A nuclear-encoded sigma factor, Arabidopsis SIG6, recognizes sigma-70 type chloroplast promoters and regulates early chloroplast development in cotyledons.

PubWeight™: 1.41‹?› | Rank: Top 5%

🔗 View Article (PMID 15807777)

Published in Plant J on April 01, 2005

Authors

Yoko Ishizaki1, Yuichi Tsunoyama, Kyoko Hatano, Kohei Ando, Ko Kato, Atsuhiko Shinmyo, Maki Kobori, Go Takeba, Yoichi Nakahira, Takashi Shiina

Author Affiliations

1: Faculty of Human Environment, Kyoto Prefectural University, Shimogamo-nakaragi-cho, Sakyo-ku, Kyoto 606-8522, Japan.

Articles citing this

pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. Plant Cell (2005) 2.24

Transcription factors and regulation of photosynthetic and related metabolism under environmental stresses. Ann Bot (2008) 1.60

Stromal Hsp70 is important for protein translocation into pea and Arabidopsis chloroplasts. Plant Cell (2010) 1.41

The making of a chloroplast. EMBO J (2009) 1.34

Genetic dissection of chloroplast biogenesis and development: an overview. Plant Physiol (2011) 1.20

Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Proc Natl Acad Sci U S A (2011) 1.16

The pentratricopeptide repeat protein DELAYED GREENING1 is involved in the regulation of early chloroplast development and chloroplast gene expression in Arabidopsis. Plant Physiol (2008) 1.16

The SCABRA3 nuclear gene encodes the plastid RpoTp RNA polymerase, which is required for chloroplast biogenesis and mesophyll cell proliferation in Arabidopsis. Plant Physiol (2006) 1.16

Chloroplast biogenesis: control of plastid development, protein import, division and inheritance. Arabidopsis Book (2008) 1.15

Sigma factor phosphorylation in the photosynthetic control of photosystem stoichiometry. Proc Natl Acad Sci U S A (2010) 1.14

Plant sigma factors and their role in plastid transcription. Plant Cell Rep (2007) 1.12

Arabidopsis cotyledon-specific chloroplast biogenesis factor CYO1 is a protein disulfide isomerase. Plant Cell (2007) 1.11

Sigma factor-mediated plastid retrograde signals control nuclear gene expression. Plant J (2012) 1.07

Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells. Plant Cell Physiol (2009) 1.07

Nucleus-encoded plastid sigma factor SIG3 transcribes specifically the psbN gene in plastids. Nucleic Acids Res (2006) 1.06

Functional characterization of the GATA transcription factors GNC and CGA1 reveals their key role in chloroplast development, growth, and division in Arabidopsis. Plant Physiol (2012) 1.06

Dual temporal role of plastid sigma factor 6 in Arabidopsis development. Plant Physiol (2006) 1.04

AtSIG6, a plastid sigma factor from Arabidopsis, reveals functional impact of cpCK2 phosphorylation. Plant J (2010) 1.00

Mutations in a plastid-localized elongation factor G alter early stages of plastid development in Arabidopsis thaliana. BMC Plant Biol (2007) 0.99

The cytoskeleton and the peroxisomal-targeted snowy cotyledon3 protein are required for chloroplast development in Arabidopsis. Plant Cell (2010) 0.98

Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts. J Exp Bot (2011) 0.95

The Arabidopsis gene SIGMA FACTOR-BINDING PROTEIN 1 plays a role in the salicylate- and jasmonate-mediated defence responses. Plant Cell Environ (2010) 0.94

Intracompartmental and intercompartmental transcriptional networks coordinate the expression of genes for organellar functions. Plant Physiol (2011) 0.94

The photosynthesis affected mutant68-like protein evolved from a PSII assembly factor to mediate assembly of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. Plant Cell (2013) 0.93

Post-transcriptional control of chloroplast gene expression. Gene Regul Syst Bio (2009) 0.89

Plastid-to-nucleus retrograde signals are essential for the expression of nuclear starch biosynthesis genes during amyloplast differentiation in tobacco BY-2 cultured cells. Plant Physiol (2011) 0.88

Nuclear-encoded factors associated with the chloroplast transcription machinery of higher plants. Front Plant Sci (2014) 0.87

How to build functional thylakoid membranes: from plastid transcription to protein complex assembly. Planta (2012) 0.87

Phytochrome-induced SIG2 expression contributes to photoregulation of phytochrome signalling and photomorphogenesis in Arabidopsis thaliana. J Exp Bot (2013) 0.83

Subfunctionalization of sigma factors during the evolution of land plants based on mutant analysis of liverwort (Marchantia polymorpha L.) MpSIG1. Genome Biol Evol (2013) 0.83

