Published in Bioessays on February 01, 2005
Surprising complexity of the ancestral apoptosis network. Genome Biol (2007) 1.63
StellaBase: the Nematostella vectensis Genomics Database. Nucleic Acids Res (2006) 1.59
Enzymes of the shikimic acid pathway encoded in the genome of a basal metazoan, Nematostella vectensis, have microbial origins. Proc Natl Acad Sci U S A (2008) 1.51
The future of evo-devo: model systems and evolutionary theory. Nat Rev Genet (2009) 1.50
Evolutionary crossroads in developmental biology: Cnidaria. Development (2011) 1.46
CFGP: a web-based, comparative fungal genomics platform. Nucleic Acids Res (2007) 1.39
Novel genes dramatically alter regulatory network topology in amphioxus. Genome Biol (2008) 1.32
Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires. Genome Biol (2011) 1.22
Cell proliferation is necessary for the regeneration of oral structures in the anthozoan cnidarian Nematostella vectensis. BMC Dev Biol (2012) 1.17
Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics. Mol Ecol (2013) 1.16
A genomic view of 500 million years of cnidarian evolution. Trends Genet (2010) 1.15
Conserved and novel gene expression between regeneration and asexual fission in Nematostella vectensis. Dev Genes Evol (2009) 1.14
A framework for the establishment of a cnidarian gene regulatory network for "endomesoderm" specification: the inputs of ß-catenin/TCF signaling. PLoS Genet (2012) 1.12
Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates. BMC Genomics (2006) 1.07
Embryonic development and metamorphosis of the scyphozoan Aurelia. Dev Genes Evol (2008) 1.04
Functional roles of Notch signaling in the cnidarian Nematostella vectensis. Dev Biol (2011) 1.03
Collecting, rearing, spawning and inducing regeneration of the starlet sea anemone, Nematostella vectensis. Nat Protoc (2013) 1.02
Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis. Dev Genes Evol (2006) 1.02
Domain architecture evolution of pattern-recognition receptors. Immunogenetics (2010) 0.99
Gastrulation in the sea anemone Nematostella vectensis occurs by invagination and immigration: an ultrastructural study. Dev Genes Evol (2006) 0.98
Neurotoxin localization to ectodermal gland cells uncovers an alternative mechanism of venom delivery in sea anemones. Proc Biol Sci (2011) 0.98
Gene discovery in the threatened elkhorn coral: 454 sequencing of the Acropora palmata transcriptome. PLoS One (2011) 0.98
Molecular evolution of Cide family proteins: novel domain formation in early vertebrates and the subsequent divergence. BMC Evol Biol (2008) 0.97
The evolutionary origin of the Runx/CBFbeta transcription factors--studies of the most basal metazoans. BMC Evol Biol (2008) 0.97
Analysis of soluble protein contents from the nematocysts of a model sea anemone sheds light on venom evolution. Mar Biotechnol (NY) (2012) 0.93
Environmental sensing and response genes in cnidaria: the chemical defensome in the sea anemone Nematostella vectensis. Cell Biol Toxicol (2008) 0.92
Microinjection of mRNA or morpholinos for reverse genetic analysis in the starlet sea anemone, Nematostella vectensis. Nat Protoc (2013) 0.89
Evolution of the animal apoptosis network. Cold Spring Harb Perspect Biol (2013) 0.89
A coral-on-a-chip microfluidic platform enabling live-imaging microscopy of reef-building corals. Nat Commun (2016) 0.89
Upgrades to StellaBase facilitate medical and genetic studies on the starlet sea anemone, Nematostella vectensis. Nucleic Acids Res (2007) 0.88
Spatial gene expression quantification: a tool for analysis of in situ hybridizations in sea anemone Nematostella vectensis. BMC Res Notes (2012) 0.84
Characterization of circadian behavior in the starlet sea anemone, Nematostella vectensis. PLoS One (2012) 0.84
The rise of the starlet sea anemone Nematostella vectensis as a model system to investigate development and regeneration. Wiley Interdiscip Rev Dev Biol (2016) 0.84
Molecular evolution of SPARC: absence of the acidic module and expression in the endoderm of the starlet sea anemone, Nematostella vectensis. Dev Genes Evol (2009) 0.83
Induction of Gametogenesis in the Cnidarian Endosymbiosis Model Aiptasia sp. Sci Rep (2015) 0.83
Evolution of eumetazoan nervous systems: insights from cnidarians. Philos Trans R Soc Lond B Biol Sci (2015) 0.82
Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian. BMC Genomics (2014) 0.82
A computational approach towards a gene regulatory network for the developing Nematostella vectensis gut. PLoS One (2014) 0.81
Cross-species analysis reveals evolving and conserved features of the nuclear factor κB (NF-κB) proteins. J Biol Chem (2013) 0.80
Old cell, new trick? Cnidocytes as a model for the evolution of novelty. Integr Comp Biol (2014) 0.80
Functional characterisation of a TRPM2 orthologue from the sea anemone Nematostella vectensis in human cells. Sci Rep (2015) 0.79
Isolation of DNA, RNA and protein from the starlet sea anemone Nematostella vectensis. Nat Protoc (2013) 0.79
