Published in Appl Environ Microbiol on February 05, 2009
Soil microbial community responses to multiple experimental climate change drivers. Appl Environ Microbiol (2009) 2.92
The ecological coherence of high bacterial taxonomic ranks. Nat Rev Microbiol (2010) 2.80
Active and total microbial communities in forest soil are largely different and highly stratified during decomposition. ISME J (2011) 2.48
The microbiome of uncontacted Amerindians. Sci Adv (2015) 2.04
Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions. ISME J (2012) 1.79
Rhizosphere microbiome assemblage is affected by plant development. ISME J (2013) 1.53
Responses of soil bacterial and fungal communities to extreme desiccation and rewetting. ISME J (2013) 1.53
Distinct soil microbial diversity under long-term organic and conventional farming. ISME J (2014) 1.31
Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat. ISME J (2011) 1.28
Changes in the soil bacterial communities in a cedar plantation invaded by moso bamboo. Microb Ecol (2013) 1.25
A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system. Elife (2013) 1.21
Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria. Appl Environ Microbiol (2010) 1.21
Environmental factors affect Acidobacterial communities below the subgroup level in grassland and forest soils. Appl Environ Microbiol (2012) 1.21
Seasonality and resource availability control bacterial and archaeal communities in soils of a temperate beech forest. ISME J (2010) 1.17
Identification of a methylase required for 2-methylhopanoid production and implications for the interpretation of sedimentary hopanes. Proc Natl Acad Sci U S A (2010) 1.17
Influence of soil characteristics on the diversity of bacteria in the Southern Brazilian Atlantic Forest. Appl Environ Microbiol (2010) 1.16
Ecophysiology of Fe-cycling bacteria in acidic sediments. Appl Environ Microbiol (2010) 1.11
13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3. Appl Environ Microbiol (2011) 1.10
Cultivating uncultured bacteria from northern wetlands: knowledge gained and remaining gaps. Front Microbiol (2011) 1.09
Exposure of soil microbial communities to chromium and arsenic alters their diversity and structure. PLoS One (2012) 1.07
Microbial community structure and activity linked to contrasting biogeochemical gradients in bog and fen environments of the Glacial Lake Agassiz Peatland. Appl Environ Microbiol (2012) 1.06
Identification of cellulose-responsive bacterial and fungal communities in geographically and edaphically different soils by using stable isotope probing. Appl Environ Microbiol (2012) 1.06
Bacterial community diversity in the Brazilian Atlantic forest soils. Microb Ecol (2010) 1.01
Insights into the phylogeny and metabolic potential of a primary tropical peat swamp forest microbial community by metagenomic analysis. Microb Ecol (2010) 1.01
Characterization of soil bacterial assemblies in Brazilian savanna-like vegetation reveals acidobacteria dominance. Microb Ecol (2012) 0.98
Aquatic microbial habitats within a neotropical rainforest: bromeliads and pH-associated trends in bacterial diversity and composition. Microb Ecol (2010) 0.97
Altered carbon turnover processes and microbiomes in soils under long-term extremely high CO2 exposure. Nat Microbiol (2016) 0.97
Changes in diversity, abundance, and structure of soil bacterial communities in Brazilian Savanna under different land use systems. Microb Ecol (2013) 0.95
The neomuran revolution and phagotrophic origin of eukaryotes and cilia in the light of intracellular coevolution and a revised tree of life. Cold Spring Harb Perspect Biol (2014) 0.94
Dynamics of soil bacterial communities in response to repeated application of manure containing sulfadiazine. PLoS One (2014) 0.94
Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses. Front Microbiol (2015) 0.93
Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes. ISME J (2014) 0.92
Recovery of as-yet-uncultured soil acidobacteria on dilute solid media. Appl Environ Microbiol (2011) 0.92
Microbial community stratification linked to utilization of carbohydrates and phosphorus limitation in a boreal peatland at Marcell Experimental Forest, Minnesota, USA. Appl Environ Microbiol (2014) 0.92
Thermotomaculum hydrothermale gen. nov., sp. nov., a novel heterotrophic thermophile within the phylum Acidobacteria from a deep-sea hydrothermal vent chimney in the Southern Okinawa Trough. Extremophiles (2012) 0.90
A fresh look at the evolution and diversification of photochemical reaction centers. Photosynth Res (2014) 0.90
The rhizosphere selects for particular groups of acidobacteria and verrucomicrobia. PLoS One (2013) 0.90
The effects of high-tannin leaf litter from transgenic poplars on microbial communities in microcosm soils. Front Microbiol (2013) 0.89
Pan-genome analyses identify lineage- and niche-specific markers of evolution and adaptation in Epsilonproteobacteria. Front Microbiol (2014) 0.89
Comparative analysis of acidobacterial genomic fragments from terrestrial and aquatic metagenomic libraries, with emphasis on acidobacteria subdivision 6. Appl Environ Microbiol (2010) 0.89
