Published in Mol Microbiol on May 01, 2005
Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome. Nucleic Acids Res (2006) 2.67
Entropy-driven spatial organization of highly confined polymers: lessons for the bacterial chromosome. Proc Natl Acad Sci U S A (2006) 2.50
Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites. Genes Dev (2005) 2.06
Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts. Genome Res (2008) 2.00
Organization and segregation of bacterial chromosomes. Nat Rev Genet (2013) 1.76
Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis. J Mol Biol (2006) 1.73
Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA. Nucleic Acids Res (2010) 1.69
Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome. EMBO Rep (2006) 1.66
Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A (2010) 1.61
Differential effects and interactions of endogenous and horizontally acquired H-NS-like proteins in pathogenic Escherichia coli. Mol Microbiol (2009) 1.56
Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle. Proc Natl Acad Sci U S A (2011) 1.45
DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis. PLoS One (2016) 1.41
DNA looping-mediated repression by histone-like protein H-NS: specific requirement of Esigma70 as a cofactor for looping. Genes Dev (2005) 1.38
Active transcription of rRNA operons condenses the nucleoid in Escherichia coli: examining the effect of transcription on nucleoid structure in the absence of transertion. J Bacteriol (2009) 1.33
Chromosomal periodicity of evolutionarily conserved gene pairs. Proc Natl Acad Sci U S A (2007) 1.30
Regulation of bacterial virulence by Csr (Rsm) systems. Microbiol Mol Biol Rev (2015) 1.26
Virulence regulator EspR of Mycobacterium tuberculosis is a nucleoid-associated protein. PLoS Pathog (2012) 1.25
Entropy-based mechanism of ribosome-nucleoid segregation in E. coli cells. Biophys J (2011) 1.24
Protein-mediated molecular bridging: a key mechanism in biopolymer organization. Biophys J (2009) 1.23
Lsr2 of Mycobacterium tuberculosis is a DNA-bridging protein. Nucleic Acids Res (2008) 1.18
Gene silencing H-NS paralogue StpA forms a rigid protein filament along DNA that blocks DNA accessibility. Nucleic Acids Res (2011) 1.15
Lsr2 of Mycobacterium represents a novel class of H-NS-like proteins. J Bacteriol (2008) 1.12
The role of DNA-binding specificity in the evolution of bacterial regulatory networks. J Mol Biol (2008) 1.11
Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU. EMBO Rep (2009) 1.11
Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly. Proc Natl Acad Sci U S A (2007) 1.11
Mechanisms of transcription activation exerted by GadX and GadW at the gadA and gadBC gene promoters of the glutamate-based acid resistance system in Escherichia coli. J Bacteriol (2006) 1.10
Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription. Nucleic Acids Res (2013) 1.09
The Bacillus subtilis primosomal protein DnaD untwists supercoiled DNA. J Bacteriol (2006) 1.05
DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes. Nucleic Acids Res (2009) 1.04
Leucine-responsive regulatory protein (Lrp) acts as a virulence repressor in Salmonella enterica serovar Typhimurium. J Bacteriol (2008) 1.03
Caulobacter chromosome in vivo configuration matches model predictions for a supercoiled polymer in a cell-like confinement. Proc Natl Acad Sci U S A (2013) 1.03
Biochemical and structural characterization of Cren7, a novel chromatin protein conserved among Crenarchaea. Nucleic Acids Res (2007) 1.03
A novel nucleoid-associated protein of Mycobacterium tuberculosis is a sequence homolog of GroEL. Nucleic Acids Res (2009) 0.99
Time-dependent effects of transcription- and translation-halting drugs on the spatial distributions of the Escherichia coli chromosome and ribosomes. Mol Microbiol (2014) 0.97
Analysis of scanning force microscopy images of protein-induced DNA bending using simulations. Nucleic Acids Res (2005) 0.96
DNA binding mode transitions of Escherichia coli HU(alphabeta): evidence for formation of a bent DNA--protein complex on intact, linear duplex DNA. J Mol Biol (2008) 0.95
Physical organization of DNA by multiple non-specific DNA-binding modes of integration host factor (IHF). PLoS One (2012) 0.94
Sequence-specific recognition of DNA by the C-terminal domain of nucleoid-associated protein H-NS. J Biol Chem (2009) 0.94
Mycobacterium tuberculosis nucleoid-associated DNA-binding protein H-NS binds with high-affinity to the Holliday junction and inhibits strand exchange promoted by RecA protein. Nucleic Acids Res (2010) 0.93
The mycobacterial DNA-binding protein 1 (MDP1) from Mycobacterium bovis BCG influences various growth characteristics. BMC Microbiol (2008) 0.91
Modulation of Rho-dependent transcription termination in Escherichia coli by the H-NS family of proteins. J Bacteriol (2011) 0.90
Staphylococcal response to oxidative stress. Front Cell Infect Microbiol (2012) 0.90
Structural coupling between RNA polymerase composition and DNA supercoiling in coordinating transcription: a global role for the omega subunit? MBio (2011) 0.87
Bacterial protein HU dictates the morphology of DNA condensates produced by crowding agents and polyamines. Nucleic Acids Res (2007) 0.87
Mutation frequency and spectrum of mutations vary at different chromosomal positions of Pseudomonas putida. PLoS One (2012) 0.86
The structure of the oligomerization domain of Lsr2 from Mycobacterium tuberculosis reveals a mechanism for chromosome organization and protection. PLoS One (2012) 0.86
