Published in Appl Environ Microbiol on February 01, 2005
The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota. Clin Microbiol Rev (2015) 11.49
Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol (2006) 6.67
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME J (2009) 3.84
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol (2009) 2.75
The under-recognized dominance of Verrucomicrobia in soil bacterial communities. Soil Biol Biochem (2011) 2.42
Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol (2007) 2.41
Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates. Appl Environ Microbiol (2007) 2.03
Detection and cultivation of soil verrucomicrobia. Appl Environ Microbiol (2005) 1.84
Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil. Appl Environ Microbiol (2006) 1.69
Short peptide induces an "uncultivable" microorganism to grow in vitro. Appl Environ Microbiol (2008) 1.56
Global biogeography and quantitative seasonal dynamics of Gemmatimonadetes in soil. Appl Environ Microbiol (2011) 1.35
Current approaches to exploit actinomycetes as a source of novel natural products. J Ind Microbiol Biotechnol (2010) 1.34
Microbial diversity in coastal subsurface sediments: a cultivation approach using various electron acceptors and substrate gradients. Appl Environ Microbiol (2005) 1.27
Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria. Appl Environ Microbiol (2010) 1.21
Cultivating the uncultured: limits, advances and future challenges. Extremophiles (2009) 1.18
Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Appl Environ Microbiol (2006) 1.17
Are uncultivated bacteria really uncultivable? Microbes Environ (2012) 1.14
Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes. Proc Natl Acad Sci U S A (2014) 1.13
Bacterial community structure in the hyperarid core of the Atacama Desert, Chile. Appl Environ Microbiol (2006) 1.13
Isolation and physiology of bacteria from contaminated subsurface sediments. Appl Environ Microbiol (2010) 1.12
Evolution of pan-genomes of Escherichia coli, Shigella spp., and Salmonella enterica. J Bacteriol (2013) 1.11
Hollow-fiber membrane chamber as a device for in situ environmental cultivation. Appl Environ Microbiol (2009) 1.07
Metagenomics of the subsurface Brazos-Trinity Basin (IODP site 1320): comparison with other sediment and pyrosequenced metagenomes. ISME J (2011) 1.03
Diversity of Planctomycetes in soil in relation to soil history and environmental heterogeneity. Appl Environ Microbiol (2006) 1.03
New lineage of filamentous, spore-forming, gram-positive bacteria from soil. Appl Environ Microbiol (2006) 0.99
Multiple DNA extractions coupled with stable-isotope probing of anthracene-degrading bacteria in contaminated soil. Appl Environ Microbiol (2011) 0.99
Distinct growth strategies of soil bacteria as revealed by large-scale colony tracking. Appl Environ Microbiol (2011) 0.96
Central role of the cell in microbial ecology. Microbiol Mol Biol Rev (2009) 0.96
Changes of soil bacterial diversity as a consequence of agricultural land use in a semi-arid ecosystem. PLoS One (2013) 0.95
Multiple approaches to enhance the cultivability of bacteria associated with the marine sponge Haliclona (gellius) sp. Appl Environ Microbiol (2011) 0.94
Recovery of as-yet-uncultured soil acidobacteria on dilute solid media. Appl Environ Microbiol (2011) 0.92
Microbial scout hypothesis and microbial discovery. Appl Environ Microbiol (2012) 0.90
Isolation of a substantial proportion of forest soil bacterial communities detected via pyrotag sequencing. Appl Environ Microbiol (2013) 0.88
Alimentary tract bacteria isolated and identified with API-20E and molecular cloning techniques from Australian tropical fruit flies, Bactrocera cacuminata and B. tryoni. J Insect Sci (2010) 0.87
Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil. Appl Environ Microbiol (2015) 0.86
Decline in topsoil microbial quotient, fungal abundance and C utilization efficiency of rice paddies under heavy metal pollution across South China. PLoS One (2012) 0.86
Biodegradation of Ochratoxin A by Bacterial Strains Isolated from Vineyard Soils. Toxins (Basel) (2015) 0.85
Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Front Microbiol (2015) 0.85
Quorum sensing influences Vibrio harveyi growth rates in a manner not fully accounted for by the marker effect of bioluminescence. PLoS One (2008) 0.85
Heterologous expression of the oxytetracycline biosynthetic pathway in Myxococcus xanthus. Appl Environ Microbiol (2010) 0.84
The Ecology of Acidobacteria: Moving beyond Genes and Genomes. Front Microbiol (2016) 0.83
Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage. Front Microbiol (2015) 0.83
Effects of trace element concentrations on culturing thermophiles. Extremophiles (2012) 0.82
Plant-based culture media: Efficiently support culturing rhizobacteria and correctly mirror their in-situ diversity. J Adv Res (2015) 0.81
In Vitro Culture of Previously Uncultured Oral Bacterial Phylotypes. Appl Environ Microbiol (2015) 0.81
Antibacterial Discovery and Development: From Gene to Product and Back. Biomed Res Int (2015) 0.81