Water regime influences bulk soil and Rhizosphere of Cereus jamacaru bacterial communities in the Brazilian Caatinga biome. PLoS One (2013) 0.89
Geothrix fermentans secretes two different redox-active compounds to utilize electron acceptors across a wide range of redox potentials. Appl Environ Microbiol (2012) 0.88
Soil microbial diversity in the vicinity of a Negev Desert shrub--Reaumuria negevensis. Microb Ecol (2010) 0.88
Prokaryotic diversity in sediments beneath two polar glaciers with contrasting organic carbon substrates. Extremophiles (2012) 0.87
Potential for Nitrogen Fixation and Nitrification in the Granite-Hosted Subsurface at Henderson Mine, CO. Front Microbiol (2011) 0.87
In vivo impact of Met221 substitution in GOB metallo-β-lactamase. Antimicrob Agents Chemother (2012) 0.87
Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076. PLoS One (2011) 0.86
Identification of active denitrifiers in rice paddy soil by DNA- and RNA-based analyses. Microbes Environ (2012) 0.86
Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil. Appl Environ Microbiol (2015) 0.86
Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils. ISME J (2015) 0.85
Bacterial indicator of agricultural management for soil under no-till crop production. PLoS One (2012) 0.85
Characterization and identification of productivity-associated rhizobacteria in wheat. Appl Environ Microbiol (2012) 0.84
Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species. Front Microbiol (2015) 0.84
Distinct bacterial communities dominate tropical and temperate zone leaf litter. Microb Ecol (2014) 0.84
Microbial diversity and metabolic networks in acid mine drainage habitats. Front Microbiol (2015) 0.84
Abundance and Diversity of Bacterial, Archaeal, and Fungal Communities Along an Altitudinal Gradient in Alpine Forest Soils: What Are the Driving Factors? Microb Ecol (2016) 0.84
The Ecology of Acidobacteria: Moving beyond Genes and Genomes. Front Microbiol (2016) 0.83
Persistence of the dominant soil phylum Acidobacteria by trace gas scavenging. Proc Natl Acad Sci U S A (2015) 0.83
Controls on bacterial and archaeal community structure and greenhouse gas production in natural, mined, and restored Canadian peatlands. Front Microbiol (2013) 0.83
Taxonomic and functional profiles of soil samples from Atlantic forest and Caatinga biomes in northeastern Brazil. Microbiologyopen (2014) 0.82
Soil Acidobacterial 16S rRNA Gene Sequences Reveal Subgroup Level Differences between Savanna-Like Cerrado and Atlantic Forest Brazilian Biomes. Int J Microbiol (2014) 0.82
A robust PCR primer design platform applied to the detection of Acidobacteria Group 1 in soil. Nucleic Acids Res (2012) 0.82
Extensive gene acquisition in the extremely psychrophilic bacterial species Psychroflexus torquis and the link to sea-ice ecosystem specialism. Genome Biol Evol (2014) 0.82
Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific. Front Microbiol (2016) 0.81
Probing the role of Met221 in the unusual metallo-β-lactamase GOB-18. Inorg Chem (2012) 0.81
Long-chain N-acyl amino acid synthases are linked to the putative PEP-CTERM/exosortase protein-sorting system in Gram-negative bacteria. J Bacteriol (2011) 0.81
Phylogenetic analysis and metabolic potential of microbial communities in an industrial bagasse collection site. Microb Ecol (2013) 0.81
Expanding the World of Marine Bacterial and Archaeal Clades. Front Microbiol (2016) 0.81
Microbial communities in dark oligotrophic volcanic ice cave ecosystems of Mt. Erebus, Antarctica. Front Microbiol (2015) 0.80
Acidobacteria in freshwater ponds at Doñana National Park, Spain. Microb Ecol (2011) 0.80
Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation. Appl Environ Microbiol (2015) 0.80
Novel bacterial community associated with 500-year-old unpreserved archaeological wood from King Henry VIII's Tudor Warship the Mary Rose. Appl Environ Microbiol (2012) 0.80
Highly heterogeneous soil bacterial communities around Terra Nova Bay of Northern Victoria Land, Antarctica. PLoS One (2015) 0.79
Shotgun metagenomic analysis of metabolic diversity and microbial community structure in experimental vernal pools subjected to nitrate pulse. BMC Microbiol (2013) 0.79
Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil. Stand Genomic Sci (2013) 0.78
Carbon flow from volcanic CO2 into soil microbial communities of a wetland mofette. ISME J (2014) 0.78
Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin. Front Microbiol (2016) 0.78
Microbial community composition and ultrastructure of granules from a full-scale anammox reactor. Microb Ecol (2014) 0.78
Bacterial and archaeal communities in the acid pit lake sediments of a chalcopyrite mine. Extremophiles (2013) 0.78
Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T). Stand Genomic Sci (2015) 0.78
Emerging spatial patterns in Antarctic prokaryotes. Front Microbiol (2015) 0.78