A major role for the plastid-encoded RNA polymerase complex in the expression of plastid transfer RNAs. Plant Physiol (2013) 0.82

Silencing of NbBTF3 results in developmental defects and disturbed gene expression in chloroplasts and mitochondria of higher plants. Planta (2007) 0.81

AtSIG6 and other members of the sigma gene family jointly but differentially determine plastid target gene expression in Arabidopsis thaliana. Front Plant Sci (2014) 0.81

Seedling Lethal1, a pentatricopeptide repeat protein lacking an E/E+ or DYW domain in Arabidopsis, is involved in plastid gene expression and early chloroplast development. Plant Physiol (2013) 0.80

A phosphofructokinase B-type carbohydrate kinase family protein, NARA5, for massive expressions of plastid-encoded photosynthetic genes in Arabidopsis. Plant Physiol (2009) 0.80

Disruption of the psbA gene by the copy correction mechanism reveals that the expression of plastid-encoded genes is regulated by photosynthesis activity. J Plant Res (2007) 0.79

Young Seedling Stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings. Planta (2016) 0.78

SIG1, a sigma factor for the chloroplast RNA polymerase, differently associates with multiple DNA regions in the chloroplast chromosomes in vivo. Int J Mol Sci (2012) 0.78

New insights into the retrograde signaling pathway between the plastids and the nucleus. Plant Signal Behav (2010) 0.78

Phytochrome-dependent coordinate control of distinct aspects of nuclear and plastid gene expression during anterograde signaling and photomorphogenesis. Front Plant Sci (2014) 0.78

Inducible knockdown of MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE1 reveals roles of galactolipids in organelle differentiation in Arabidopsis cotyledons. Plant Physiol (2014) 0.76

A mutation in Arabidopsis seedling plastid development1 affects plastid differentiation in embryo-derived tissues during seedling growth. Plant Physiol (2010) 0.76

The novel protein DELAYED PALE-GREENING1 is required for early chloroplast biogenesis in Arabidopsis thaliana. Sci Rep (2016) 0.75

Overexpression of SlRBZ Results in Chlorosis and Dwarfism through Impairing Chlorophyll, Carotenoid, and Gibberellin Biosynthesis in Tomato. Front Plant Sci (2016) 0.75

Leaf Variegation of Thylakoid Formation1 Is Suppressed by Mutations of Specific σ-Factors in Arabidopsis. Plant Physiol (2015) 0.75

Genome-wide mapping of DNase I hypersensitive sites reveals chromatin accessibility changes in Arabidopsis euchromatin and heterochromatin regions under extended darkness. Sci Rep (2017) 0.75

New insights into the regulation of greening and carbon-nitrogen balance by sugar metabolism through a plastidic invertase. Plant Signal Behav (2010) 0.75

Articles by these authors

The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res (2008) 3.04

Evidence of en bloc duplication in vertebrate genomes. Nat Genet (2002) 2.30

Mutations in KaiA, a clock protein, extend the period of circadian rhythm in the cyanobacterium Synechococcus elongatus PCC 7942. Microbiology (2002) 1.83

Glycine residues in potassium channel-like selectivity filters determine potassium selectivity in four-loop-per-subunit HKT transporters from plants. Proc Natl Acad Sci U S A (2002) 1.77

Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome. Nucleic Acids Res (2005) 1.55

Direct comparison of autologous and allogeneic transplantation of iPSC-derived neural cells in the brain of a non-human primate. Stem Cell Reports (2013) 1.48

Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man. Immunol Rev (2002) 1.47

Arabidopsis CDKA;1, a cdc2 homologue, controls proliferation of generative cells in male gametogenesis. Plant J (2006) 1.46

Plastid RNA polymerases, promoters, and transcription regulators in higher plants. Int Rev Cytol (2005) 1.46

Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence. Proc Natl Acad Sci U S A (2003) 1.43

Rhesus macaque class I duplicon structures, organization, and evolution within the alpha block of the major histocompatibility complex. Mol Biol Evol (2004) 1.40

Phosphorylation of retinoblastoma-related protein by the cyclin D/cyclin-dependent kinase complex is activated at the G1/S-phase transition in tobacco. Plant Cell (2002) 1.35

Evidence for chloroplast control of external Ca2+-induced cytosolic Ca2+ transients and stomatal closure. Plant J (2007) 1.33

Chloroplast-mediated activation of plant immune signalling in Arabidopsis. Nat Commun (2012) 1.31

VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation. Plant J (2011) 1.27

Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5. Proc Natl Acad Sci U S A (2004) 1.25

Nomenclature report on the major histocompatibility complex genes and alleles of Great Ape, Old and New World monkey species. Immunogenetics (2012) 1.23