Activation of the cnidarian oxidative stress response by ultraviolet radiation, polycyclic aromatic hydrocarbons and crude oil. J Exp Biol (2014) 0.79
Ancient connection between NKL genes and the mesoderm? Insights from Tlx expression in a ctenophore. Dev Genes Evol (2007) 0.78
Development and epithelial organisation of muscle cells in the sea anemone Nematostella vectensis. Front Zool (2014) 0.78
Continuous drug release by sea anemone Nematostella vectensis stinging microcapsules. Mar Drugs (2014) 0.78
Do novel genes drive morphological novelty? An investigation of the nematosomes in the sea anemone Nematostella vectensis. BMC Evol Biol (2016) 0.78
A cnidarian homologue of an insect gustatory receptor functions in developmental body patterning. Nat Commun (2015) 0.77
A thrombospondin in the anthozoan Nematostella vectensis is associated with the nervous system and upregulated during regeneration. Biol Open (2012) 0.77
Expansion of tandem repeats in sea anemone Nematostella vectensis proteome: A source for gene novelty? BMC Genomics (2009) 0.77
Characterization of Morphological and Cellular Events Underlying Oral Regeneration in the Sea Anemone, Nematostella vectensis. Int J Mol Sci (2015) 0.77
A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis. BMC Genomics (2016) 0.76
The involvement of arl-5b in the repair of hair cells in sea anemones. J Assoc Res Otolaryngol (2007) 0.76
Aryl hydrocarbon receptor (AHR) in the cnidarian Nematostella vectensis: comparative expression, protein interactions, and ligand binding. Dev Genes Evol (2013) 0.76
A report from the second Nematostella vectensis research conference. Dev Genes Evol (2013) 0.76
Fast neurotransmission related genes are expressed in non nervous endoderm in the sea anemone Nematostella vectensis. PLoS One (2014) 0.75
Hormonal signaling in cnidarians: do we understand the pathways well enough to know whether they are being disrupted? Ecotoxicology (2007) 0.75
Domain analysis of the Nematostella vectensis SNAIL ortholog reveals unique nucleolar localization that depends on the zinc-finger domains. Sci Rep (2015) 0.75
The Hologenome Across Environments and the Implications of a Host-Associated Microbial Repertoire. Front Microbiol (2017) 0.75
Histological study on maturation, fertilization and the state of gonadal region following spawning in the model sea anemone, Nematostella vectensis. PLoS One (2017) 0.75
A bipolar role of the transcription factor ERG for cnidarian germ layer formation and apical domain patterning. Dev Biol (2017) 0.75
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science (2007) 9.79
Parallel construction of orthologous sequence-ready clone contig maps in multiple species. Genome Res (2002) 2.18
Investigating the origins of triploblasty: 'mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; class, Anthozoa). Development (2004) 1.92
Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis. PLoS One (2007) 1.79
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature (2013) 1.76
The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis. Genome Biol (2006) 1.60
StellaBase: the Nematostella vectensis Genomics Database. Nucleic Acids Res (2006) 1.59
Hepatitis C virus variants with decreased sensitivity to direct-acting antivirals (DAAs) were rarely observed in DAA-naive patients prior to treatment. J Virol (2012) 1.50
Genetic analysis of hematological parameters in incipient lines of the collaborative cross. G3 (Bethesda) (2012) 1.35
A high percentage of introns in human genes were present early in animal evolution: evidence from the basal metazoan Nematostella vectensis. Genome Inform (2006) 1.28
Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes. BMC Biol (2012) 1.23
Computation vs. cloning: evaluation of two methods for haplotype determination. Mol Ecol Resour (2008) 1.21
Hepatitis C viral evolution in genotype 1 treatment-naïve and treatment-experienced patients receiving telaprevir-based therapy in clinical trials. PLoS One (2012) 1.19
Conserved and novel gene expression between regeneration and asexual fission in Nematostella vectensis. Dev Genes Evol (2009) 1.14
Genomic insights into Wnt signaling in an early diverging metazoan, the ctenophore Mnemiopsis leidyi. Evodevo (2010) 1.13
Two alleles of NF-kappaB in the sea anemone Nematostella vectensis are widely dispersed in nature and encode proteins with distinct activities. PLoS One (2009) 1.12
Extreme mitochondrial evolution in the ctenophore Mnemiopsis leidyi: Insight from mtDNA and the nuclear genome. Mitochondrial DNA (2011) 1.08
Evolution of the TGF-β signaling pathway and its potential role in the ctenophore, Mnemiopsis leidyi. PLoS One (2011) 1.07
The Radiata and the evolutionary origins of the bilaterian body plan. Mol Phylogenet Evol (2002) 1.07
Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis. BMC Genomics (2011) 1.03
Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis. Dev Genes Evol (2006) 1.02
Collecting, rearing, spawning and inducing regeneration of the starlet sea anemone, Nematostella vectensis. Nat Protoc (2013) 1.02