Methylophaga and Hyphomicrobium can be used as target genera in monitoring saline water methanol-utilizing denitrification. J Ind Microbiol Biotechnol (2016) 0.77
Comparison of soil bacterial communities in a natural hardwood forest and coniferous plantations in perhumid subtropical low mountains. Bot Stud (2014) 0.77
Culture-independent molecular analysis of bacterial diversity in uranium-ore/-mine waste-contaminated and non-contaminated sites from uranium mines. 3 Biotech (2011) 0.77
Multi-Analytical Approach Reveals Potential Microbial Indicators in Soil for Sugarcane Model Systems. PLoS One (2015) 0.77
Captured metagenomics: large-scale targeting of genes based on 'sequence capture' reveals functional diversity in soils. DNA Res (2015) 0.77
Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil. Stand Genomic Sci (2013) 0.77
Bacterial community structure in two permafrost wetlands on the Tibetan Plateau and Sanjiang Plain, China. Microb Ecol (2014) 0.77
Acidobacteria strains from subdivision 1 act as plant growth-promoting bacteria. Arch Microbiol (2016) 0.77
Bacterial community composition of sediments from artificial Lake Maslak, Istanbul, Turkey. Environ Monit Assess (2011) 0.77
Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters. ISME J (2016) 0.76
Effects of water-saving irrigation on emissions of greenhouse gases and prokaryotic communities in rice paddy soil. Microb Ecol (2014) 0.76
Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)). Stand Genomic Sci (2012) 0.76
Bacterial and archaeal communities in bleached mottles of tropical podzols. Microb Ecol (2014) 0.76
Microbial Diversity in Cerrado Biome (Neotropical Savanna) Soils. PLoS One (2016) 0.76
Differences in Physical and Biochemical Properties of Thermus scotoductus SA-01 Cultured with Dielectric or Convection Heating. Appl Environ Microbiol (2015) 0.76
Microbial communities involved in biological ammonium removal from coal combustion wastewaters. Microb Ecol (2013) 0.76
Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure. PLoS One (2014) 0.76
Deciphering the prokaryotic community and metabolisms in South African deep-mine biofilms through antibody microarrays and graph theory. PLoS One (2014) 0.76
Change in bacterial community structure in response to disturbance of natural hardwood and secondary coniferous forest soils in central taiwan. Microb Ecol (2010) 0.75
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
A whole-genome assembly of Drosophila. Science (2000) 38.48
Comparative metagenomics of microbial communities. Science (2005) 25.88
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science (2001) 21.99
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol (1998) 21.35
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol (1997) 17.52
CD-Search: protein domain annotations on the fly. Nucleic Acids Res (2004) 16.76
Toward automatic reconstruction of a highly resolved tree of life. Science (2006) 14.96
Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl Environ Microbiol (1999) 9.59
rRNA operon copy number reflects ecological strategies of bacteria. Appl Environ Microbiol (2000) 8.80
Toward an ecological classification of soil bacteria. Ecology (2007) 7.60
The integrated microbial genomes (IMG) system. Nucleic Acids Res (2006) 7.34
Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl Environ Microbiol (1997) 7.05
Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol (2006) 6.67
Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol (2002) 5.56
Genetics and assembly line enzymology of siderophore biosynthesis in bacteria. Microbiol Mol Biol Rev (2002) 5.12
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature (2004) 5.00
Microbial genome analyses: global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities. J Mol Biol (1998) 4.82
Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum. Appl Environ Microbiol (2007) 4.64
A new strategy for genome sequencing. Nature (1996) 4.61
A permease-oxidase complex involved in high-affinity iron uptake in yeast. Science (1996) 4.60
Empirical and theoretical bacterial diversity in four Arizona soils. Appl Environ Microbiol (2002) 4.26
Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl Environ Microbiol (1999) 3.89
Microbial genes in the human genome: lateral transfer or gene loss? Science (2001) 3.87
Microbial iron transport. Annu Rev Microbiol (1994) 3.75
Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol (1993) 3.35
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. Proc Natl Acad Sci U S A (2002) 3.19
Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project. Genomics (1999) 3.14
Phylogenomics: intersection of evolution and genomics. Science (2003) 2.86
Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model. Mol Microbiol (2002) 2.85
Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl Environ Microbiol (2003) 2.77
Touch and go: tying TonB to transport. Mol Microbiol (2003) 2.72
Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics. Mol Microbiol (2003) 2.65
Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds. Arch Microbiol (1994) 2.64
