Published in Cytokine on August 07, 2005
The role of inflammatory and anti-inflammatory cytokines in the pathogenesis of osteoarthritis. Mediators Inflamm (2014) 1.76
Activation of interleukin-1 signaling cascades in normal and osteoarthritic articular cartilage. Am J Pathol (2007) 1.28
Analysing the role of endogenous matrix molecules in the development of osteoarthritis. Int J Exp Pathol (2009) 1.13
Nitric oxide enhances aggrecan degradation by aggrecanase in response to TNF-alpha but not IL-1beta treatment at a post-transcriptional level in bovine cartilage explants. Osteoarthritis Cartilage (2007) 0.92
Regulation of chondrocyte gene expression by osteogenic protein-1. Arthritis Res Ther (2011) 0.90
IL-1beta regulates FHL2 and other cytoskeleton-related genes in human chondrocytes. Mol Med (2008) 0.84
Fibronectin III 13-14 domains induce joint damage via Toll-like receptor 4 activation and synergize with interleukin-1 and tumour necrosis factor. J Innate Immun (2011) 0.83
Dynamic compression alters NFkappaB activation and IkappaB-alpha expression in IL-1beta-stimulated chondrocyte/agarose constructs. Inflamm Res (2009) 0.82
Changes in Ultrastructure and Cytoskeletal Aspects of Human Normal and Osteoarthritic Chondrocytes Exposed to Interleukin-1β and Cyclical Hydrostatic Pressure. Int J Mol Sci (2015) 0.82
Chlorogenic acid suppresses interleukin-1β-induced inflammatory mediators in human chondrocytes. Int J Clin Exp Pathol (2014) 0.79
Differential response of chondrocytes and chondrogenic-induced mesenchymal stem cells to C1-OH tributanoylated N-acetylhexosamines. PLoS One (2013) 0.78
Rapamycin Maintains the Chondrocytic Phenotype and Interferes with Inflammatory Cytokine Induced Processes. Int J Mol Sci (2017) 0.75
Protective effect of Shenmai injection on knee articular cartilage of osteoarthritic rabbits and IL-1β-stimulated human chondrocytes. Exp Ther Med (2017) 0.75
ProMiner: rule-based protein and gene entity recognition. BMC Bioinformatics (2005) 6.12
RelEx--relation extraction using dependency parse trees. Bioinformatics (2006) 4.81
High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA (2008) 3.13
A simple approach for protein name identification: prospects and limits. BMC Bioinformatics (2005) 3.12
Playing biology's name game: identifying protein names in scientific text. Pac Symp Biocomput (2003) 3.03
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life. Nucleic Acids Res (2009) 2.26
ARTS: accurate recognition of transcription starts in human. Bioinformatics (2006) 2.25
Large-scale gene expression profiling reveals major pathogenetic pathways of cartilage degeneration in osteoarthritis. Arthritis Rheum (2006) 2.13
Co-clustering of biological networks and gene expression data. Bioinformatics (2002) 2.12
Controlled nanoscale doping of semiconductors via molecular monolayers. Nat Mater (2007) 2.06
Relative messenger RNA expression profiling of collagenases and aggrecanases in human articular chondrocytes in vivo and in vitro. Arthritis Rheum (2002) 1.97
Systematic analysis of viral and cellular microRNA targets in cells latently infected with human gamma-herpesviruses by RISC immunoprecipitation assay. Cell Host Microbe (2010) 1.91
Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res (2010) 1.80
Profile-profile alignment: a powerful tool for protein structure prediction. Pac Symp Biocomput (2003) 1.76
Mechanisms of disease: role of chondrocytes in the pathogenesis of osteoarthritis--structure, chaos and senescence. Nat Clin Pract Rheumatol (2007) 1.74
mGene: accurate SVM-based gene finding with an application to nematode genomes. Genome Res (2009) 1.67
Evolutionarily conserved herpesviral protein interaction networks. PLoS Pathog (2009) 1.67
Src activation by β-adrenoreceptors is a key switch for tumour metastasis. Nat Commun (2013) 1.62
Diameter-dependent electron mobility of InAs nanowires. Nano Lett (2009) 1.59
miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature. BMC Bioinformatics (2010) 1.57