The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes. J Hered (2013) 1.00
Protein evolution: structure-function relationships of the oncogene beta-catenin in the evolution of multicellular animals. J Exp Zool B Mol Dev Evol (2003) 1.00
Genomic organization, gene structure, and developmental expression of three clustered otx genes in the sea anemone Nematostella vectensis. J Exp Zool B Mol Dev Evol (2007) 0.99
Telaprevir-based treatment effects on hepatitis C virus in liver and blood. Hepatology (2014) 0.99
Domain duplication, divergence, and loss events in vertebrate Msx paralogs reveal phylogenomically informed disease markers. BMC Evol Biol (2009) 0.98
The evolutionary origin of the Runx/CBFbeta transcription factors--studies of the most basal metazoans. BMC Evol Biol (2008) 0.97
Establishing a model organism: a report from the first annual Nematostella meeting. Bioessays (2011) 0.96
CnidBase: The Cnidarian Evolutionary Genomics Database. Nucleic Acids Res (2003) 0.96
Characterization of telaprevir treatment outcomes and resistance in patients with prior treatment failure: results from the REALIZE trial. Hepatology (2012) 0.96
MicroRNAs and essential components of the microRNA processing machinery are not encoded in the genome of the ctenophore Mnemiopsis leidyi. BMC Genomics (2012) 0.96
Genomic survey of candidate stress-response genes in the estuarine anemone Nematostella vectensis. Biol Bull (2008) 0.95
Induction of canonical Wnt signaling by alsterpaullone is sufficient for oral tissue fate during regeneration and embryogenesis in Nematostella vectensis. Dev Dyn (2011) 0.93
Evaluation of persistence of resistant variants with ultra-deep pyrosequencing in chronic hepatitis C patients treated with telaprevir. PLoS One (2012) 0.89
Characterization of the core elements of the NF-κB signaling pathway of the sea anemone Nematostella vectensis. Mol Cell Biol (2010) 0.89
Upgrades to StellaBase facilitate medical and genetic studies on the starlet sea anemone, Nematostella vectensis. Nucleic Acids Res (2007) 0.88
Evolution of function of a fused metazoan tRNA synthetase. Mol Biol Evol (2010) 0.88
The evolutionary diversification of LSF and Grainyhead transcription factors preceded the radiation of basal animal lineages. BMC Evol Biol (2010) 0.88
Ecological and developmental dynamics of a host-parasite system involving a sea anemone and two ctenophores. J Parasitol (2007) 0.87
Concerted evolution of sea anemone neurotoxin genes is revealed through analysis of the Nematostella vectensis genome. Mol Biol Evol (2008) 0.87
The diversification of the LIM superclass at the base of the metazoa increased subcellular complexity and promoted multicellular specialization. PLoS One (2012) 0.86
Intron retention as a posttranscriptional regulatory mechanism of neurotoxin expression at early life stages of the starlet anemone Nematostella vectensis. J Mol Biol (2008) 0.86
A surprising abundance of human disease genes in a simple "basal" animal, the starlet sea anemone (Nematostella vectensis). Genome (2007) 0.85
The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family. Database (Oxford) (2009) 0.85
Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis. Dev Genes Evol (2007) 0.84
Two polymorphic residues account for the differences in DNA binding and transcriptional activation by NF-κB proteins encoded by naturally occurring alleles in Nematostella vectensis. J Mol Evol (2011) 0.83
NF-κB is required for cnidocyte development in the sea anemone Nematostella vectensis. Dev Biol (2012) 0.83
Qualitative shift to indirect development in the parasitic sea anemone Edwardsiella lineata. Integr Comp Biol (2006) 0.83
Coral comparative genomics reveal expanded Hox cluster in the cnidarian-bilaterian ancestor. Integr Comp Biol (2012) 0.82
Characterizing the spatiotemporal expression of RNAs and proteins in the starlet sea anemone, Nematostella vectensis. Nat Protoc (2013) 0.82
Comparative anatomy and histology of developmental and parasitic stages in the life cycle of the lined sea anemone Edwardsiella lineata. J Parasitol (2009) 0.82
Sustained virologic response rates with telaprevir-based therapy in treatment-naive patients evaluated by race or ethnicity. J Clin Gastroenterol (2015) 0.80
Isolation of DNA, RNA and protein from the starlet sea anemone Nematostella vectensis. Nat Protoc (2013) 0.79
Lineage-specific evolution of the vertebrate Otopetrin gene family revealed by comparative genomic analyses. BMC Evol Biol (2011) 0.79
A customized Web portal for the genome of the ctenophore Mnemiopsis leidyi. BMC Genomics (2014) 0.78
A Clue to the Origin of the Bilateria? Science (2005) 0.76
A report from the second Nematostella vectensis research conference. Dev Genes Evol (2013) 0.76
Evolutionary expression of glucose-dependent-insulinotropic polypeptide (GIP). Regul Pept (2011) 0.76
Dynamic changes in HCV RNA levels and viral quasispecies in a patient with chronic hepatitis C after telaprevir-based treatment. J Clin Virol (2011) 0.75