A clustering method for repeat analysis in DNA sequences. Genome Biol (2001) 2.59
A phylogenomic study of the MutS family of proteins. Nucleic Acids Res (1998) 2.54
Distribution, diversity and ecology of aerobic CO-oxidizing bacteria. Nat Rev Microbiol (2007) 2.48
Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol (2007) 2.41
Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic. BMC Biol (2006) 2.35
Functional, biochemical and genetic diversity of prokaryotic nitrate reductases. Cell Mol Life Sci (2001) 2.34
Diversity and dynamics of microbial communities in soils from agro-ecosystems. Environ Microbiol (2003) 2.34
Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria. Appl Environ Microbiol (2005) 2.30
Small-Scale DNA Sample Preparation Method for Field PCR Detection of Microbial Cells and Spores in Soil. Appl Environ Microbiol (1998) 2.28
Comparative genomic analyses of the bacterial phosphotransferase system. Microbiol Mol Biol Rev (2005) 2.26
Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium. Science (2007) 2.21
Formation of a gated channel by a ligand-specific transport protein in the bacterial outer membrane. Science (1992) 2.19
Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. Appl Environ Microbiol (2007) 2.15
Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. Int J Syst Bacteriol (1999) 2.11
Iron acquisition and virulence in Helicobacter pylori: a major role for FeoB, a high-affinity ferrous iron transporter. Mol Microbiol (2000) 2.08
Phylogenetic analysis and in situ identification of bacteria community composition in an acidic Sphagnum peat bog. Appl Environ Microbiol (2006) 1.99
A widely distributed bacterial pathway for siderophore biosynthesis independent of nonribosomal peptide synthetases. Chembiochem (2005) 1.96
Ways of assembling complex natural products on modular nonribosomal peptide synthetases. Chembiochem (2002) 1.85
Metagenomics of the deep Mediterranean, a warm bathypelagic habitat. PLoS One (2007) 1.78
Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil. Appl Environ Microbiol (2006) 1.69
Thin aggregative fimbriae and cellulose enhance long-term survival and persistence of Salmonella. J Bacteriol (2006) 1.65
Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand. Environ Microbiol (2008) 1.61
Life history implications of rRNA gene copy number in Escherichia coli. Appl Environ Microbiol (2004) 1.59
Secator: a program for inferring protein subfamilies from phylogenetic trees. Mol Biol Evol (2001) 1.57
Microbial communities and geochemical dynamics in an extremely acidic, metal-rich stream at an abandoned sulfide mine (Huelva, Spain) underpinned by two functional primary production systems. Environ Microbiol (2007) 1.55
Diversity of siderophore-mediated iron uptake systems in fluorescent pseudomonads: not only pyoverdines. Environ Microbiol (2002) 1.53
Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts. Appl Environ Microbiol (2006) 1.53
SEARCHPKS: A program for detection and analysis of polyketide synthase domains. Nucleic Acids Res (2003) 1.43
The multicopper oxidase of Pseudomonas aeruginosa is a ferroxidase with a central role in iron acquisition. Mol Microbiol (2002) 1.41
Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge. Environ Microbiol (2003) 1.40
Acidiphilium aminolytica sp. nov.: An acidophilic chemoorganotrophic bacterium isolated from acidic mineral environment. Curr Microbiol (1993) 1.36
Why are there so many carbohydrate-active enzyme-related genes in plants? Trends Plant Sci (2003) 1.34
Biofilm formation and cellulose expression among diverse environmental Pseudomonas isolates. Environ Microbiol (2006) 1.30
The heterologous siderophores ferrioxamine B and ferrichrome activate signaling pathways in Pseudomonas aeruginosa. J Bacteriol (2006) 1.26
Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria. Appl Environ Microbiol (2004) 1.22
Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils. Int J Syst Evol Microbiol (2008) 1.21
Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat. ISME J (2008) 1.12
A metagenomic analysis of soil bacteria extends the diversity of quorum-quenching lactonases. Environ Microbiol (2008) 1.11
Diversity and abundance of Bacteria and Archaea in the Bor Khlueng Hot Spring in Thailand. J Basic Microbiol (2004) 1.08
Regulation and manipulation of the gene clusters encoding type-I PKSs. Trends Biotechnol (2000) 1.04
Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece). Appl Environ Microbiol (2000) 1.00
Bacterial diversity in soil samples from two uranium waste piles as determined by rep-APD, RISA and 16S rDNA retrieval. Antonie Van Leeuwenhoek (2001) 0.99
A culture-based study of the bacterial communities within the guts of nine longicorn beetle species and their exo-enzyme producing properties for degrading xylan and pectin. J Microbiol (2007) 0.98
Bacterial diversity based on 16S rRNA and gyrB genes at Yinshan mine, China. Syst Appl Microbiol (2008) 0.95
Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil. FEMS Microbiol Lett (2008) 0.94
