Published in Nucleic Acids Res on December 14, 2004
Cooperative activity of BRG1 and Z-DNA formation in chromatin remodeling. Mol Cell Biol (2006) 1.32
Biological function of the vaccinia virus Z-DNA-binding protein E3L: gene transactivation and antiapoptotic activity in HeLa cells. Proc Natl Acad Sci U S A (2005) 1.25
Microhomology-mediated mechanisms underlie non-recurrent disease-causing microdeletions of the FOXL2 gene or its regulatory domain. PLoS Genet (2013) 1.16
Effect of sequence-directed nucleosome disruption on cell-type-specific repression by alpha2/Mcm1 in the yeast genome. Eukaryot Cell (2006) 1.04
Human genomic Z-DNA segments probed by the Z alpha domain of ADAR1. Nucleic Acids Res (2009) 1.03
Identification of sequence motifs at the breakpoint junctions in three t(1;9)(p36.3;q34) and delineation of mechanisms involved in generating balanced translocations. Hum Genet (2006) 0.99
Phylogenomic analysis of the emergence of GC-rich transcription elements. Proc Natl Acad Sci U S A (2007) 0.97
Reaction path ensemble of the B-Z-DNA transition: a comprehensive atomistic study. Nucleic Acids Res (2012) 0.95
Bullied no more: when and how DNA shoves proteins around. Q Rev Biophys (2012) 0.92
A Z-DNA sequence reduces slipped-strand structure formation in the myotonic dystrophy type 2 (CCTG) x (CAGG) repeat. Proc Natl Acad Sci U S A (2009) 0.91
The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli. Nucleic Acids Res (2013) 0.90
The structural diversity of artificial genetic polymers. Nucleic Acids Res (2015) 0.89
Theoretical analysis of competing conformational transitions in superhelical DNA. PLoS Comput Biol (2012) 0.89
The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation. Biophys J (2006) 0.82
Ion distributions around left- and right-handed DNA and RNA duplexes: a comparative study. Nucleic Acids Res (2014) 0.81
3,3'-diethylthiatricarbocyanine iodide: a highly sensitive chiroptical reporter of DNA helicity and sequence. Int J Mol Sci (2011) 0.77
Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation. Nucleic Acids Res (2014) 0.77
APTE: identification of indirect read-out A-DNA promoter elements in genomes. BMC Bioinformatics (2014) 0.75
Initial sequencing and analysis of the human genome. Nature (2001) 212.86
The sequence of the human genome. Science (2001) 101.55
The complete genome sequence of Escherichia coli K-12. Science (1997) 84.27
Molecular structure of a left-handed double helical DNA fragment at atomic resolution. Nature (1979) 18.01
Supercoiling of the DNA template during transcription. Proc Natl Acad Sci U S A (1987) 14.25
Regulation of CSF1 promoter by the SWI/SNF-like BAF complex. Cell (2001) 3.10
Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA. Science (1999) 2.54
Stabilization of Z DNA in vivo by localized supercoiling. Science (1989) 2.45
Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes. J Biol Chem (1992) 2.12
A computer aided thermodynamic approach for predicting the formation of Z-DNA in naturally occurring sequences. EMBO J (1986) 1.76
Experimental analysis and computer prediction of CTF/NFI transcription factor DNA binding sites. J Mol Biol (2000) 1.49
Effect of the B--Z transition in poly(dG-m5dC) . poly(dG-m5dC) on nucleosome formation. Proc Natl Acad Sci U S A (1982) 1.46
Left-handed Z-DNA: structure and function. Genetica (1999) 1.43
Z-DNA-binding proteins can act as potent effectors of gene expression in vivo. Proc Natl Acad Sci U S A (2002) 1.26
Effect of Z-DNA on nucleosome placement. J Mol Biol (1987) 1.24
The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences. Nucleic Acids Res (1998) 1.21
The zab domain of the human RNA editing enzyme ADAR1 recognizes Z-DNA when surrounded by B-DNA. J Biol Chem (2000) 1.11
