Published in Mol Cell Proteomics on August 27, 2010
Basigin is a receptor essential for erythrocyte invasion by Plasmodium falciparum. Nature (2011) 3.83
Juno is the egg Izumo receptor and is essential for mammalian fertilization. Nature (2014) 2.42
Jamb and jamc are essential for vertebrate myocyte fusion. PLoS Biol (2011) 1.76
Replication and explorations of high-order epistasis using a large advanced intercross line pedigree. PLoS Genet (2011) 1.20
A library of functional recombinant cell-surface and secreted P. falciparum merozoite proteins. Mol Cell Proteomics (2013) 1.16
A benchmarked protein microarray-based platform for the identification of novel low-affinity extracellular protein interactions. Anal Biochem (2012) 1.04
Avidity-based extracellular interaction screening (AVEXIS) for the scalable detection of low-affinity extracellular receptor-ligand interactions. J Vis Exp (2012) 1.03
Defining the extracellular matrix using proteomics. Int J Exp Pathol (2013) 1.03
Identifying novel Plasmodium falciparum erythrocyte invasion receptors using systematic extracellular protein interaction screens. Cell Microbiol (2013) 1.01
Fundamentals of protein interaction network mapping. Mol Syst Biol (2015) 0.93
Specification of synaptic connectivity by cell surface interactions. Nat Rev Neurosci (2015) 0.89
A Library of Plasmodium vivax Recombinant Merozoite Proteins Reveals New Vaccine Candidates and Protein-Protein Interactions. PLoS Negl Trop Dis (2015) 0.86
Neurexins, neuroligins and LRRTMs: synaptic adhesion getting fishy. J Neurochem (2011) 0.85
The impact of gene expression regulation on evolution of extracellular signaling pathways. Mol Cell Proteomics (2010) 0.82
An expression system for screening of proteins for glycan and protein interactions. Anal Biochem (2011) 0.80
Development of an antigen microarray for high throughput monoclonal antibody selection. Biochem Biophys Res Commun (2014) 0.79
A Human Platelet Receptor Protein Microarray Identifies the High Affinity Immunoglobulin E Receptor Subunit α (FcεR1α) as an Activating Platelet Endothelium Aggregation Receptor 1 (PEAR1) Ligand. Mol Cell Proteomics (2015) 0.79
Genomic organisation, embryonic expression and biochemical interactions of the zebrafish junctional adhesion molecule family of receptors. PLoS One (2012) 0.78
A panel of recombinant monoclonal antibodies against zebrafish neural receptors and secreted proteins suitable for wholemount immunostaining. Biochem Biophys Res Commun (2014) 0.76
Metazoans evolved by taking domains from soluble proteins to expand intercellular communication network. Sci Rep (2015) 0.75
Bridging the gap between clinicians and systems biologists: from network biology to translational biomedical research. J Transl Med (2016) 0.75
Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47
Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res (2003) 103.76
Stages of embryonic development of the zebrafish. Dev Dyn (1995) 42.72
Network biology: understanding the cell's functional organization. Nat Rev Genet (2004) 36.62
OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res (2003) 33.03
Ensembl 2008. Nucleic Acids Res (2007) 20.67
Effective targeted gene 'knockdown' in zebrafish. Nat Genet (2000) 14.40
IntAct--open source resource for molecular interaction data. Nucleic Acids Res (2006) 13.82
Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature (2004) 13.27
High-resolution in situ hybridization to whole-mount zebrafish embryos. Nat Protoc (2008) 10.25
A genetic screen for mutations affecting embryogenesis in zebrafish. Development (1996) 7.12
An atlas of combinatorial transcriptional regulation in mouse and man. Cell (2010) 6.24
The Zebrafish Information Network (ZFIN): the zebrafish model organism database. Nucleic Acids Res (2003) 5.70
An experimentally derived confidence score for binary protein-protein interactions. Nat Methods (2008) 5.27
Dynamic complex formation during the yeast cell cycle. Science (2005) 5.11
Deleted in Colorectal Cancer (DCC) encodes a netrin receptor. Cell (1996) 4.63
Slit is the midline repellent for the robo receptor in Drosophila. Cell (1999) 4.29
Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans. Nat Biotechnol (2007) 3.65
Tissue specificity and the human protein interaction network. Mol Syst Biol (2009) 3.20
Protein family expansions and biological complexity. PLoS Comput Biol (2006) 2.69
Large-scale screening for novel low-affinity extracellular protein interactions. Genome Res (2008) 2.62
Target-selected inactivation of the zebrafish rag1 gene. Science (2002) 2.60
A vast repertoire of Dscam binding specificities arises from modular interactions of variable Ig domains. Cell (2007) 2.50
Homophilic adhesion of E-cadherin occurs by a co-operative two-step interaction of N-terminal domains. EMBO J (1996) 2.05
A coreceptor interaction between the CD28 and TNF receptor family members B and T lymphocyte attenuator and herpesvirus entry mediator. Proc Natl Acad Sci U S A (2005) 2.00
Zebrafish: genetic tools for studying vertebrate development. Trends Genet (1994) 1.85
Transient intercellular adhesion: the importance of weak protein-protein interactions. Trends Biochem Sci (1994) 1.82
Structural correlations in the family of small leucine-rich repeat proteins and proteoglycans. J Struct Biol (2006) 1.66
The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns. BMC Genomics (2007) 1.63
Membrane proteins with immunoglobulin-like domains--a master superfamily of interaction molecules. Semin Immunol (2003) 1.62
New insights into the diversity and function of neuronal immunoglobulin superfamily molecules. Annu Rev Neurosci (2003) 1.58
Revealing static and dynamic modular architecture of the eukaryotic protein interaction network. Mol Syst Biol (2007) 1.53
A cell surface interaction network of neural leucine-rich repeat receptors. Genome Biol (2009) 1.49
Novel specificities emerge by stepwise duplication of functional modules. Genome Res (2005) 1.47
Signal initiation in biological systems: the properties and detection of transient extracellular protein interactions. Mol Biosyst (2009) 1.36
The roles of nectins in cell adhesions: cooperation with other cell adhesion molecules and growth factor receptors. Curr Opin Cell Biol (2007) 1.36
AMIGO and friends: an emerging family of brain-enriched, neuronal growth modulating, type I transmembrane proteins with leucine-rich repeats (LRR) and cell adhesion molecule motifs. Brain Res Rev (2006) 1.34
Large scale genetics in a small vertebrate, the zebrafish. Int J Dev Biol (1996) 1.29
The synaptic glycoprotein neuroplastin is involved in long-term potentiation at hippocampal CA1 synapses. Proc Natl Acad Sci U S A (2000) 1.21
A positive feedback loop between Dumbfounded and Rolling pebbles leads to myotube enlargement in Drosophila. J Cell Biol (2005) 1.12
Multivalent recombinant proteins for probing functions of leucocyte surface proteins such as the CD200 receptor. Immunology (2005) 1.10
Unc5B interacts with FLRT3 and Rnd1 to modulate cell adhesion in Xenopus embryos. PLoS One (2009) 1.00
The first draft of the endostatin interaction network. J Biol Chem (2009) 0.98
Diglons are heterodimeric proteins composed of IgLON subunits, and Diglon-CO inhibits neurite outgrowth from cerebellar granule cells. J Cell Sci (2004) 0.97
Identification of leucocyte surface protein interactions by high-throughput screening with multivalent reagents. Immunology (2010) 0.93
New assay to detect low-affinity interactions and characterization of leukocyte receptors for collagen including leukocyte-associated Ig-like receptor-1 (LAIR-1). Eur J Immunol (2009) 0.92
Identification of LRRc17 as a negative regulator of receptor activator of NF-kappaB ligand (RANKL)-induced osteoclast differentiation. J Biol Chem (2009) 0.92
Molecular diversity in zebrafish NCAM family: three members with different VASE usage and distinct localization. Mol Cell Neurosci (2001) 0.89
Defining elastic fiber interactions by molecular fishing: an affinity purification and mass spectrometry approach. Mol Cell Proteomics (2009) 0.89
Isolation of receptor-ligand pairs by capture of long-lived multivalent interaction complexes. Proc Natl Acad Sci U S A (2002) 0.87
Cell growth selection system to detect extracellular and transmembrane protein interactions. Biochim Biophys Acta (2003) 0.86
