Published in Proc Natl Acad Sci U S A on November 27, 2007
Genome regulation by long noncoding RNAs. Annu Rev Biochem (2012) 11.70
Regulatory RNAs in bacteria. Cell (2009) 9.57
lincRNAs: genomics, evolution, and mechanisms. Cell (2013) 6.50
Hfq and its constellation of RNA. Nat Rev Microbiol (2011) 4.94
Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol (2011) 3.75
Differentiating protein-coding and noncoding RNA: challenges and ambiguities. PLoS Comput Biol (2008) 3.66
Peptidomic discovery of short open reading frame-encoded peptides in human cells. Nat Chem Biol (2012) 2.95
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A (2012) 2.39
Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing. Nucleic Acids Res (2009) 2.25
Base pairing small RNAs and their roles in global regulatory networks. FEMS Microbiol Rev (2010) 2.13
An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. EMBO J (2012) 2.10
Small membrane proteins found by comparative genomics and ribosome binding site models. Mol Microbiol (2008) 1.84
The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus. PLoS Genet (2008) 1.74
The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins. Proc Natl Acad Sci U S A (2008) 1.74
Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability. Proc Natl Acad Sci U S A (2009) 1.66
PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action. Proc Natl Acad Sci U S A (2011) 1.64
Evolution of transcriptional regulatory circuits in bacteria. Cell (2009) 1.48
Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell (2013) 1.39
Bacterial transcriptomics: what is beyond the RNA horiz-ome? Nat Rev Microbiol (2011) 1.39
An expanding universe of small proteins. Curr Opin Microbiol (2011) 1.35
Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies. J Bacteriol (2010) 1.34
RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA. Proc Natl Acad Sci U S A (2008) 1.28
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics (2010) 1.24
The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes. Nucleic Acids Res (2011) 1.23
Small proteins can no longer be ignored. Annu Rev Biochem (2014) 1.21
Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions. J Bacteriol (2011) 1.19
The Escherichia coli MntR miniregulon includes genes encoding a small protein and an efflux pump required for manganese homeostasis. J Bacteriol (2011) 1.18
Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence. Nucleic Acids Res (2009) 1.17
Characterization of homologs of the small RNA SgrS reveals diversity in function. Nucleic Acids Res (2009) 1.17
Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli. BMC Genomics (2011) 1.16
A broadening world of bacterial small RNAs. Curr Opin Microbiol (2009) 1.15
Dual function of the McaS small RNA in controlling biofilm formation. Genes Dev (2013) 1.13
Dual-function RNA regulators in bacteria. Biochimie (2011) 1.12
RNA-mediated regulation in pathogenic bacteria. Cold Spring Harb Perspect Med (2013) 1.11
Molecular call and response: the physiology of bacterial small RNAs. Biochim Biophys Acta (2011) 1.10
Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011. BMC Genomics (2008) 1.09
Small RNA functions in carbon metabolism and virulence of enteric pathogens. Front Cell Infect Microbiol (2014) 1.08
Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens. RNA Biol (2012) 1.08
A simple and efficient method to search for selected primary transcripts: non-coding and antisense RNAs in the human pathogen Enterococcus faecalis. Nucleic Acids Res (2011) 1.07
Metabolic Regulation of a Bacterial Cell System with Emphasis on Escherichia coli Metabolism. ISRN Biochem (2013) 1.07
Target activation by regulatory RNAs in bacteria. FEMS Microbiol Rev (2015) 1.07
The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair. Proc Natl Acad Sci U S A (2012) 1.04
The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA. Mol Microbiol (2010) 1.02
Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host-pathogen transcriptomes. Proc Natl Acad Sci U S A (2017) 0.98
Discovery and characterization of smORF-encoded bioactive polypeptides. Nat Chem Biol (2015) 0.98
The Escherichia coli CydX protein is a member of the CydAB cytochrome bd oxidase complex and is required for cytochrome bd oxidase activity. J Bacteriol (2013) 0.97
RNA-mediated reciprocal regulation between two bacterial operons is RNase III dependent. MBio (2011) 0.95
Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA. Proc Natl Acad Sci U S A (2012) 0.94
Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells. PLoS One (2012) 0.93
Regulation and function of Escherichia coli sugar efflux transporter A (SetA) during glucose-phosphate stress. J Bacteriol (2010) 0.92
