Published in PLoS Biol on October 18, 2011
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How diffusivity, thermocline and incident light intensity modulate the dynamics of deep chlorophyll maximum in Tyrrhenian Sea. PLoS One (2015) 0.75
The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates. Sci Rep (2016) 0.75
Assessing Low-Intensity Relationships in Complex Networks. PLoS One (2016) 0.75
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Closing the gaps on the viral photosystem-I psaDCAB gene organization. Environ Microbiol (2015) 0.75
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells. Sci Rep (2017) 0.75
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages. ISME J (2015) 0.75
Airborne Microalgae: Insights, Opportunities, and Challenges. Appl Environ Microbiol (2016) 0.75
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New Paradigms to Help Solve the Global Aquaculture Disease Crisis. PLoS Pathog (2017) 0.75
Diversity, ecology and biogeochemistry of cyst-forming acantharia (radiolaria) in the oceans. PLoS One (2013) 0.75
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Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Sci Data (2017) 0.75
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Emergent biogeography of microbial communities in a model ocean. Science (2007) 4.03
Global biodiversity patterns of marine phytoplankton and zooplankton. Nature (2004) 4.00
Molecular eco-systems biology: towards an understanding of community function. Nat Rev Microbiol (2008) 3.95
Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. PLoS Biol (2006) 3.63
Marine microorganisms and global nutrient cycles. Nature (2005) 3.59
Photosynthesis genes in marine viruses yield proteins during host infection. Nature (2005) 2.99
Quantifying environmental adaptation of metabolic pathways in metagenomics. Proc Natl Acad Sci U S A (2009) 2.89
Viruses manipulate the marine environment. Nature (2009) 2.86
Patterns of diversity in marine phytoplankton. Science (2010) 2.70
Self-organization in cell biology: a brief history. Nat Rev Mol Cell Biol (2008) 2.13
On the role of the Agulhas system in ocean circulation and climate. Nature (2011) 1.99
Viral photosynthetic reaction center genes and transcripts in the marine environment. ISME J (2007) 1.84
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A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environ Microbiol Rep (2011) 1.64
Warming effects on marine microbial food web processes: how far can we go when it comes to predictions? Philos Trans R Soc Lond B Biol Sci (2010) 1.60
Fluid dynamical niches of phytoplankton types. Proc Natl Acad Sci U S A (2010) 1.55
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Self-organisation and forces in the microtubule cytoskeleton. Curr Opin Cell Biol (2003) 1.35
Microbial oceanography in a sea of opportunity. Nature (2009) 1.14
Global genetic resources. Marine biodiversity and gene patents. Science (2011) 1.03
Novel analysis of oceanic surface water metagenomes suggests importance of polyphosphate metabolism in oligotrophic environments. PLoS One (2011) 1.01
Redefining plant systems biology: from cell to ecosystem. Trends Plant Sci (2011) 1.00
Modeling selective pressures on phytoplankton in the global ocean. PLoS One (2010) 0.93
The challenges and scope of theoretical biology. J Theor Biol (2011) 0.89
Changing oceans. Introduction. Science (2010) 0.88
Microbial oceanography. Nature (2009) 0.82
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
A method and server for predicting damaging missense mutations. Nat Methods (2010) 78.53
Human non-synonymous SNPs: server and survey. Nucleic Acids Res (2002) 50.45
Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature (2002) 45.19
A human gut microbial gene catalogue established by metagenomic sequencing. Nature (2010) 43.63
Comparative metagenomics of microbial communities. Science (2005) 25.88
InterPro: the integrative protein signature database. Nucleic Acids Res (2008) 25.07
Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res (2002) 25.06
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res (2003) 24.72
Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature (2004) 24.40
Enterotypes of the human gut microbiome. Nature (2011) 24.36
Comparative assessment of large-scale data sets of protein-protein interactions. Nature (2002) 24.25
Proteome survey reveals modularity of the yeast cell machinery. Nature (2006) 20.77
STRING 8--a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res (2008) 20.62
The genome sequence of the malaria mosquito Anopheles gambiae. Science (2002) 20.36
SMART 4.0: towards genomic data integration. Nucleic Acids Res (2004) 19.37
