Published in Plant Cell Physiol on February 02, 2005
Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiol (2006) 2.55
Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiol (2006) 2.01
Changes in transcriptional profiles are associated with early fruit tissue specialization in tomato. Plant Physiol (2005) 1.63
A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines. Plant Cell (2013) 1.41
Malate plays a crucial role in starch metabolism, ripening, and soluble solid content of tomato fruit and affects postharvest softening. Plant Cell (2011) 1.40
SlARF4, an auxin response factor involved in the control of sugar metabolism during tomato fruit development. Plant Physiol (2013) 1.12
Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii. Plant Physiol (2010) 1.10
The influence of fruit load on the tomato pericarp metabolome in a Solanum chmielewskii introgression line population. Plant Physiol (2010) 1.01
Model-assisted analysis of sugar metabolism throughout tomato fruit development reveals enzyme and carrier properties in relation to vacuole expansion. Plant Cell (2014) 0.98
A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. J Exp Bot (2008) 0.97
Metabolic analysis of kiwifruit (Actinidia deliciosa) berries from extreme genotypes reveals hallmarks for fruit starch metabolism. J Exp Bot (2013) 0.95
Using metabolomics to estimate unintended effects in transgenic crop plants: problems, promises, and opportunities. J Biomol Tech (2008) 0.92
Role of metabolite transporters in source-sink carbon allocation. Front Plant Sci (2013) 0.92
Salinity induces carbohydrate accumulation and sugar-regulated starch biosynthetic genes in tomato (Solanum lycopersicum L. cv. 'Micro-Tom') fruits in an ABA- and osmotic stress-independent manner. J Exp Bot (2009) 0.90
Metabolic engineering of tomato fruit organic acid content guided by biochemical analysis of an introgression line. Plant Physiol (2012) 0.87
Hormonal and metabolic regulation of tomato fruit sink activity and yield under salinity. J Exp Bot (2014) 0.85
Pyrophosphate levels strongly influence ascorbate and starch content in tomato fruit. Front Plant Sci (2013) 0.80
Functional characterization of an invertase inhibitor gene involved in sucrose metabolism in tomato fruit. J Zhejiang Univ Sci B (2015) 0.77
Phytochromobilin deficiency impairs sugar metabolism through the regulation of cytokinin and auxin signaling in tomato fruits. Sci Rep (2017) 0.75
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Res (2012) 7.48
GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics (2004) 7.33
Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc (2006) 6.33
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol (2006) 4.47
Sucrose efflux mediated by SWEET proteins as a key step for phloem transport. Science (2011) 3.66
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics (2006) 3.34
GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Lett (2005) 3.29
Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport. Curr Opin Plant Biol (2004) 2.79
Metabolic priming by a secreted fungal effector. Nature (2011) 2.56
Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiol (2006) 2.55
Starch as a major integrator in the regulation of plant growth. Proc Natl Acad Sci U S A (2009) 2.47
Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiol (2003) 2.40
Zooming in on a quantitative trait for tomato yield using interspecific introgressions. Science (2004) 2.37
Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde. Proc Natl Acad Sci U S A (2006) 2.30
Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proc Natl Acad Sci U S A (2008) 2.26
Photorespiration: players, partners and origin. Trends Plant Sci (2010) 2.23
PlaNet: combined sequence and expression comparisons across plant networks derived from seven species. Plant Cell (2011) 2.13
Highway or byway: the metabolic role of the GABA shunt in plants. Trends Plant Sci (2007) 2.12
Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature (2011) 2.06
Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiol (2006) 2.01
Metabolic regulation underlying tomato fruit development. J Exp Bot (2006) 2.01
Not just a circle: flux modes in the plant TCA cycle. Trends Plant Sci (2010) 1.96
A genome-scale metabolic model of Arabidopsis and some of its properties. Plant Physiol (2009) 1.95
Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation. Plant Cell (2011) 1.88
Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant J (2007) 1.84
Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis. Plant Physiol (2010) 1.82
Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells. Plant Cell (2003) 1.80
Regulatory features underlying pollination-dependent and -independent tomato fruit set revealed by transcript and primary metabolite profiling. Plant Cell (2009) 1.79
Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Rep (2003) 1.76
The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity. Plant Physiol Biochem (2013) 1.76
JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in Arabidopsis. Plant Cell (2012) 1.75
Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants. Plant Physiol (2005) 1.75
Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions. Mol Plant (2010) 1.75
On the origins of nitric oxide. Trends Plant Sci (2010) 1.69
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environ (2013) 1.69