The impact of gene expression regulation on evolution of extracellular signaling pathways. Mol Cell Proteomics (2010) 0.82
A new way to explore the world of extracellular protein interactions. Genome Res (2008) 0.81
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
High-resolution in situ hybridization to whole-mount zebrafish embryos. Nat Protoc (2008) 10.25
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet (2009) 6.02
Mind bomb is a ubiquitin ligase that is essential for efficient activation of Notch signaling by Delta. Dev Cell (2003) 4.30
Basigin is a receptor essential for erythrocyte invasion by Plasmodium falciparum. Nature (2011) 3.83
A HaemAtlas: characterizing gene expression in differentiated human blood cells. Blood (2009) 3.63
DBD--taxonomically broad transcription factor predictions: new content and functionality. Nucleic Acids Res (2007) 3.18
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates. Genome Res (2007) 3.11
The androgen receptor fuels prostate cancer by regulating central metabolism and biosynthesis. EMBO J (2011) 2.97
Functions and regulations of fibroblast growth factor signaling during embryonic development. Dev Biol (2005) 2.92
Spatial and temporal expression of the zebrafish genome by large-scale in situ hybridization screening. Methods Cell Biol (2004) 2.88
The cdx genes and retinoic acid control the positioning and segmentation of the zebrafish pronephros. PLoS Genet (2007) 2.85
RNA sequencing reveals two major classes of gene expression levels in metazoan cells. Mol Syst Biol (2011) 2.77
Large-scale screening for novel low-affinity extracellular protein interactions. Genome Res (2008) 2.62
CD200 and membrane protein interactions in the control of myeloid cells. Trends Immunol (2002) 2.45
Vesicular glutamate transporter 3 is required for synaptic transmission in zebrafish hair cells. J Neurosci (2008) 2.36
dead end, a novel vertebrate germ plasm component, is required for zebrafish primordial germ cell migration and survival. Curr Biol (2003) 2.18
New androgen receptor genomic targets show an interaction with the ETS1 transcription factor. EMBO Rep (2007) 2.17
CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex. PLoS Genet (2007) 2.12
Loss of gata1 but not gata2 converts erythropoiesis to myelopoiesis in zebrafish embryos. Dev Cell (2005) 2.12
The blood-stage malaria antigen PfRH5 is susceptible to vaccine-inducible cross-strain neutralizing antibody. Nat Commun (2011) 2.11
Molecular basis of cell migration in the fish lateral line: role of the chemokine receptor CXCR4 and of its ligand, SDF1. Proc Natl Acad Sci U S A (2002) 2.01
The molecular nature of the zebrafish tail organizer. Nature (2003) 1.96
Regulation of the lmo2 promoter during hematopoietic and vascular development in zebrafish. Dev Biol (2005) 1.93
Jamb and jamc are essential for vertebrate myocyte fusion. PLoS Biol (2011) 1.76
The parapineal mediates left-right asymmetry in the zebrafish diencephalon. Development (2003) 1.75
Stability and dynamics of polycomb target sites in Drosophila development. PLoS Genet (2008) 1.72
Directional asymmetry of the zebrafish epithalamus guides dorsoventral innervation of the midbrain target. Development (2005) 1.64
Production of maternal-zygotic mutant zebrafish by germ-line replacement. Proc Natl Acad Sci U S A (2002) 1.62
Setting the tempo in development: an investigation of the zebrafish somite clock mechanism. PLoS Biol (2007) 1.61
Sef is a feedback-induced antagonist of Ras/MAPK-mediated FGF signalling. Nat Cell Biol (2002) 1.61
Unexpected novel relational links uncovered by extensive developmental profiling of nuclear receptor expression. PLoS Genet (2007) 1.52
A cell surface interaction network of neural leucine-rich repeat receptors. Genome Biol (2009) 1.49
Otx5 regulates genes that show circadian expression in the zebrafish pineal complex. Nat Genet (2001) 1.49
FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database. Nucleic Acids Res (2009) 1.48
Transition from non-motile behaviour to directed migration during early PGC development in zebrafish. J Cell Sci (2005) 1.44