A third broad lineage of major histocompatibility complex (MHC) class I in teleost fish; MHC class II linkage and processed genes. Immunogenetics (2007) 1.13

The HSP terminator of Arabidopsis thaliana increases gene expression in plant cells. Plant Cell Physiol (2009) 1.12

The genomic sequence and comparative analysis of the rat major histocompatibility complex. Genome Res (2004) 1.11

Light and low-CO2-dependent LCIB-LCIC complex localization in the chloroplast supports the carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Cell Physiol (2010) 1.09

Genomic evolution of MHC class I region in primates. Proc Natl Acad Sci U S A (2005) 1.08

Novel nuclear-encoded proteins interacting with a plastid sigma factor, Sig1, in Arabidopsis thaliana. FEBS Lett (2002) 1.08

Effect of tourniquet application on deep vein thrombosis after total knee arthroplasty. Arch Orthop Trauma Surg (2006) 1.08

A novel system of polymorphic and diverse NK cell receptors in primates. PLoS Genet (2009) 1.06

Contribution of NAC transcription factors to plant adaptation to land. Science (2014) 1.06

A BAC-based contig map of the cynomolgus macaque (Macaca fascicularis) major histocompatibility complex genomic region. Genomics (2006) 1.06

Characterization of Arabidopsis ZIM, a member of a novel plant-specific GATA factor gene family. J Exp Bot (2004) 1.05

Blue light specific and differential expression of a plastid sigma factor, Sig5 in Arabidopsis thaliana. FEBS Lett (2002) 1.05

Genomic structure around joining segments and constant regions of swine T-cell receptor alpha/delta (TRA/TRD) locus. Immunology (2003) 1.03

Genome-wide analyses of early translational responses to elevated temperature and high salinity in Arabidopsis thaliana. Plant Cell Physiol (2010) 1.03

Organellar gene transcription and early seedling development are affected in the rpoT;2 mutant of Arabidopsis. Plant J (2004) 1.02

Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey. BMC Genomics (2006) 1.01

Contribution of mutation, recombination, and gene conversion to chicken MHC-B haplotype diversity. J Immunol (2008) 1.01

MIC and other NKG2D ligands: from none to too many. Curr Opin Immunol (2005) 1.00

An mt(+) gamete-specific nuclease that targets mt(-) chloroplasts during sexual reproduction in C. reinhardtii. Genes Dev (2002) 1.00

Eukaryotic-type plastid nucleoid protein pTAC3 is essential for transcription by the bacterial-type plastid RNA polymerase. Proc Natl Acad Sci U S A (2012) 0.98

Evolution of the proto-MHC ancestral region: more evidence for the plesiomorphic organisation of human chromosome 9q34 region. Immunogenetics (2003) 0.98

Vascular plant one-zinc-finger protein 1/2 transcription factors regulate abiotic and biotic stress responses in Arabidopsis. Plant J (2013) 0.97

Study of cynomolgus monkey (Macaca fascicularis) DRA polymorphism in four populations. Immunogenetics (2010) 0.97

An in vivo dual-reporter system of cyanobacteria using two railroad-worm luciferases with different color emissions. Plant Cell Physiol (2004) 0.97

Risk factors for the incidence and progression of radiographic osteoarthritis of the knee among Japanese. Int Orthop (2010) 0.96

The major histocompatibility complex (Mhc) class IIB region has greater genomic structural flexibility and diversity in the quail than the chicken. BMC Genomics (2006) 0.95

Recessive inheritance of population-specific intronic LINE-1 insertion causes a rotor syndrome phenotype. Hum Mutat (2015) 0.95

Transcriptional regulation of the circadian clock operon kaiBC by upstream regions in cyanobacteria. Mol Microbiol (2005) 0.95

Arabidopsis KRPs have distinct inhibitory activity toward cyclin D2-associated kinases, including plant-specific B-type cyclin-dependent kinase. FEBS Lett (2005) 0.95

Role of Arabidopsis CHL27 protein for photosynthesis, chloroplast development and gene expression profiling. Plant Cell Physiol (2008) 0.94

Hypoxia increases muscle hypertrophy induced by resistance training. Int J Sports Physiol Perform (2010) 0.91

Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin. Plant Cell Physiol (2007) 0.91

A role of the -35 element in the initiation of transcription at psbA promoter in tobacco plastids. Plant Cell Physiol (2003) 0.90

Functional recovery of the donor knee after autologous osteochondral transplantation for capitellar osteochondritis dissecans. Am J Sports Med (2010) 0.90

Phosphorylation of threonine 161 in plant cyclin-dependent kinase A is required for cell division by activation of its associated kinase. Plant J (2007) 0.90

MHC class I A loci polymorphism and diversity in three Southeast Asian populations of cynomolgus macaque. Immunogenetics (2009) 0.90

