Published in Genome Res on April 01, 2005
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Assembly reflects evolution of protein complexes. Nature (2008) 2.27
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The folding and evolution of multidomain proteins. Nat Rev Mol Cell Biol (2007) 2.16
FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster. Bioinformatics (2006) 2.13
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The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development. Blood (2009) 1.97
The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity. Development (2003) 1.96
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Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs. Cell Stem Cell (2012) 1.80
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FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database. Nucleic Acids Res (2009) 1.48
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Functional protein divergence in the evolution of Homo sapiens. Genome Biol (2008) 1.32
Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum. Genome Res (2003) 1.29
Assessing computational methods of cis-regulatory module prediction. PLoS Comput Biol (2010) 1.27
BloodExpress: a database of gene expression in mouse haematopoiesis. Nucleic Acids Res (2008) 1.24
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Probing the diverse landscape of protein flexibility and binding. Curr Opin Struct Biol (2012) 1.14
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The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome. Genome Res (2009) 1.06
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The developmental expression dynamics of Drosophila melanogaster transcription factors. Genome Biol (2010) 0.96
Analysis and simulation of gene expression profiles in pure and mixed cell populations. Phys Biol (2011) 0.93
Parallel dynamics and evolution: Protein conformational fluctuations and assembly reflect evolutionary changes in sequence and structure. Bioessays (2013) 0.93
The role of salt bridges, charge density, and subunit flexibility in determining disassembly routes of protein complexes. Structure (2013) 0.92
The emergence of protein complexes: quaternary structure, dynamics and allostery. Colworth Medal Lecture. Biochem Soc Trans (2012) 0.92
Evolution of oligomeric state through geometric coupling of protein interfaces. Proc Natl Acad Sci U S A (2012) 0.92
The properties of protein family space depend on experimental design. Bioinformatics (2005) 0.91
Protein domain organisation: adding order. BMC Bioinformatics (2009) 0.91
Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes. Mol Biosyst (2013) 0.90
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How do proteins gain new domains? Genome Biol (2010) 0.88
Duel of the fates: the role of transcriptional circuits and noise in CD4+ cells. Curr Opin Cell Biol (2012) 0.87
Evolution of protein structures and interactions from the perspective of residue contact networks. Curr Opin Struct Biol (2013) 0.87
Nuclear receptors: the evolution of diversity. Sci STKE (2004) 0.86
Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae. Genome Res (2002) 0.85
Homomeric protein complexes: evolution and assembly. Biochem Soc Trans (2010) 0.84
The impact of gene expression regulation on evolution of extracellular signaling pathways. Mol Cell Proteomics (2010) 0.82
How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome. Methods Mol Biol (2012) 0.79
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Sequences and topology: evolution of proteins and evolution of computational approaches. Curr Opin Struct Biol (2010) 0.77
Sequences and topology: from genome structure to protein structure. Curr Opin Struct Biol (2008) 0.76
Corrigendum: Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression. Nat Commun (2016) 0.76
Uncovering the interplay between DNA sequence preferences of transcription factors and nucleosomes. Cell Cycle (2012) 0.75
High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells. Cell (2020) 0.75
Networks for all. Genome Biol (2008) 0.75
The Human Cell Atlas: from vision to reality. Nature (2017) 0.75
Systemizing the structures and structuring the system. Expert Rev Proteomics (2010) 0.75
Immunology meets genomics. Brief Funct Genomics (2013) 0.75