Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior.

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Published in Plant Physiol on October 27, 2006

Authors

Fernando Carrari1, Charles Baxter, Björn Usadel, Ewa Urbanczyk-Wochniak, Maria-Ines Zanor, Adriano Nunes-Nesi, Victoria Nikiforova, Danilo Centero, Antje Ratzka, Markus Pauly, Lee J Sweetlove, Alisdair R Fernie

Author Affiliations

1: Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14476 Golm-Postdam, Germany.

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Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling. Plant Cell (2007) 1.62

Plant metabolomics: towards biological function and mechanism. Trends Plant Sci (2006) 1.61

Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm. Plant Physiol (2009) 1.61

Recommendations for reporting metabolite data. Plant Cell (2011) 1.61

Role of Lon1 protease in post-germinative growth and maintenance of mitochondrial function in Arabidopsis thaliana. New Phytol (2008) 1.58

ROS signalling--specificity is required. Trends Plant Sci (2010) 1.58

Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening. Plant Cell (2011) 1.57

Mode of inheritance of primary metabolic traits in tomato. Plant Cell (2008) 1.56

From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions. Curr Opin Biotechnol (2003) 1.56

The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. Nucleic Acids Res (2011) 1.56

A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiol (2005) 1.55

The use of metabolomics to dissect plant responses to abiotic stresses. Cell Mol Life Sci (2012) 1.55

Changes in cell wall polysaccharides in developing barley (Hordeum vulgare) coleoptiles. Planta (2005) 1.54

Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development. Plant Physiol (2008) 1.53

Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato. Plant Physiol (2003) 1.52

Arabidopsis and primary photosynthetic metabolism - more than the icing on the cake. Plant J (2010) 1.52

Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Mol Biol (2006) 1.52

Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nat Protoc (2010) 1.51

Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions. Plant Physiol (2011) 1.51

Coordination of nuclear and mitochondrial genome expression during mitochondrial biogenesis in Arabidopsis. Plant Cell (2005) 1.48