A reevaluation of the key factors that influence tomato fruit softening and integrity. Plant Physiol (2007) 1.66
Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex. J Exp Bot (2004) 1.66
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proc Natl Acad Sci U S A (2013) 1.63
Identification of the 2-hydroxyglutarate and isovaleryl-CoA dehydrogenases as alternative electron donors linking lysine catabolism to the electron transport chain of Arabidopsis mitochondria. Plant Cell (2010) 1.63
Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling. Plant Cell (2007) 1.62
Recommendations for reporting metabolite data. Plant Cell (2011) 1.61
Plant metabolomics: towards biological function and mechanism. Trends Plant Sci (2006) 1.61
Role of Lon1 protease in post-germinative growth and maintenance of mitochondrial function in Arabidopsis thaliana. New Phytol (2008) 1.58
ROS signalling--specificity is required. Trends Plant Sci (2010) 1.58
Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening. Plant Cell (2011) 1.57
Mode of inheritance of primary metabolic traits in tomato. Plant Cell (2008) 1.56
From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions. Curr Opin Biotechnol (2003) 1.56
The use of metabolomics to dissect plant responses to abiotic stresses. Cell Mol Life Sci (2012) 1.55
Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development. Plant Physiol (2008) 1.53
Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato. Plant Physiol (2003) 1.52
Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Mol Biol (2006) 1.52
Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nat Protoc (2010) 1.51
Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions. Plant Physiol (2011) 1.51
Coordination of nuclear and mitochondrial genome expression during mitochondrial biogenesis in Arabidopsis. Plant Cell (2005) 1.48
The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation. Plant Cell (2005) 1.47
A bypass of sucrose synthase leads to low internal oxygen and impaired metabolic performance in growing potato tubers. Plant Physiol (2003) 1.46
Evolution, structure and function of mitochondrial carriers: a review with new insights. Plant J (2011) 1.45
Developmental stage specificity and the role of mitochondrial metabolism in the response of Arabidopsis leaves to prolonged mild osmotic stress. Plant Physiol (2009) 1.44
The NADPH-dependent thioredoxin system constitutes a functional backup for cytosolic glutathione reductase in Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.43
Light-responsive metabolite and transcript levels are maintained following a dark-adaptation period in leaves of Arabidopsis thaliana. New Phytol (2012) 1.43
The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiol (2006) 1.43
Seed desiccation: a bridge between maturation and germination. Trends Plant Sci (2010) 1.43
Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants. Ann Bot (2008) 1.43
A biologically inspired validity measure for comparison of clustering methods over metabolic data sets. IEEE/ACM Trans Comput Biol Bioinform (2012) 1.42
Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. Plant Cell (2010) 1.41
Dynamic plastid redox signals integrate gene expression and metabolism to induce distinct metabolic states in photosynthetic acclimation in Arabidopsis. Plant Cell (2009) 1.41
Molecular regulation of seed and fruit set. Trends Plant Sci (2012) 1.40
Malate plays a crucial role in starch metabolism, ripening, and soluble solid content of tomato fruit and affects postharvest softening. Plant Cell (2011) 1.40
Proteins of diverse function and subcellular location are lysine acetylated in Arabidopsis. Plant Physiol (2011) 1.40
Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography-mass spectrometry following incubation in (13)C labelled isotopes. Plant J (2004) 1.37
Metabolic fluxes in an illuminated Arabidopsis rosette. Plant Cell (2013) 1.36
The mitochondrial type II peroxiredoxin F is essential for redox homeostasis and root growth of Arabidopsis thaliana under stress. J Biol Chem (2005) 1.35
Mitochondrial uncoupling protein is required for efficient photosynthesis. Proc Natl Acad Sci U S A (2006) 1.35
High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. Plant J (2011) 1.34
Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways. Plant J (2006) 1.33
Vitamin deficiencies in humans: can plant science help? Plant Cell (2012) 1.33
Rice endosperm iron biofortification by targeted and synergistic action of nicotianamine synthase and ferritin. Plant Biotechnol J (2009) 1.33
Protein degradation - an alternative respiratory substrate for stressed plants. Trends Plant Sci (2011) 1.33
A cytosolic pathway for the conversion of hydroxypyruvate to glycerate during photorespiration in Arabidopsis. Plant Cell (2008) 1.32
Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles. Methods Mol Biol (2007) 1.32
Glycolysis and the tricarboxylic acid cycle are linked by alanine aminotransferase during hypoxia induced by waterlogging of Lotus japonicus. Plant Physiol (2010) 1.32
A custom microarray analysis of gene expression during programmed cell death in Arabidopsis thaliana. Plant J (2002) 1.31
Starch content and yield increase as a result of altering adenylate pools in transgenic plants. Nat Biotechnol (2002) 1.30
Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis. Plant Cell Environ (2008) 1.30