Investigating endogenous peptides and peptidases using peptidomics. Biochemistry (2011) 0.91
Comparative profiling of Pseudomonas aeruginosa strains reveals differential expression of novel unique and conserved small RNAs. PLoS One (2012) 0.90
Whole-genome mapping of 5' RNA ends in bacteria by tagged sequencing: a comprehensive view in Enterococcus faecalis. RNA (2015) 0.89
Depletion of glycolytic intermediates plays a key role in glucose-phosphate stress in Escherichia coli. J Bacteriol (2013) 0.88
Post-transcriptional regulation of gene expression in Yersinia species. Front Cell Infect Microbiol (2012) 0.88
Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coli. J Bacteriol (2013) 0.87
Regulated capture by exosomes of mRNAs for cytoplasmic tRNA synthetases. J Biol Chem (2013) 0.87
Coregulation of host-adapted metabolism and virulence by pathogenic yersiniae. Front Cell Infect Microbiol (2014) 0.85
Clostridium difficile Hfq can replace Escherichia coli Hfq for most of its function. RNA (2014) 0.85
A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens. PLoS One (2013) 0.85
Glucose uptake regulation in E. coli by the small RNA SgrS: comparative analysis of E. coli K-12 (JM109 and MG1655) and E. coli B (BL21). Microb Cell Fact (2010) 0.84
Small Regulatory RNA and Legionella pneumophila. Front Microbiol (2011) 0.84
Small RNAs making a small protein. Proc Natl Acad Sci U S A (2007) 0.84
SR1--a small RNA with two remarkably conserved functions. Nucleic Acids Res (2012) 0.83
Induction of the Pho regulon suppresses the growth defect of an Escherichia coli sgrS mutant, connecting phosphate metabolism to the glucose-phosphate stress response. J Bacteriol (2012) 0.83
Long non-coding RNAs in haematological malignancies. Int J Mol Sci (2013) 0.83
Deciphering the interplay between two independent functions of the small RNA regulator SgrS in Salmonella. J Bacteriol (2013) 0.83
Phosphoenolpyruvate Phosphotransferase System Components Modulate Gene Transcription and Virulence of Borrelia burgdorferi. Infect Immun (2015) 0.81
Genome-wide analysis of the regulatory function mediated by the small regulatory psm-mec RNA of methicillin-resistant Staphylococcus aureus. Int J Med Microbiol (2014) 0.81
The small RNA SgrS: roles in metabolism and pathogenesis of enteric bacteria. Front Cell Infect Microbiol (2014) 0.81
Phosphotransferase system-mediated glucose uptake is repressed in phosphoglucoisomerase-deficient Corynebacterium glutamicum strains. Appl Environ Microbiol (2013) 0.81
Identifying and characterizing Hfq-RNA interactions. Methods (2013) 0.81
Identification and characterization of sORF-encoded polypeptides. Crit Rev Biochem Mol Biol (2015) 0.80
Omics strategies for revealing Yersinia pestis virulence. Front Cell Infect Microbiol (2012) 0.80
Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress. Mol Microbiol (2015) 0.80
Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides. Anal Chem (2016) 0.77
Experimental approaches to identify small RNAs and their diverse roles in bacteria - what we have learnt in one decade of MicA research. Microbiologyopen (2015) 0.77
Characterizing the Syphilis-Causing Treponema pallidum ssp. pallidum Proteome Using Complementary Mass Spectrometry. PLoS Negl Trop Dis (2016) 0.77
Incredible RNA: Dual Functions of Coding and Noncoding. Mol Cells (2016) 0.76
Dual-function sRNA encoded peptide SR1P modulates moonlighting activity of B. subtilis GapA. RNA Biol (2016) 0.76
What is an RNA? A top layer for RNA classification. RNA Biol (2016) 0.76
cncRNAs: Bi-functional RNAs with protein coding and non-coding functions. Semin Cell Dev Biol (2015) 0.76
Transcriptome landscape of Lactococcus lactis reveals many novel RNAs including a small regulatory RNA involved in carbon uptake and metabolism. RNA Biol (2016) 0.76
Nucleoid and cytoplasmic localization of small RNAs in Escherichia coli. Nucleic Acids Res (2017) 0.75
Characteristics of Pos19 - A Small Coding RNA in the Oxidative Stress Response of Rhodobacter sphaeroides. PLoS One (2016) 0.75
Induction of the Sugar-Phosphate Stress Response Allows Saccharomyces cerevisiae 2-Methyl-4-Amino-5-Hydroxymethylpyrimidine Phosphate Synthase To Function in Salmonella enterica. J Bacteriol (2015) 0.75
Yersinia pestis and Yersinia pseudotuberculosis infection: a regulatory RNA perspective. Front Microbiol (2015) 0.75
Characterization of the Interaction Between the Small Regulatory Peptide SgrT and the EIICBGlc of the Glucose-Phosphotransferase System of E. coli K-12. Metabolites (2012) 0.75
Local structural alignment of RNA with affine gap model. BMC Proc (2011) 0.75
Pleiotropic Regulation of Virulence Genes in Streptococcus mutans by the Conserved Small Protein SprV. J Bacteriol (2017) 0.75
