PubRank

Gerard Cagney

Author PubWeight™ 124.40‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006 24.29
2 Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments. Brief Bioinform 2007 8.26
3 Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II. Mol Cell Biol 2003 6.79
4 RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach. Mol Cell Biol 2002 5.04
5 Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone. Cell 2005 4.95
6 Host cell factors in HIV replication: meta-analysis of genome-wide studies. PLoS Pathog 2009 4.24
7 Human Proteinpedia enables sharing of human protein data. Nat Biotechnol 2008 4.21
8 High-definition macromolecular composition of yeast RNA-processing complexes. Mol Cell 2004 4.18
9 Global landscape of HIV-human protein complexes. Nature 2011 3.70
10 Detailed identification of plasma proteins adsorbed on copolymer nanoparticles. Angew Chem Int Ed Engl 2007 3.41
11 Functional organization of the S. cerevisiae phosphorylation network. Cell 2009 3.15
12 A panoramic view of yeast noncoding RNA processing. Cell 2003 3.11
13 A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing. Mol Cell 2008 2.96
14 Characterization of the proteins released from activated platelets leads to localization of novel platelet proteins in human atherosclerotic lesions. Blood 2003 2.73
15 HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells. Traffic 2010 2.47
16 Proteasome involvement in the repair of DNA double-strand breaks. Mol Cell 2004 2.17
17 SpecAlign--processing and alignment of mass spectra datasets. Bioinformatics 2005 2.13
18 Hierarchical modularity and the evolution of genetic interactomes across species. Mol Cell 2012 1.88
19 Ctf3p, the Mis6 budding yeast homolog, interacts with Mcm22p and Mcm16p at the yeast outer kinetochore. Genes Dev 2002 1.88
20 Polycomb-like 2 associates with PRC2 and regulates transcriptional networks during mouse embryonic stem cell self-renewal and differentiation. Cell Stem Cell 2010 1.74
21 Quantitative genetic-interaction mapping in mammalian cells. Nat Methods 2013 1.68
22 Quantitative genetic interactions reveal biological modularity. Cell 2010 1.64
23 Annexin-1 and peptide derivatives are released by apoptotic cells and stimulate phagocytosis of apoptotic neutrophils by macrophages. J Immunol 2007 1.59
24 Polycomb PHF19 binds H3K36me3 and recruits PRC2 and demethylase NO66 to embryonic stem cell genes during differentiation. Nat Struct Mol Biol 2012 1.52
25 Omega-3 fatty acid deficiency disrupts endocytosis, neuritogenesis, and mitochondrial protein pathways in the mouse hippocampus. Front Genet 2013 1.43
26 Moderation of the platelet releasate response by aspirin. Blood 2007 1.26
27 msmsEval: tandem mass spectral quality assignment for high-throughput proteomics. BMC Bioinformatics 2007 1.17
28 Chl4p and iml3p are two new members of the budding yeast outer kinetochore. Mol Biol Cell 2003 1.15
29 Requirement of Skp1-Bub1 interaction for kinetochore-mediated activation of the spindle checkpoint. Mol Cell 2003 1.07
30 An overview of label-free quantitation methods in proteomics by mass spectrometry. Methods Mol Biol 2010 1.07
31 Polycomb-like 3 promotes polycomb repressive complex 2 binding to CpG islands and embryonic stem cell self-renewal. PLoS Genet 2012 1.07
32 Epistatic relationships reveal the functional organization of yeast transcription factors. Mol Syst Biol 2010 1.05
33 A skeleton of the human protein interactome. Cell 2005 1.00
34 Small ubiquitin-related modifier (SUMO)-1 promotes glycolysis in hypoxia. J Biol Chem 2010 0.95
35 Ensemble non-negative matrix factorization methods for clustering protein-protein interactions. Bioinformatics 2008 0.94
36 Optimal stepwise experimental design for pairwise functional interaction studies. Bioinformatics 2008 0.90
37 Missing value imputation for epistatic MAPs. BMC Bioinformatics 2010 0.88
38 Analysis of the Pseudomonas putida CA-3 proteome during growth on styrene under nitrogen-limiting and non-limiting conditions. Microbiology 2009 0.86
39 Investigating the in vivo activity of the DeaD protein using protein-protein interactions and the translational activity of structured chloramphenicol acetyltransferase mRNAs. J Cell Biochem 2007 0.86
40 All or nothing: protein complexes flip essentiality between distantly related eukaryotes. Genome Biol Evol 2013 0.84
41 Sequential interval motif search: unrestricted database surveys of global MS/MS data sets for detection of putative post-translational modifications. Anal Chem 2008 0.83
42 Activity profiling of platelets by chemical proteomics. Proteomics 2009 0.82
43 Proteomics strategy for identifying candidate bioactive proteins in complex mixtures: application to the platelet releasate. J Biomed Biotechnol 2010 0.80
44 Invadolysin, a conserved lipid-droplet-associated metalloproteinase, is required for mitochondrial function in Drosophila. J Cell Sci 2013 0.79
45 The effect of polyphosphate kinase gene deletion on polyhydroxyalkanoate accumulation and carbon metabolism in Pseudomonas putida KT2440. Environ Microbiol Rep 2013 0.79
46 Imputing and predicting quantitative genetic interactions in epistatic MAPs. Methods Mol Biol 2011 0.78
47 Identification of Apolipoprotein AI as a serum biomarker of chronic kidney disease in liver transplant recipients, using proteomic techniques. Proteomics Clin Appl 2008 0.78
48 Identification of β2-microglobulin as a urinary biomarker for chronic allograft nephropathy using proteomic methods. Proteomics Clin Appl 2011 0.78
49 Improved functional overview of protein complexes using inferred epistatic relationships. BMC Syst Biol 2011 0.77
50 A central resource for platelet proteomics. Arterioscler Thromb Vasc Biol 2008 0.77
51 Maternal immune activation induces changes in myelin and metabolic proteins, some of which can be prevented with risperidone in adolescence. Dev Neurosci 2015 0.76
52 Application of proteomics to the study of platelet regulatory mechanisms. Trends Cardiovasc Med 2004 0.76
53 Distinct configurations of protein complexes and biochemical pathways revealed by epistatic interaction network motifs. BMC Syst Biol 2011 0.75
54 Adolescent Risperidone treatment alters protein expression associated with protein trafficking and cellular metabolism in the adult rat prefrontal cortex. Proteomics 2014 0.75
55 Nimesulide 90 mg orally twice daily does not influence postoperative morphine requirements after major chest surgery. Anesth Analg 2008 0.75
56 Corrigendum: miR302 regulates SNAI1 expression to control mesangial cell plasticity. Sci Rep 2017 0.75
57 Dysregulation of miRNA-9 in a Subset of Schizophrenia Patient-Derived Neural Progenitor Cells. Cell Rep 2017 0.75