Mass fractal dimension and the compactness of proteins.

PubWeight™: 1.24‹?› | Rank: Top 10%

🔗 View Article (PMID 15697635)

Published in Phys Rev E Stat Nonlin Soft Matter Phys on January 27, 2005

Authors

Matthew B Enright1, David M Leitner

Author Affiliations

1: Department of Chemistry and Chemical Physics Program, University of Nevada, Reno, Nevada 89557, USA.

Articles citing this

Protein robustness promotes evolutionary innovations on large evolutionary time-scales. Proc Biol Sci (2008) 1.16

How adequate are one- and two-dimensional free energy landscapes for protein folding dynamics? Phys Rev Lett (2009) 0.99

Misplaced helix slows down ultrafast pressure-jump protein folding. Proc Natl Acad Sci U S A (2013) 0.95

Revisiting the myths of protein interior: studying proteins with mass-fractal hydrophobicity-fractal and polarizability-fractal dimensions. PLoS One (2009) 0.88

Anomalies in the vibrational dynamics of proteins are a consequence of fractal-like structure. Proc Natl Acad Sci U S A (2010) 0.88

Fast protein folding kinetics. Q Rev Biophys (2014) 0.86

Coexistence of flexibility and stability of proteins: an equation of state. PLoS One (2009) 0.83

Peptide aggregation in finite systems. Biophys J (2008) 0.83

Water and backbone dynamics in a hydrated protein. Biophys J (2010) 0.81

Protein dynamics: from molecules, to interactions, to biology. Int J Mol Sci (2009) 0.75

Fast-folding proteins under stress. Cell Mol Life Sci (2015) 0.75

Molecular weight-gyration radius relation of globular proteins: a comparison of light scattering, small-angle X-ray scattering and structure-based data. J Appl Crystallogr (2015) 0.75

Immunoglobulin Structure Exhibits Control over CDR Motion. Immunome Res (2011) 0.75

On the Mass Fractal Character of Si-Based Structural Networks in Amorphous Polymer Derived Ceramics. Nanomaterials (Basel) (2015) 0.75

Articles by these authors

An extended dynamical hydration shell around proteins. Proc Natl Acad Sci U S A (2007) 1.59

Long-range protein-water dynamics in hyperactive insect antifreeze proteins. Proc Natl Acad Sci U S A (2012) 0.97

Protein sequence- and pH-dependent hydration probed by terahertz spectroscopy. J Am Chem Soc (2008) 0.95

Free energy landscape of a biomolecule in dihedral principal component space: sampling convergence and correspondence between structures and minima. Proteins (2007) 0.94

Solvation dynamics of biomolecules: modeling and terahertz experiments. HFSP J (2008) 0.84

Heat flow in proteins: computation of thermal transport coefficients. J Chem Phys (2005) 0.83

Rattling in the cage: ions as probes of sub-picosecond water network dynamics. J Am Chem Soc (2009) 0.82

Communication maps computed for homodimeric hemoglobin: computational study of water-mediated energy transport in proteins. J Chem Phys (2011) 0.81

Dynamics of water clusters confined in proteins: a molecular dynamics simulation study of interfacial waters in a dimeric hemoglobin. J Phys Chem B (2010) 0.80

CF3CH3 --> HF + CF2CH2: a non-RRKM reaction? J Phys Chem A (2006) 0.79

Hydration dependence of the mass fractal dimension and anomalous diffusion of vibrational energy in proteins. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.78

Vibrational energy flow through the green fluorescent protein-water interface: communication maps and thermal boundary conductance. J Phys Chem B (2014) 0.77

Communication maps of vibrational energy transport through Photoactive Yellow Protein. J Phys Chem A (2014) 0.77

The role of sulfates on antifreeze protein activity. J Phys Chem B (2014) 0.76

Quantum energy flow and the kinetics of water shuttling between hydrogen bonding sites on trans-formanilide. J Chem Phys (2007) 0.75

Influence of vibrational energy flow on isomerization of flexible molecules: incorporating non-Rice-Ramsperger-Kassel-Marcus kinetics in the simulation of dipeptide isomerization. J Chem Phys (2005) 0.75

Thermal transport coefficients for liquid and glassy water computed from a harmonic aqueous glass. J Chem Phys (2005) 0.75