Early Transcriptome Response of Lactococcus lactis to Environmental Stresses Reveals Differentially Expressed Small Regulatory RNAs and tRNAs. Front Microbiol (2017) 0.75
Evidence for two functional gal promoters in intact Escherichia coli cells. J Biol Chem (1981) 17.42
An efficient recombination system for chromosome engineering in Escherichia coli. Proc Natl Acad Sci U S A (2000) 17.30
L-Arabinose-sensitive, L-ribulose 5-phosphate 4-epimerase-deficient mutants of Escherichia coli. J Bacteriol (1962) 14.86
How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria. Microbiol Mol Biol Rev (2006) 6.39
Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. Mol Cell (2002) 5.26
Global analysis of small RNA and mRNA targets of Hfq. Mol Microbiol (2003) 4.98
HEREDITARY DEFECTS IN GALACTOSE METABOLISM IN ESCHERICHIA COLI MUTANTS, II. GALACTOSE-INDUCED SENSITIVITY. Proc Natl Acad Sci U S A (1959) 4.42
Effect of RyhB small RNA on global iron use in Escherichia coli. J Bacteriol (2005) 4.01
Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII. EMBO J (1995) 3.64
Hfq is necessary for regulation by the untranslated RNA DsrA. J Bacteriol (2001) 3.54
Regulation of RpoS by a novel small RNA: the characterization of RprA. Mol Microbiol (2001) 3.32
Construction of targeted single copy lac fusions using lambda Red and FLP-mediated site-specific recombination in bacteria. Gene (2002) 3.20
The E. coli signal recognition particle is required for the insertion of a subset of inner membrane proteins. Cell (1997) 3.09
Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system. Mol Microbiol (2004) 3.07
Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression. EMBO J (2005) 2.95
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism. Genes Dev (2007) 2.86
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq. Mol Microbiol (2006) 2.69
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs. Mol Microbiol (2006) 2.41
Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction. Proc Natl Acad Sci U S A (2006) 2.08
Regulatory roles for small RNAs in bacteria. Curr Opin Microbiol (2003) 2.03
Expression of the glucose transporter gene, ptsG, is regulated at the mRNA degradation step in response to glycolytic flux in Escherichia coli. EMBO J (2001) 1.89
Accumulation of glucose 6-phosphate or fructose 6-phosphate is responsible for destabilization of glucose transporter mRNA in Escherichia coli. J Biol Chem (2003) 1.86
No detectable effect of RNA-binding protein Hfq absence in Staphylococcus aureus. BMC Microbiol (2007) 1.79
Two mechanisms for growth inhibition by elevated transport of sugar phosphates in Escherichia coli. J Gen Microbiol (1992) 1.48
The novel transcription factor SgrR coordinates the response to glucose-phosphate stress. J Bacteriol (2007) 1.30
Effect of RyhB small RNA on global iron use in Escherichia coli. J Bacteriol (2005) 4.01
Bacterial small RNA regulators. Crit Rev Biochem Mol Biol (2005) 2.68
Computational analysis of bacterial RNA-Seq data. Nucleic Acids Res (2013) 2.50
Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell (2013) 1.39
The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes. Nucleic Acids Res (2011) 1.23
Characterization of homologs of the small RNA SgrS reveals diversity in function. Nucleic Acids Res (2009) 1.17
Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence. Nucleic Acids Res (2009) 1.17
Molecular call and response: the physiology of bacterial small RNAs. Biochim Biophys Acta (2011) 1.10
Heme transport contributes to in vivo fitness of Bordetella pertussis during primary infection in mice. Infect Immun (2006) 1.05
Regulation of bacterial metabolism by small RNAs using diverse mechanisms. Annu Rev Genet (2013) 1.00
Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA. Proc Natl Acad Sci U S A (2012) 0.94
Regulation and function of Escherichia coli sugar efflux transporter A (SetA) during glucose-phosphate stress. J Bacteriol (2010) 0.92
Noncoding RNAs at the membrane. Nat Struct Mol Biol (2005) 0.89
Depletion of glycolytic intermediates plays a key role in glucose-phosphate stress in Escherichia coli. J Bacteriol (2013) 0.88
Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coli. J Bacteriol (2013) 0.87
Deciphering the interplay between two independent functions of the small RNA regulator SgrS in Salmonella. J Bacteriol (2013) 0.83
Induction of the Pho regulon suppresses the growth defect of an Escherichia coli sgrS mutant, connecting phosphate metabolism to the glucose-phosphate stress response. J Bacteriol (2012) 0.83
Small RNAs Regulate Primary and Secondary Metabolism in Gram-negative Bacteria. Microbiol Spectr (2015) 0.83
New developments in post-transcriptional regulation of operons by small RNAs. RNA Biol (2013) 0.81