Crenarchaeal chromatin proteins Cren7 and Sul7 compact DNA by inducing rigid bends. Nucleic Acids Res (2012) 0.86
DNA protection by histone-like protein HU from the hyperthermophilic eubacterium Thermotoga maritima. Nucleic Acids Res (2008) 0.85
Cleavage of a model DNA replication fork by a methyl-specific endonuclease. Nucleic Acids Res (2011) 0.85
Chromosome demise in the wake of ligase-deficient replication. Mol Microbiol (2012) 0.85
Simulating the entropic collapse of coarse-grained chromosomes. Biophys J (2015) 0.84
Gene regulation by H-NS as a function of growth conditions depends on chromosomal position in Escherichia coli. G3 (Bethesda) (2015) 0.84
Untwisting of the DNA helix stimulates the endonuclease activity of Bacillus subtilis Nth at AP sites. Nucleic Acids Res (2011) 0.83
The spatial biology of transcription and translation in rapidly growing Escherichia coli. Front Microbiol (2015) 0.83
The nucleoid-associated protein Dan organizes chromosomal DNA through rigid nucleoprotein filament formation in E. coli during anoxia. Nucleic Acids Res (2012) 0.83
Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder. Proc Natl Acad Sci U S A (2009) 0.83
A model of H-NS mediated compaction of bacterial DNA. Biophys J (2013) 0.83
HupB, a nucleoid-associated protein of Mycobacterium tuberculosis, is modified by serine/threonine protein kinases in vivo. J Bacteriol (2014) 0.83
Analysis of the FnrL regulon in Rhodobacter capsulatus reveals limited regulon overlap with orthologues from Rhodobacter sphaeroides and Escherichia coli. BMC Genomics (2015) 0.83
Immunity of replicating Mu to self-integration: a novel mechanism employing MuB protein. Mob DNA (2010) 0.83
DNA clasping by mycobacterial HU: the C-terminal region of HupB mediates increased specificity of DNA binding. PLoS One (2010) 0.82
Dissociation and re-association of RNA polymerase with DNA during osmotic stress response in Escherichia coli. Nucleic Acids Res (2012) 0.82
Regulation of lipid biosynthesis, sliding motility, and biofilm formation by a membrane-anchored nucleoid-associated protein of Mycobacterium tuberculosis. J Bacteriol (2013) 0.82
Robust translation of the nucleoid protein Fis requires a remote upstream AU element and is enhanced by RNA secondary structure. J Bacteriol (2012) 0.81
StpA protein from Escherichia coli condenses supercoiled DNA in preference to linear DNA and protects it from digestion by DNase I and EcoKI. Nucleic Acids Res (2005) 0.81
A histone-like protein of Helicobacter pylori protects DNA from stress damage and aids host colonization. DNA Repair (Amst) (2012) 0.81
Time-dependent bending rigidity and helical twist of DNA by rearrangement of bound HU protein. Nucleic Acids Res (2013) 0.80
The Sac10b homolog in Methanococcus maripaludis binds DNA at specific sites. J Bacteriol (2009) 0.80
Crystal structure of the crenarchaeal conserved chromatin protein Cren7 and double-stranded DNA complex. Protein Sci (2010) 0.80
The chromosome copy number of the hyperthermophilic archaeon Thermococcus kodakarensis KOD1. Extremophiles (2015) 0.80
Direct regulation of topoisomerase activity by a nucleoid-associated protein. Nucleic Acids Res (2014) 0.80
A general approach to visualize protein binding and DNA conformation without protein labelling. Nat Commun (2016) 0.79
A high-throughput method to examine protein-nucleotide interactions identifies targets of the bacterial transcriptional regulatory protein fur. PLoS One (2014) 0.79
Structural change of DNA induced by nucleoid proteins: growth phase-specific Fis and stationary phase-specific Dps. Biophys J (2013) 0.78
Chromosomal "stress-response" domains govern the spatiotemporal expression of the bacterial virulence program. MBio (2015) 0.78
DNA condensation by TmHU studied by optical tweezers, AFM and molecular dynamics simulations. J Biol Phys (2010) 0.78
Integration host factor of Mycobacterium tuberculosis, mIHF, compacts DNA by a bending mechanism. PLoS One (2013) 0.78
Insights into the interaction between Cren7 and DNA: the role of loop β3-β4. Extremophiles (2015) 0.77
Time-resolved assembly of a nucleoprotein complex between Shigella flexneri virF promoter and its transcriptional repressor H-NS. Nucleic Acids Res (2014) 0.77
A novel DNA-binding protein plays an important role in Helicobacter pylori stress tolerance and survival in the host. J Bacteriol (2014) 0.77
Diverse architectural properties of Sso10a proteins: Evidence for a role in chromatin compaction and organization. Sci Rep (2016) 0.76
A biomechanical mechanism for initiating DNA packaging. Nucleic Acids Res (2014) 0.75
Regulation of Expression of Uropathogenic Escherichia coli Nonfimbrial Adhesin TosA by PapB Homolog TosR in Conjunction with H-NS and Lrp. Infect Immun (2016) 0.75
Single-molecule unzipping force analysis of HU-DNA complexes. Chembiochem (2013) 0.75
Retracted Molecular dissection of Mycobacterium tuberculosis integration host factor reveals novel insights into the mode of DNA binding and nucleoid compaction. J Biol Chem (2014) 0.75
HU histone-like DNA-binding protein from Thermus thermophilus: structural and evolutionary analyses. Extremophiles (2016) 0.75
Defining the Functionally Important Domain and Amino Acid Residues in Mycobacterium tuberculosis Integration Host Factor for Genome Stability, DNA Binding and Integrative Recombination. J Bacteriol (2017) 0.75