Isolation and characterization of Acidicaldus organivorus, gen. nov., sp. nov.: a novel sulfur-oxidizing, ferric iron-reducing thermo-acidophilic heterotrophic Proteobacterium. Arch Microbiol (2006) 0.93
The role of the nitrate respiration element of Thermus thermophilus in the control and activity of the denitrification apparatus. Environ Microbiol (2008) 0.93
Diversity and in situ quantification of Acidobacteria subdivision 1 in an acidic mining lake. FEMS Microbiol Ecol (2007) 0.90
Identification of the Acidobacterium capsulatum LexA box reveals a lateral acquisition of the Alphaproteobacteria lexA gene. Microbiology (2006) 0.89
pH gradient-induced heterogeneity of Fe(III)-reducing microorganisms in coal mining-associated lake sediments. Appl Environ Microbiol (2007) 0.88
Bacterial diversity in a finished compost and vermicompost: differences revealed by cultivation-independent analyses of PCR-amplified 16S rRNA genes. Appl Microbiol Biotechnol (2006) 0.88
Impact of chromium-contaminated wastewaters on the microbial community of a river. FEMS Microbiol Ecol (2005) 0.86
Amino acid activation and polymerization at modular multienzymes in nonribosomal peptide biosynthesis. Amino Acids (1996) 0.83
"Bioshrouding": a novel approach for securing reactive mineral tailings. Biotechnol Lett (2007) 0.79
Iron gate: the translocation system. J Bacteriol (2006) 0.78
A core gut microbiome in obese and lean twins. Nature (2008) 52.30
Diversity of the human intestinal microbial flora. Science (2005) 49.64
Environmental genome shotgun sequencing of the Sargasso Sea. Science (2004) 45.23
Genome sequence of the human malaria parasite Plasmodium falciparum. Nature (2002) 37.89
Metagenomic analysis of the human distal gut microbiome. Science (2006) 29.76
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res (2008) 27.83
InterPro: the integrative protein signature database. Nucleic Acids Res (2008) 25.07
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res (2003) 24.72
The genome sequence of the malaria mosquito Anopheles gambiae. Science (2002) 20.36
International network of cancer genome projects. Nature (2010) 20.35
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. OMICS (2008) 18.69
Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol (2011) 17.11
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature (2009) 15.06
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proc Natl Acad Sci U S A (2005) 14.59
Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol (2006) 14.24
The TIGRFAMs database of protein families. Nucleic Acids Res (2003) 13.59
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res (2011) 13.45
New developments in the InterPro database. Nucleic Acids Res (2007) 12.49
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol (2005) 11.82
The genome sequence of the filamentous fungus Neurospora crassa. Nature (2003) 11.39
Sequencing of 50 human exomes reveals adaptation to high altitude. Science (2010) 11.27
The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science (2007) 11.15
Functional metagenomic profiling of nine biomes. Nature (2008) 11.00
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature (2003) 10.38
The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res (2013) 10.24
The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science (2004) 9.97
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature (2002) 8.92
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res (2006) 8.89
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science (2011) 8.88
Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science (2013) 8.81
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature (2005) 8.55
A catalog of reference genomes from the human microbiome. Science (2010) 8.10
Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system. Proc Natl Acad Sci U S A (2006) 7.99
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol (2004) 7.95
Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci U S A (2006) 7.77
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. Proc Natl Acad Sci U S A (2006) 7.17
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc Natl Acad Sci U S A (2010) 7.09
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat Biotechnol (2002) 6.96
The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature (2008) 6.70
An evolving hierarchical family classification for glycosyltransferases. J Mol Biol (2003) 6.48
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature (2009) 6.44
Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res (2013) 6.36
Metabolic reconstruction for metagenomic data and its application to the human microbiome. PLoS Comput Biol (2012) 6.27
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol (2007) 6.21
Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing. Proc Natl Acad Sci U S A (2007) 6.14
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol (2008) 6.02
Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Nature (2008) 5.96
Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics. Bioinformatics (2004) 5.91