Published in Trends Microbiol on June 01, 2005
Reductive genome evolution from the mother of Rickettsia. PLoS Genet (2007) 2.87
The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans. Proc Natl Acad Sci U S A (2009) 2.48
Small mobile sequences in bacteria display diverse structure/function motifs. Mol Microbiol (2007) 1.32
A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes. BMC Genomics (2010) 0.97
Signs of neutralization in a redundant gene involved in homologous recombination in Wolbachia endosymbionts. Genome Biol Evol (2014) 0.77
GTAG- and CGTC-tagged palindromic DNA repeats in prokaryotes. BMC Genomics (2013) 0.77
Complete genomic DNA sequence of the East Asian spotted fever disease agent Rickettsia japonica. PLoS One (2013) 0.76
The 1.2-megabase genome sequence of Mimivirus. Science (2004) 8.37
Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet (2006) 6.32
3DCoffee: combining protein sequences and structures within multiple sequence alignments. J Mol Biol (2004) 6.01
Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum. PLoS Genet (2008) 5.23
A giant virus in amoebae. Science (2003) 5.07
A genome-wide perspective of genetic variation in human metabolism. Nat Genet (2009) 5.00
Single mimivirus particles intercepted and imaged with an X-ray laser. Nature (2011) 4.63
Comparative analysis of Acinetobacters: three genomes for three lifestyles. PLoS One (2008) 3.94
BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol (2010) 3.35
Characterization of the naturally occurring oxacillinase of Acinetobacter baumannii. Antimicrob Agents Chemother (2005) 3.25
Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science (2013) 2.98
The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. PLoS Biol (2005) 2.88
Reductive genome evolution from the mother of Rickettsia. PLoS Genet (2007) 2.87
Genotyping, Orientalis-like Yersinia pestis, and plague pandemics. Emerg Infect Dis (2004) 2.76
A holistic approach to marine eco-systems biology. PLoS Biol (2011) 2.71
Discovery of sexual dimorphisms in metabolic and genetic biomarkers. PLoS Genet (2011) 2.68
3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment. Nucleic Acids Res (2004) 2.50
The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell (2010) 2.47
Novel biomarkers for pre-diabetes identified by metabolomics. Mol Syst Biol (2012) 2.39
Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. PLoS Genet (2006) 2.35
Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci U S A (2011) 2.34
Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature (2013) 2.26
Genome-based design of a cell-free culture medium for Tropheryma whipplei. Lancet (2003) 2.14
The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii. PLoS Genet (2008) 2.10
Taxonomic distribution of large DNA viruses in the sea. Genome Biol (2008) 2.04
Mimivirus and the emerging concept of "giant" virus. Virus Res (2006) 1.98
Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci U S A (2014) 1.95
CaspR: a web server for automated molecular replacement using homology modelling. Nucleic Acids Res (2004) 1.91
A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection. PLoS Genet (2011) 1.83
Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome. Genome Res (2003) 1.80
Marine mimivirus relatives are probably large algal viruses. Virol J (2008) 1.80
Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products. J Virol (2006) 1.76
Bioinformatics analysis of targeted metabolomics--uncovering old and new tales of diabetic mice under medication. Endocrinology (2008) 1.75
Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria. PLoS Genet (2007) 1.74
Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome. Genome Res (2007) 1.73
Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets. J Struct Funct Genomics (2003) 1.70
mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus. Genome Res (2010) 1.67
Genomic correlates of hyperthermostability, an update. J Biol Chem (2003) 1.62
The dynamic range of the human metabolome revealed by challenges. FASEB J (2012) 1.61
Differences between human plasma and serum metabolite profiles. PLoS One (2011) 1.61
Mimivirus relatives in the Sargasso sea. Virol J (2005) 1.55
Phydbac "Gene Function Predictor": a gene annotation tool based on genomic context analysis. BMC Bioinformatics (2005) 1.54
The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'. Genome Res (2009) 1.53
Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data. BMC Syst Biol (2011) 1.52
The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol (2012) 1.49
Molecular evolution of rickettsia surface antigens: evidence of positive selection. Mol Biol Evol (2005) 1.49
Metabolomic markers reveal novel pathways of ageing and early development in human populations. Int J Epidemiol (2013) 1.48
Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis. Nucleic Acids Res (2004) 1.47
Set1 is required for meiotic S-phase onset, double-strand break formation and middle gene expression. EMBO J (2004) 1.46
Use of highly variable intergenic spacer sequences for multispacer typing of Rickettsia conorii strains. J Clin Microbiol (2004) 1.45
Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus. Genome Res (2009) 1.44
Biomarkers for type 2 diabetes and impaired fasting glucose using a nontargeted metabolomics approach. Diabetes (2013) 1.44
Mouse phenotyping. Methods (2010) 1.43
Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information. PLoS Genet (2012) 1.41
Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes. Proc Natl Acad Sci U S A (2005) 1.40
Metabolic profiling reveals distinct variations linked to nicotine consumption in humans--first results from the KORA study. PLoS One (2008) 1.40
Phylogenetic classification of Bartonella species by comparing groEL sequences. Int J Syst Evol Microbiol (2002) 1.39
metaP-server: a web-based metabolomics data analysis tool. J Biomed Biotechnol (2010) 1.38
Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Environ Microbiol (2013) 1.35
Human serum metabolic profiles are age dependent. Aging Cell (2012) 1.34
Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes. Proc Natl Acad Sci U S A (2013) 1.32
Brucella microti: the genome sequence of an emerging pathogen. BMC Genomics (2009) 1.31
Mimivirus and Mimiviridae: giant viruses with an increasing number of potential hosts, including corals and sponges. J Invertebr Pathol (2009) 1.29
Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering. Opt Express (2011) 1.27
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. ISME J (2013) 1.26
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events. Nucleic Acids Res (2004) 1.24
Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses. BMC Genomics (2007) 1.23
Structure and evolution of the Ivy protein family, unexpected lysozyme inhibitors in Gram-negative bacteria. Proc Natl Acad Sci U S A (2007) 1.23
Epigenetics meets metabolomics: an epigenome-wide association study with blood serum metabolic traits. Hum Mol Genet (2013) 1.23
Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell. Genome Biol (2009) 1.22
Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing. Virol J (2011) 1.20
MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res (2010) 1.19
High TCR diversity ensures optimal function and homeostasis of Foxp3+ regulatory T cells. Eur J Immunol (2011) 1.19
Heart-specific genes revealed by expressed sequence tag (EST) sampling. Genome Biol (2002) 1.18
Questionnaire-based self-reported nutrition habits associate with serum metabolism as revealed by quantitative targeted metabolomics. Eur J Epidemiol (2010) 1.17
Identification of two putative rickettsial adhesins by proteomic analysis. Res Microbiol (2006) 1.16
Ten good reasons not to exclude giruses from the evolutionary picture. Nat Rev Microbiol (2009) 1.15