Diversity of bacterial communities in a profile of a winter wheat field: known and unknown members. Microb Ecol (2014) 0.81
Computing minimal nutrient sets from metabolic networks via linear constraint solving. BMC Bioinformatics (2013) 0.80
MediaDB: a database of microbial growth conditions in defined media. PLoS One (2014) 0.80
Bacterial diversity assessment in Antarctic terrestrial and aquatic microbial mats: a comparison between bidirectional pyrosequencing and cultivation. PLoS One (2014) 0.80
Proposal for a method to estimate nutrient shock effects in bacteria. BMC Res Notes (2012) 0.79
Prescreening bacterial colonies for bioactive molecules with Janus plates, a SBS standard double-faced microbial culturing system. Antonie Van Leeuwenhoek (2012) 0.79
Method for assessment of viability and morphological changes of bacteria in the early stage of colony formation on a simulated natural environment. Appl Environ Microbiol (2006) 0.78
Verrucomicrobial community structure and abundance as indicators for changes in chemical factors linked to soil fertility. Antonie Van Leeuwenhoek (2015) 0.77
Innovative Approaches Using Lichen Enriched Media to Improve Isolation and Culturability of Lichen Associated Bacteria. PLoS One (2016) 0.77
Improved cultivation and metagenomics as new tools for bioprospecting in cold environments. Extremophiles (2014) 0.76
Genomic and Transcriptomic Resolution of Organic Matter Utilization Among Deep-Sea Bacteria in Guaymas Basin Hydrothermal Plumes. Front Microbiol (2016) 0.76
The effect of microdosimetric 12C6+ heavy ion irradiation and Mg2+ on canthaxanthin production in a novel strain of Dietzia natronolimnaea. BMC Microbiol (2013) 0.76
Assessing Bacterial Diversity in the Rhizosphere of Thymus zygis Growing in the Sierra Nevada National Park (Spain) through Culture-Dependent and Independent Approaches. PLoS One (2016) 0.76
[Not Available]. Open Microbiol J (2009) 0.75
Effects of Gelling Agent and Extracellular Signaling Molecules on the Culturability of Marine Bacteria. Appl Environ Microbiol (2017) 0.75
Distribution and isolation of strains belonging to the order Solirubrobacterales. J Antibiot (Tokyo) (2015) 0.75
Quorum protection, growth and survival. Microb Cell (2015) 0.75
Microbial Diversity of Browning Peninsula, Eastern Antarctica Revealed Using Molecular and Cultivation Methods. Front Microbiol (2017) 0.75
Bioprospecting Red Sea Coastal Ecosystems for Culturable Microorganisms and Their Antimicrobial Potential. Mar Drugs (2016) 0.75
High-Level Culturability of Epiphytic Bacteria and Frequency of Biosurfactant Producers on Leaves. Appl Environ Microbiol (2016) 0.75
Mobile genetic elements in the bacterial phylum Acidobacteria. Mob Genet Elements (2012) 0.75
Isolation of Uncultured Bacteria from Antarctica Using Long Incubation Periods and Low Nutritional Media. Front Microbiol (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol (1998) 21.35
The uncultured microbial majority. Annu Rev Microbiol (2003) 17.33
Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J Bacteriol (1992) 13.39
Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol (2002) 5.56
Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl Environ Microbiol (2002) 4.22
A comparison of a direct- and a plate counting technique for the quantitative estimation of soil micro-organisms. J Gen Microbiol (1952) 2.97
Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl Environ Microbiol (2003) 2.77
Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil. Appl Environ Microbiol (2001) 2.29
Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. Int J Syst Evol Microbiol (2003) 2.14
Isolation and molecular identification of planctomycete bacteria from postlarvae of the giant tiger prawn, Penaeus monodon. Appl Environ Microbiol (1997) 1.66
Viability of soil bacteria: Optimization of plate-counting technique and comparison between total counts and plate counts within different size groups. Microb Ecol (1987) 1.55
Impact of cultivation on characterisation of species composition of soil bacterial communities. FEMS Microbiol Ecol (2001) 1.45
Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria. Appl Environ Microbiol (2004) 1.22
Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol (2002) 5.56
Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia. Appl Environ Microbiol (2004) 3.81
Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl Environ Microbiol (2003) 2.77
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol (2009) 2.75
Detection and cultivation of soil verrucomicrobia. Appl Environ Microbiol (2005) 1.84
Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities. PLoS One (2013) 1.77
The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions. PLoS One (2010) 1.71
Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil. Appl Environ Microbiol (2006) 1.69
Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities. PLoS One (2013) 1.54
Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes. BMC Microbiol (2009) 1.46
Cultivation of Walsby's square haloarchaeon. FEMS Microbiol Lett (2004) 1.45
