Published in Mol Phylogenet Evol on June 02, 2005
The octopus genome and the evolution of cephalopod neural and morphological novelties. Nature (2015) 1.39
Transcriptome-mining for single-copy nuclear markers in ferns. PLoS One (2013) 1.12
A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment. BMC Evol Biol (2012) 0.98
Tentacles of venom: toxic protein convergence in the Kingdom Animalia. J Mol Evol (2009) 0.96
The vertical lobe of cephalopods: an attractive brain structure for understanding the evolution of advanced learning and memory systems. J Comp Physiol A Neuroethol Sens Neural Behav Physiol (2015) 0.94
Phylogenetic representativeness: a new method for evaluating taxon sampling in evolutionary studies. BMC Bioinformatics (2010) 0.92
Expressed sequence tags as a tool for phylogenetic analysis of placental mammal evolution. PLoS One (2007) 0.79
Comparative visual ecology of cephalopods from different habitats. Proc Biol Sci (2016) 0.78
Phylogenetic tree reconstruction accuracy and model fit when proportions of variable sites change across the tree. Syst Biol (2010) 0.78
Adaptation of the Mitochondrial Genome in Cephalopods: Enhancing Proton Translocation Channels and the Subunit Interactions. PLoS One (2015) 0.75
The argonaut shell: gas-mediated buoyancy control in a pelagic octopus. Proc Biol Sci (2010) 0.75
Bayesian phylogeography finds its roots. PLoS Comput Biol (2009) 10.99
Bayesian inference of species trees from multilocus data. Mol Biol Evol (2009) 8.48
Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol Biol Evol (2005) 8.42
Rise and fall of the Beringian steppe bison. Science (2004) 7.91
Worldwide phylogeography of wild boar reveals multiple centers of pig domestication. Science (2005) 6.92
Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol Biol Evol (2005) 6.77
Ancient DNA. Proc Biol Sci (2005) 4.84
The molecular population genetics of HIV-1 group O. Genetics (2004) 4.53
Diverse plant and animal genetic records from Holocene and Pleistocene sediments. Science (2003) 4.48
Ancient DNA from European early neolithic farmers reveals their near eastern affinities. PLoS Biol (2010) 4.43
Early allelic selection in maize as revealed by ancient DNA. Science (2003) 4.38
Bayesian inference of population size history from multiple loci. BMC Evol Biol (2008) 4.23
Mapping the origins and expansion of the Indo-European language family. Science (2012) 3.76
Ancient DNA, pig domestication, and the spread of the Neolithic into Europe. Proc Natl Acad Sci U S A (2007) 3.45
Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions. Nucleic Acids Res (2007) 3.41
Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC Evol Biol (2008) 3.21
Accommodating the effect of ancient DNA damage on inferences of demographic histories. Mol Biol Evol (2008) 3.07
Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions. Nat Genet (2013) 3.03
Calibrated tree priors for relaxed phylogenetics and divergence time estimation. Syst Biol (2011) 2.94
A comprehensive regulatory framework to address the unmet need for new antibacterial treatments. Lancet Infect Dis (2013) 2.91
Time-dependent rates of molecular evolution. Mol Ecol (2011) 2.82
The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools. J Proteome Res (2007) 2.77
Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims. Microbiology (2004) 2.75
A Bayesian phylogenetic method to estimate unknown sequence ages. Mol Biol Evol (2010) 2.73
mtDNA variation predicts population size in humans and reveals a major Southern Asian chapter in human prehistory. Mol Biol Evol (2007) 2.67
A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens. Proc Biol Sci (2002) 2.63
Characterization of genetic miscoding lesions caused by postmortem damage. Am J Hum Genet (2002) 2.61
Species-specific responses of Late Quaternary megafauna to climate and humans. Nature (2011) 2.60
Phylogeny and ancient DNA of Sus provides insights into neolithic expansion in Island Southeast Asia and Oceania. Proc Natl Acad Sci U S A (2007) 2.60
Distribution patterns of postmortem damage in human mitochondrial DNA. Am J Hum Genet (2002) 2.46
Involvement of Lgl and Mahjong/VprBP in cell competition. PLoS Biol (2010) 2.45
Intracranially administered anti-Abeta antibodies reduce beta-amyloid deposition by mechanisms both independent of and associated with microglial activation. J Neurosci (2003) 2.44
Discovery of a novel ERK inhibitor with activity in models of acquired resistance to BRAF and MEK inhibitors. Cancer Discov (2013) 2.43
Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics. Mol Biol Evol (2011) 2.37
Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution. Mol Biol Evol (2007) 2.34
Guided tree topology proposals for Bayesian phylogenetic inference. Syst Biol (2011) 2.32
Joint inference of microsatellite mutation models, population history and genealogies using transdimensional Markov Chain Monte Carlo. Genetics (2011) 2.30
Evidence for time dependency of molecular rate estimates. Syst Biol (2007) 2.26
Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics. PLoS Comput Biol (2007) 2.25
Ancient DNA reveals key stages in the formation of central European mitochondrial genetic diversity. Science (2013) 2.23
Prospective evaluation of relatives for familial arrhythmogenic right ventricular cardiomyopathy/dysplasia reveals a need to broaden diagnostic criteria. J Am Coll Cardiol (2002) 2.22
Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation. Mol Biol Evol (2005) 2.22
Characterization of the interface between normal and transformed epithelial cells. Nat Cell Biol (2009) 2.21
Accurate model selection of relaxed molecular clocks in bayesian phylogenetics. Mol Biol Evol (2012) 2.13