Enhancing blockade of Plasmodium falciparum erythrocyte invasion: assessing combinations of antibodies against PfRH5 and other merozoite antigens. PLoS Pathog (2012) 1.43
Fgf signalling controls the dorsoventral patterning of the zebrafish embryo. Development (2004) 1.41
A full-length recombinant Plasmodium falciparum PfRH5 protein induces inhibitory antibodies that are effective across common PfRH5 genetic variants. Vaccine (2012) 1.39
Human herpesvirus 8 K14 protein mimics CD200 in down-regulating macrophage activation through CD200 receptor. J Virol (2004) 1.38
Missense mutations in β-1,3-N-acetylglucosaminyltransferase 1 (B3GNT1) cause Walker-Warburg syndrome. Hum Mol Genet (2013) 1.36
RH5-Basigin interaction plays a major role in the host tropism of Plasmodium falciparum. Proc Natl Acad Sci U S A (2013) 1.35
Naturally acquired antibodies specific for Plasmodium falciparum reticulocyte-binding protein homologue 5 inhibit parasite growth and predict protection from malaria. J Infect Dis (2013) 1.30
Semaphorin-7A is an erythrocyte receptor for P. falciparum merozoite-specific TRAP homolog, MTRAP. PLoS Pathog (2012) 1.29
Neutralization of Plasmodium falciparum merozoites by antibodies against PfRH5. J Immunol (2013) 1.22
Drosophila awd, the homolog of human nm23, regulates FGF receptor levels and functions synergistically with shi/dynamin during tracheal development. Genes Dev (2003) 1.22
Large-scale mapping of mutations affecting zebrafish development. BMC Genomics (2007) 1.21
Noggin1 and Follistatin-like2 function redundantly to Chordin to antagonize BMP activity. Dev Biol (2006) 1.19
The zebrafish mutant gene chardonnay (cdy) encodes divalent metal transporter 1 (DMT1). Blood (2002) 1.16
A library of functional recombinant cell-surface and secreted P. falciparum merozoite proteins. Mol Cell Proteomics (2013) 1.16
A critical role for calponin 2 in vascular development. J Biol Chem (2005) 1.14
A rapid and scalable method for selecting recombinant mouse monoclonal antibodies. BMC Biol (2010) 1.13
Chance and necessity in chromosomal gene distributions. Trends Genet (2008) 1.13
Identification and mechanism of regulation of the zebrafish dorsal determinant. Proc Natl Acad Sci U S A (2011) 1.11
Regulation of zebrafish primordial germ cell migration by attraction towards an intermediate target. Development (2002) 1.08
Spatial and temporal expression patterns of selenoprotein genes during embryogenesis in zebrafish. Gene Expr Patterns (2003) 1.08
Amotl2 is essential for cell movements in zebrafish embryo and regulates c-Src translocation. Development (2007) 1.07
Biases in Drosophila melanogaster protein trap screens. BMC Genomics (2009) 1.07
Loss of selenoprotein N function causes disruption of muscle architecture in the zebrafish embryo. Exp Cell Res (2006) 1.05
Genome-wide screens for in vivo Tinman binding sites identify cardiac enhancers with diverse functional architectures. PLoS Genet (2013) 1.05
A benchmarked protein microarray-based platform for the identification of novel low-affinity extracellular protein interactions. Anal Biochem (2012) 1.04
Chemokine signaling guides axons within the retina in zebrafish. J Neurosci (2005) 1.03
Avidity-based extracellular interaction screening (AVEXIS) for the scalable detection of low-affinity extracellular receptor-ligand interactions. J Vis Exp (2012) 1.03
The deafness gene dfna5 is crucial for ugdh expression and HA production in the developing ear in zebrafish. Development (2004) 1.02
Zebrafish endoderm formation is regulated by combinatorial Nodal, FGF and BMP signalling. Development (2006) 1.02
Specificity of Notch pathway activation: twist controls the transcriptional output in adult muscle progenitors. Development (2010) 1.01
Identifying novel Plasmodium falciparum erythrocyte invasion receptors using systematic extracellular protein interaction screens. Cell Microbiol (2013) 1.01
Reverse genetic analysis of neurogenesis in the zebrafish retina. Dev Biol (2006) 1.01
Ptena and ptenb genes play distinct roles in zebrafish embryogenesis. Dev Dyn (2005) 1.00
Evolution and expression of D2 and D3 dopamine receptor genes in zebrafish. Dev Dyn (2004) 1.00
Interfacing systems biology and synthetic biology. Genome Biol (2009) 0.97