New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities. Appl Environ Microbiol (2006) 1.44
Haloquadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain. Int J Syst Evol Microbiol (2007) 1.41
Secretory antibodies do not affect the composition of the bacterial microbiota in the terminal ileum of 10-week-old mice. Appl Environ Microbiol (2003) 1.32
Energetics and kinetics of lactate fermentation to acetate and propionate via methylmalonyl-CoA or acrylyl-CoA. FEMS Microbiol Lett (2002) 1.28
Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria. Appl Environ Microbiol (2004) 1.22
Methanogen community structure in the rumens of farmed sheep, cattle and red deer fed different diets. FEMS Microbiol Ecol (2011) 1.19
Variability of the Chlamydia trachomatis omp1 gene detected in samples from men tested in male-only saunas in Melbourne, Australia. J Clin Microbiol (2004) 1.17
Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini-colony-forming soil bacteria. Environ Microbiol (2010) 1.16
Presence of novel, potentially homoacetogenic bacteria in the rumen as determined by analysis of formyltetrahydrofolate synthetase sequences from ruminants. Appl Environ Microbiol (2010) 1.13
Reduced gut microbial diversity in early life is associated with later development of eczema but not atopy in high-risk infants. Pediatr Allergy Immunol (2012) 1.12
Characterization of rumen ciliate community composition in domestic sheep, deer, and cattle, feeding on varying diets, by means of PCR-DGGE and clone libraries. FEMS Microbiol Ecol (2011) 1.10
Strategies to reduce methane emissions from farmed ruminants grazing on pasture. Vet J (2010) 1.08
Chronic Helicobacter pylori infection does not significantly alter the microbiota of the murine stomach. Appl Environ Microbiol (2006) 1.06
Secretory antibodies reduce systemic antibody responses against the gastrointestinal commensal flora. Int Immunol (2007) 1.03
PCR-generated artefact from 16S rRNA gene-specific primers. FEMS Microbiol Lett (2005) 0.95
Emended description of the genus Trichococcus, description of Trichococcus collinsii sp. nov., and reclassification of Lactosphaera pasteurii as Trichococcus pasteurii comb. nov. and of Ruminococcus palustris as Trichococcus palustris comb. nov. in the low-G+C gram-positive bacteria. Int J Syst Evol Microbiol (2002) 0.93
Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium. J Bacteriol (2011) 0.93
A proposed taxonomy of anaerobic fungi (class neocallimastigomycetes) suitable for large-scale sequence-based community structure analysis. PLoS One (2012) 0.93
Isolation of previously uncultured rumen bacteria by dilution to extinction using a new liquid culture medium. J Microbiol Methods (2010) 0.92
Natronomonas moolapensis sp. nov., non-alkaliphilic isolates recovered from a solar saltern crystallizer pond, and emended description of the genus Natronomonas. Int J Syst Evol Microbiol (2009) 0.90
Prenatal administration of Lactobacillus rhamnosus has no effect on the diversity of the early infant gut microbiota. Pediatr Allergy Immunol (2011) 0.86
Gut-associated denitrification and in vivo emission of nitrous oxide by the earthworm families megascolecidae and lumbricidae in new zealand. Appl Environ Microbiol (2009) 0.85
Propionate formation by Opitutus terrae in pure culture and in mixed culture with a hydrogenotrophic methanogen and implications for carbon fluxes in anoxic rice paddy soil. Appl Environ Microbiol (2002) 0.85
Detection of a reproducible, single-member shift in soil bacterial communities exposed to low levels of hydrogen. Appl Environ Microbiol (2010) 0.85
Halonotius pteroides gen. nov., sp. nov., an extremely halophilic archaeon recovered from a saltern crystallizer. Int J Syst Evol Microbiol (2009) 0.83
Genome sequence of "Pedosphaera parvula" Ellin514, an aerobic Verrucomicrobial isolate from pasture soil. J Bacteriol (2011) 0.83
Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems. J Bacteriol (2011) 0.82
Detection of known and novel genes encoding aromatic ring-hydroxylating dioxygenases in soils and in aromatic hydrocarbon-degrading bacteria. FEMS Microbiol Lett (2002) 0.82
A1Ao-ATP synthase of Methanobrevibacter ruminantium couples sodium ions for ATP synthesis under physiological conditions. J Biol Chem (2011) 0.80
Thiobaca trueperi gen. nov., sp. nov., a phototrophic purple sulfur bacterium isolated from freshwater lake sediment. Int J Syst Evol Microbiol (2002) 0.80
Variations in the abundance and identity of class II aromatic ring-hydroxylating dioxygenase genes in groundwater at an aromatic hydrocarbon-contaminated site. Environ Microbiol (2005) 0.80
An exo-β-(1→3)-D-galactanase from Streptomyces sp. provides insights into type II arabinogalactan structure. Carbohydr Res (2012) 0.79
Considerations in the use of fluorescence in situ hybridization (FISH) and confocal laser scanning microscopy to characterize rumen methanogens and define their spatial distributions. Can J Microbiol (2015) 0.76
Dormant microbes: scouting ahead or plodding along? Nature (2009) 0.76
Erratum: Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. Sci Rep (2016) 0.75