Indo-European and Asian origins for Chilean and Pacific chickens revealed by mtDNA. Proc Natl Acad Sci U S A (2008) 2.13
Ancient DNA reveals late survival of mammoth and horse in interior Alaska. Proc Natl Acad Sci U S A (2009) 2.10
Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV). Proc Natl Acad Sci U S A (2012) 2.07
Using ancient DNA to study the origins and dispersal of ancestral Polynesian chickens across the Pacific. Proc Natl Acad Sci U S A (2014) 2.04
Was the Black Death caused by Yersinia pestis? Lancet Infect Dis (2004) 1.91
Estimating the basic reproductive number from viral sequence data. Mol Biol Evol (2011) 1.86
Extreme reversed sexual size dimorphism in the extinct New Zealand moa Dinornis. Nature (2003) 1.85
The genetic origins of the Andaman Islanders. Am J Hum Genet (2002) 1.82
Clinical expression of plakophilin-2 mutations in familial arrhythmogenic right ventricular cardiomyopathy. Circulation (2006) 1.82
Opiate therapy in chronic cough. Am J Respir Crit Care Med (2006) 1.81
Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics. Proc Natl Acad Sci U S A (2009) 1.79
A virus reveals population structure and recent demographic history of its carnivore host. Science (2006) 1.78
Long-term persistence of bacterial DNA. Curr Biol (2004) 1.70
Multiple geographic origins of commensalism and complex dispersal history of Black Rats. PLoS One (2011) 1.54
The origin, current diversity and future conservation of the modern lion (Panthera leo). Proc Biol Sci (2006) 1.52
Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena, Crocuta crocuta. Mol Ecol (2013) 1.47
Revising the recent evolutionary history of equids using ancient DNA. Proc Natl Acad Sci U S A (2009) 1.43
Evolution, systematics, and phylogeography of pleistocene horses in the new world: a molecular perspective. PLoS Biol (2005) 1.42
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model. J R Soc Interface (2014) 1.42
Evidence of the recombinant origin of a bat severe acute respiratory syndrome (SARS)-like coronavirus and its implications on the direct ancestor of SARS coronavirus. J Virol (2007) 1.39
Acne vulgaris in monozygotic twins. Australas J Dermatol (2006) 1.39
Phylogeography of lions (Panthera leo ssp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity. Mol Ecol (2009) 1.34
Bayesian coalescent inference of major human mitochondrial DNA haplogroup expansions in Africa. Proc Biol Sci (2009) 1.31
Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1. BMC Evol Biol (2006) 1.27
Evolution of the extinct Sabretooths and the American cheetah-like cat. Curr Biol (2005) 1.25
Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous. Mol Biol Evol (2004) 1.24
Foam nest components of the túngara frog: a cocktail of proteins conferring physical and biological resilience. Proc Biol Sci (2009) 1.22
Discovery of lost diversity of paternal horse lineages using ancient DNA. Nat Commun (2011) 1.20
Relict or colonizer? Extinction and range expansion of penguins in southern New Zealand. Proc Biol Sci (2009) 1.20
Magnetic resonance arthrography versus arthroscopy in the evaluation of articular hip pathology. Clin Orthop Relat Res (2004) 1.19
The FAR protein family of the nematode Caenorhabditis elegans. Differential lipid binding properties, structural characteristics, and developmental regulation. J Biol Chem (2002) 1.19
Influenza a virus migration and persistence in North American wild birds. PLoS Pathog (2013) 1.19
Ancient mitochondrial DNA from hair. Curr Biol (2004) 1.19
mtDNA from fossils reveals a radiation of Hawaiian geese recently derived from the Canada goose (Brantacanadensis). Proc Natl Acad Sci U S A (2002) 1.19
The negative transcriptional regulator NmrA discriminates between oxidized and reduced dinucleotides. J Biol Chem (2003) 1.19
Ancient DNA reveals prehistoric gene-flow from siberia in the complex human population history of North East Europe. PLoS Genet (2013) 1.18
Toxic epidermal necrolysis: review of pathogenesis and management. J Am Acad Dermatol (2011) 1.17
Substitutions in woolly mammoth hemoglobin confer biochemical properties adaptive for cold tolerance. Nat Genet (2010) 1.17
Molecular systematics of South American dolphins Sotalia: sister taxa determination and phylogenetic relationships, with insights into a multi-locus phylogeny of the Delphinidae. Mol Phylogenet Evol (2007) 1.17
Flight of the dodo. Science (2002) 1.17
Development and testing of new screening method for keratan sulfate in mucopolysaccharidosis IVA. Pediatr Res (2004) 1.16
Lack of chronological support for stepwise prehuman extinctions of Australian megafauna. Proc Natl Acad Sci U S A (2013) 1.15
Reply to Santiago-Rodriguez et al.: Was luxS really isolated from 25- to 40-million-year-old bacteria? FEMS Microbiol Lett (2014) 1.14
When are genetic methods useful for estimating contemporary abundance and detecting population trends? Mol Ecol Resour (2010) 1.13
Mitochondrial phylogenomics of modern and ancient equids. PLoS One (2013) 1.12
Bayesian selection of nucleotide substitution models and their site assignments. Mol Biol Evol (2012) 1.12
Phylogenetic and epidemic modeling of rapidly evolving infectious diseases. Infect Genet Evol (2011) 1.12
A stochastic simulator of birth-death master equations with application to phylodynamics. Mol Biol Evol (2013) 1.12
Mitochondrial markers for molecular identification of Aedes mosquitoes (Diptera: Culicidae) involved in transmission of arboviral disease in West Africa. J Med Entomol (2005) 1.12
How accurate and robust are the phylogenetic estimates of Austronesian language relationships? PLoS One (2010) 1.11
Multiplexed SNP typing of ancient DNA clarifies the origin of Andaman mtDNA haplogroups amongst South Asian tribal populations. PLoS One (2006) 1.11