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res (2010) 18.73
STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res (2012) 18.26
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature (2007) 18.04
InterPro, progress and status in 2005. Nucleic Acids Res (2005) 17.53
SMART 5: domains in the context of genomes and networks. Nucleic Acids Res (2006) 17.13
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics (2006) 14.96
Toward automatic reconstruction of a highly resolved tree of life. Science (2006) 14.96
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res (2011) 13.45
New developments in the InterPro database. Nucleic Acids Res (2007) 12.49
STRING 7--recent developments in the integration and prediction of protein interactions. Nucleic Acids Res (2006) 12.16
A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature (2012) 11.68
Mutations in PCSK9 cause autosomal dominant hypercholesterolemia. Nat Genet (2003) 11.67
The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science (2007) 11.15
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature (2004) 11.03
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res (2011) 10.82
Genome evolution in yeasts. Nature (2004) 10.50
STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res (2005) 10.44
The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science (2004) 9.97
SMART 6: recent updates and new developments. Nucleic Acids Res (2008) 9.80
STRING: a database of predicted functional associations between proteins. Nucleic Acids Res (2003) 9.45
Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science (2002) 9.43
Drug target identification using side-effect similarity. Science (2008) 9.24
SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res (2011) 9.15
Bioinformatics in the post-sequence era. Nat Genet (2003) 8.83
mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes. Genes Dev (2006) 8.78
The 1.2-megabase genome sequence of Mimivirus. Science (2004) 8.37
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res (2006) 8.36
Literature mining for the biologist: from information retrieval to biological discovery. Nat Rev Genet (2006) 8.23
Protein disorder prediction: implications for structural proteomics. Structure (2003) 7.93
Annotating genomes with massive-scale RNA sequencing. Genome Biol (2008) 7.73
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Alternative splicing and genome complexity. Nat Genet (2001) 7.30
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc Natl Acad Sci U S A (2002) 7.21
Systematic discovery of in vivo phosphorylation networks. Cell (2007) 6.94
Richness of human gut microbiome correlates with metabolic markers. Nature (2013) 6.93
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res (2003) 6.86
A side effect resource to capture phenotypic effects of drugs. Mol Syst Biol (2010) 6.75
The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature (2008) 6.70
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature (2008) 6.69
The ecoresponsive genome of Daphnia pulex. Science (2011) 6.55
The genome of the model beetle and pest Tribolium castaneum. Nature (2008) 6.50
Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet (2006) 6.32
Phylogenomics revives traditional views on deep animal relationships. Curr Biol (2009) 5.89
Association of genes to genetically inherited diseases using data mining. Nat Genet (2002) 5.78
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (2010) 5.56
Immunity-related genes and gene families in Anopheles gambiae. Science (2002) 5.47
Microbial co-occurrence relationships in the human microbiome. PLoS Comput Biol (2012) 5.35
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotechnol (2008) 5.19
Dynamic complex formation during the yeast cell cycle. Science (2005) 5.11
A giant virus in amoebae. Science (2003) 5.07
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature (2006) 5.06
Modeling gene and genome duplications in eukaryotes. Proc Natl Acad Sci U S A (2005) 5.00
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94
STITCH: interaction networks of chemicals and proteins. Nucleic Acids Res (2007) 4.88
Genomes in flux: the evolution of archaeal and proteobacterial gene content. Genome Res (2002) 4.85
eggNOG: automated construction and annotation of orthologous groups of genes. Nucleic Acids Res (2007) 4.84
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Transcriptome complexity in a genome-reduced bacterium. Science (2009) 4.64
Single mimivirus particles intercepted and imaged with an X-ray laser. Nature (2011) 4.63
Duplication and divergence: the evolution of new genes and old ideas. Annu Rev Genet (2004) 4.63