SYP71, a plant-specific Qc-SNARE protein, reveals dual localization to the plasma membrane and the endoplasmic reticulum in Arabidopsis. Cell Struct Funct (2008) 0.90

Transcriptional activation of tobacco E2F is repressed by co-transfection with the retinoblastoma-related protein: cyclin D expression overcomes this repressor activity. Plant Mol Biol (2005) 0.90

Nucleotide sequencing analysis of the swine 433-kb genomic segment located between the non-classical and classical SLA class I gene clusters. Immunogenetics (2003) 0.90

Arabidopsis RETINOBLASTOMA-RELATED PROTEIN 1 is involved in G1 phase cell cycle arrest caused by sucrose starvation. Plant Mol Biol (2007) 0.89

An isoform of Arabidopsis myosin XI interacts with small GTPases in its C-terminal tail region. J Exp Bot (2008) 0.89

Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate. J Mol Biol (2002) 0.89

Lumbar spondylolysis in juveniles from the same family: a report of three cases and a review of the literature. Case Rep Orthop (2013) 0.89

Effect of the sequence context of the AUG initiation codon on the rate of translation in dicotyledonous and monocotyledonous plant cells. J Biosci Bioeng (2009) 0.89

The 5'-untranslated region of the tobacco alcohol dehydrogenase gene functions as an effective translational enhancer in plant. J Biosci Bioeng (2004) 0.88

Functional characterization of ObgC in ribosome biogenesis during chloroplast development. Plant J (2012) 0.87

Chloroplast envelope localization of EDS5, an essential factor for salicylic acid biosynthesis in Arabidopsis thaliana. Plant Signal Behav (2013) 0.87

AtObgC, a plant ortholog of bacterial Obg, is a chloroplast-targeting GTPase essential for early embryogenesis. Plant Mol Biol (2009) 0.87

The 5'-untranslated region of the Oryza sativa alcohol dehydrogenase gene functions as a translational enhancer in monocotyledonous plant cells. J Biosci Bioeng (2008) 0.87

Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function in pre-60S ribosomal subunit maturation of mono- and dicotyledonous plants. J Biol Chem (2011) 0.87

TRIM39 and RNF39 are associated with Behçet's disease independently of HLA-B∗51 and -A∗26. Biochem Biophys Res Commun (2010) 0.86

Overexpression of NtHAL3 genes confers increased levels of proline biosynthesis and the enhancement of salt tolerance in cultured tobacco cells. J Exp Bot (2004) 0.86

Recurrent knee valgus deformity in Ellis-van Creveld syndrome. J Pediatr Orthop B (2012) 0.86

Enhanced repair of large osteochondral defects using a combination of artificial cartilage and basic fibroblast growth factor. Biomaterials (2005) 0.86

Application of high-resolution, massively parallel pyrosequencing for estimation of haplotypes and gene expression levels of swine leukocyte antigen (SLA) class I genes. Immunogenetics (2011) 0.85

Enhanced resistance to blast fungus and bacterial blight in transgenic rice constitutively expressing OsSBP, a rice homologue of mammalian selenium-binding proteins. Biosci Biotechnol Biochem (2004) 0.85

Lentivirus-mediated expression of angiostatin efficiently inhibits neovascularization in a murine proliferative retinopathy model. Gene Ther (2003) 0.85

Study of cynomolgus monkey (Macaca fascicularis) Mhc DRB gene polymorphism in four populations. Immunogenetics (2012) 0.85

Selective excitation of photosystems in chloroplasts inside plant leaves observed by near-infrared laser-based fluorescence spectral microscopy. Plant Cell Physiol (2009) 0.85

Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells. J Biosci Bioeng (2010) 0.85

A computational and experimental approach reveals that the 5'-proximal region of the 5'-UTR has a Cis-regulatory signature responsible for heat stress-regulated mRNA translation in Arabidopsis. Plant Cell Physiol (2013) 0.85

GM-CSF-independent CD1a expression in epidermal Langerhans cells: evidence from human CD1A genome-transgenic mice. J Invest Dermatol (2011) 0.84

Human osteosarcoma-derived cell lines produce soluble factor(s) that induces differentiation of blood monocytes to osteoclast-like cells. Int Immunopharmacol (2002) 0.84

N-glycosylation at noncanonical Asn-X-Cys sequences in plant cells. Glycobiology (2010) 0.84

Two novel nuclear genes, OsSIG5 and OsSIG6, encoding potential plastid sigma factors of RNA polymerase in rice: tissue-specific and light-responsive gene expression. Plant Cell Physiol (2006) 0.83

Strangulation necrosis of the intestine in a patient with giant polycystic kidney disease: a rare cause of acute abdomen. Int Surg (2008) 0.83