Inhibition of DNA supercoiling-dependent transcriptional activation by a distant B-DNA to Z-DNA transition. J Biol Chem (1999) 1.00
Activation and repression of transcription initiation by a distant DNA structural transition. Mol Microbiol (2001) 0.92
Stochastic distribution of a short region of Z-DNA within a long repeated sequence in negatively supercoiled plasmids. J Biol Chem (1988) 0.89
Left-handed Z-DNA and in vivo supercoil density in the Escherichia coli chromosome. Proc Natl Acad Sci U S A (1994) 0.86
Double-stranded RNA adenosine deaminase binds Z-DNA in vitro. Nucleic Acids Symp Ser (1995) 0.86
Z-DNA: still searching for a function. Science (1985) 0.84
A reexamination of the reported B----Z DNA transition in nucleosomes reconstituted with poly(dG-m5dC).poly(dG-m5dC). Biochemistry (1987) 0.83
Supercoiled induced transition to the Z-DNA conformation affects the ability of a d(CG/GC)12 sequence to be organized into nucleosome-cores. Nucleic Acids Res (1987) 0.83
Transcriptional regulation of mouse MARCKS promoter in immortalized hippocampal cells. Biochem Biophys Res Commun (2002) 0.79
Halogen bonds in biological molecules. Proc Natl Acad Sci U S A (2004) 7.19
How sequence defines structure: a crystallographic map of DNA structure and conformation. Proc Natl Acad Sci U S A (2005) 1.61
Halogen bonds as orthogonal molecular interactions to hydrogen bonds. Nat Chem (2009) 1.56
Directing macromolecular conformation through halogen bonds. Proc Natl Acad Sci U S A (2007) 1.33
Effect of sequence on the conformation of DNA holliday junctions. Biochemistry (2003) 1.29
Caution! DNA crossing: crystal structures of Holliday junctions. J Biol Chem (2003) 1.20
Definitions and analysis of DNA Holliday junction geometry. Nucleic Acids Res (2004) 1.17
Mass spectrometric approaches using electrospray ionization charge states and hydrogen-deuterium exchange for determining protein structures and their conformational changes. Mol Cell Proteomics (2003) 1.14
The role of halogen bonding in inhibitor recognition and binding by protein kinases. Curr Top Med Chem (2007) 1.07
Halogen bonding (X-bonding): a biological perspective. Protein Sci (2012) 1.05
Phylogenomic analysis of the emergence of GC-rich transcription elements. Proc Natl Acad Sci U S A (2007) 0.97
The effect of cytosine methylation on the structure and geometry of the Holliday junction: the structure of d(CCGGTACm5CGG) at 1.5 A resolution. J Biol Chem (2002) 0.92
Topolins and hydroxylated thidiazuron derivatives are substrates of cytokinin O-glucosyltransferase with position specificity related to receptor recognition. Plant Physiol (2005) 0.91
Solution formation of Holliday junctions in inverted-repeat DNA sequences. Biochemistry (2006) 0.85
A rare nucleotide base tautomer in the structure of an asymmetric DNA junction. Biochemistry (2009) 0.85
Methicillin-resistant Staphylococcus aureus, Samoa, 2007-2008. Emerg Infect Dis (2011) 0.82
Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions. Biochemistry (2013) 0.80
Phosphoinositide binding regulates alpha-actinin CH2 domain structure: analysis by hydrogen/deuterium exchange mass spectrometry. Protein Sci (2007) 0.78
Force Field Model of Periodic Trends in Biomolecular Halogen Bonds. J Phys Chem B (2014) 0.77
Influence of minor groove substituents on the structure of DNA Holliday junctions. Biochemistry (2004) 0.76
Methods to study nucleic acid structure. Methods (2009) 0.75
Intrinsic fluorescence of B and Z forms of poly d(G-m5C).poly d(G-m5C), a synthetic double-stranded DNA: spectra and lifetimes by the maximum entropy method. Photochem Photobiol Sci (2007) 0.75
Evaluation of potential variables contributing to the development and duration of plantar lesions in a population of aquarium-maintained African penguins (Spheniscus demersus). Zoo Biol (2011) 0.75