriol (2013) 0.83
RNA localization in bacteria. Curr Opin Microbiol (2011) 0.83
Identification of sRNAs expressed by the human pathogen Neisseria gonorrhoeae under disparate growth conditions. Front Microbiol (2014) 0.82
Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris. BMC Genomics (2010) 0.82
Identification of novel sRNAs involved in biofilm formation, motility, and fimbriae formation in Escherichia coli. Sci Rep (2015) 0.82
New developments in post-transcriptional regulation of operons by small RNAs. RNA Biol (2013) 0.81
The small RNA SgrS: roles in metabolism and pathogenesis of enteric bacteria. Front Cell Infect Microbiol (2014) 0.81
Phosphotransferase system-mediated glucose uptake is repressed in phosphoglucoisomerase-deficient Corynebacterium glutamicum strains. Appl Environ Microbiol (2013) 0.81
Identifying and characterizing Hfq-RNA interactions. Methods (2013) 0.81
Reducing acetate excretion from E. coli K-12 by over-expressing the small RNA SgrS. N Biotechnol (2011) 0.80
Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress. Mol Microbiol (2015) 0.80
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci U S A (2002) 7.99
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev (2003) 7.33
Global analysis of small RNA and mRNA targets of Hfq. Mol Microbiol (2003) 4.98
Effect of RyhB small RNA on global iron use in Escherichia coli. J Bacteriol (2005) 4.01
The Rcs phosphorelay: a complex signal transduction system. Annu Rev Microbiol (2005) 3.51
Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis. Proc Natl Acad Sci U S A (2004) 3.31
The RpoS-mediated general stress response in Escherichia coli. Annu Rev Microbiol (2011) 3.13
Target prediction for small, noncoding RNAs in bacteria. Nucleic Acids Res (2006) 2.90
Bacterial small RNA regulators. Crit Rev Biochem Mol Biol (2005) 2.68
Regulation and mode of action of the second small RNA activator of RpoS translation, RprA. Mol Microbiol (2002) 2.61
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs. Mol Microbiol (2006) 2.41
Overproduction of the Lon protease triggers inhibition of translation in Escherichia coli: involvement of the yefM-yoeB toxin-antitoxin system. Mol Microbiol (2004) 2.29
Positive regulation by small RNAs and the role of Hfq. Proc Natl Acad Sci U S A (2010) 2.23
A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides. Mol Microbiol (2009) 2.03
Regulatory roles for small RNAs in bacteria. Curr Opin Microbiol (2003) 2.03
Modulating the outer membrane with small RNAs. Genes Dev (2006) 2.00
Modulating RssB activity: IraP, a novel regulator of sigma(S) stability in Escherichia coli. Genes Dev (2006) 1.86
Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA. EMBO J (2010) 1.85
The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior. J Bacteriol (2008) 1.68
SigmaE regulates and is regulated by a small RNA in Escherichia coli. J Bacteriol (2007) 1.68
An antibody-based microarray assay for small RNA detection. Nucleic Acids Res (2006) 1.65
The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator. Nucleic Acids Res (2008) 1.63
Bacterial small RNA-based negative regulation: Hfq and its accomplices. J Biol Chem (2013) 1.63
Multiple pathways for regulation of sigmaS (RpoS) stability in Escherichia coli via the action of multiple anti-adaptors. Mol Microbiol (2008) 1.59
Competition among Hfq-binding small RNAs in Escherichia coli. Mol Microbiol (2011) 1.54
A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system. Mol Microbiol (2009) 1.52
Role of RcsF in signaling to the Rcs phosphorelay pathway in Escherichia coli. J Bacteriol (2005) 1.47
The PhoP/PhoQ two-component system stabilizes the alternative sigma factor RpoS in Salmonella enterica. Proc Natl Acad Sci U S A (2006) 1.44
ppGpp regulation of RpoS degradation via anti-adaptor protein IraP. Proc Natl Acad Sci U S A (2007) 1.31
Role of polynucleotide phosphorylase in sRNA function in Escherichia coli. RNA (2011) 1.30
The novel transcription factor SgrR coordinates the response to glucose-phosphate stress. J Bacteriol (2007) 1.30
A complex network of small non-coding RNAs regulate motility in Escherichia coli. Mol Microbiol (2012) 1.27
Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets. J Mol Biol (2013) 1.23
MicA sRNA links the PhoP regulon to cell envelope stress. Mol Microbiol (2010) 1.22
Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: pairing increases translation and protects rpoS mRNA from degradation. J Bacteriol (2010) 1.14
Roles of adaptor proteins in regulation of bacterial proteolysis. Curr Opin Microbiol (2013) 1.06
Modes of regulation of RpoS by H-NS. J Bacteriol (2006) 1.03
Anti-adaptors provide multiple modes for regulation of the RssB adaptor protein. Genes Dev (2013) 0.99
Translational regulation of the Escherichia coli stress factor RpoS: a role for SsrA and Lon. J Bacteriol (2007) 0.99
Analysis of the Escherichia coli Alp phenotype: heat shock induction in ssrA mutants. J Bacteriol (2005) 0.93
Noncoding RNAs at the membrane. Nat Struct Mol Biol (2005) 0.89
Regulating the regulator: an RNA decoy acts as an OFF switch for the regulation of an sRNA. Genes Dev (2009) 0.88
Complex transcriptional and post-transcriptional regulation of an enzyme for lipopolysaccharide modification. Mol Microbiol (2013) 0.86
Genetic dissection of signaling through the Rcs phosphorelay. Methods Enzymol (2007) 0.85
The MiaA tRNA modification enzyme is necessary for robust RpoS expression in Escherichia coli. J Bacteriol (2013) 0.80
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RNase E finds some sRNAs stimulating. Mol Cell (2012) 0.75
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