Reliable gene signatures for microarray classification: assessment of stability and performance. Bioinformatics (2006) 1.54
Gene and protein nomenclature in public databases. BMC Bioinformatics (2006) 1.52
POIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors. Bioinformatics (2008) 1.51
Bootstrapping the interactome: unsupervised identification of protein complexes in yeast. J Comput Biol (2009) 1.51
Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome. PLoS One (2007) 1.42
Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo. PLoS Pathog (2012) 1.40
Inferring gene regulatory networks by ANOVA. Bioinformatics (2012) 1.39
Alternative splicing and protein structure evolution. Nucleic Acids Res (2007) 1.35
BioWeka--extending the Weka framework for bioinformatics. Bioinformatics (2007) 1.26
Reconstruction, modeling & analysis of Halobacterium salinarum R-1 metabolism. Mol Biosyst (2007) 1.25
Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution. Genome Res (2012) 1.24
Microarrays: how many do you need? J Comput Biol (2003) 1.19
New methods for joint analysis of biological networks and expression data. Bioinformatics (2004) 1.17
Arby: automatic protein structure prediction using profile-profile alignment and confidence measures. Bioinformatics (2004) 1.16
Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis. BMC Struct Biol (2009) 1.16
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems. Bioinformatics (2011) 1.15
Biosensor developments: application to prostate-specific antigen detection. Trends Biotechnol (2007) 1.15
Vorolign--fast structural alignment using Voronoi contacts. Bioinformatics (2007) 1.14
The SARS-coronavirus-host interactome: identification of cyclophilins as target for pan-coronavirus inhibitors. PLoS Pathog (2011) 1.14
Efficient photoelectrochemical water splitting with ultrathin films of hematite on three-dimensional nanophotonic structures. Nano Lett (2014) 1.14
Formation and characterization of NixInAs/InAs nanowire heterostructures by solid source reaction. Nano Lett (2008) 1.12
SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles. Bioinformatics (2005) 1.11
Protein structure alignment considering phenotypic plasticity. Bioinformatics (2008) 1.09
Plasma microRNA profiles for bladder cancer detection. Urol Oncol (2012) 1.09
Correlated stage- and subfield-associated hippocampal gene expression patterns in experimental and human temporal lobe epilepsy. Eur J Neurosci (2003) 1.08
Photovoltaics: solar cells on curtains. Nat Mater (2008) 1.08
Contextual analysis of RNAi-based functional screens using interaction networks. Bioinformatics (2011) 1.07
Transcript-specific expression profiles derived from sequence-based analysis of standard microarrays. PLoS One (2009) 1.07
A scatter-based prototype framework and multi-class extension of support vector machines. PLoS One (2012) 1.07
Microarray analyses of transdifferentiated mesenchymal stem cells. J Cell Biochem (2008) 1.06
ProCope--protein complex prediction and evaluation. Bioinformatics (2008) 1.05
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts. Bioinformatics (2005) 1.05
Efficient photon capturing with ordered three-dimensional nanowell arrays. Nano Lett (2012) 1.05
Parallel array InAs nanowire transistors for mechanically bendable, ultrahigh frequency electronics. ACS Nano (2010) 1.04
mGene.web: a web service for accurate computational gene finding. Nucleic Acids Res (2009) 1.04
Monolayer resist for patterned contact printing of aligned nanowire arrays. J Am Chem Soc (2009) 1.02
Efficient light absorption with integrated nanopillar/nanowell arrays for three-dimensional thin-film photovoltaic applications. ACS Nano (2013) 0.99
MIRTFnet: analysis of miRNA regulated transcription factors. PLoS One (2011) 0.99
AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings. Bioinformatics (2007) 0.99
Real-time transcriptional profiling of cellular and viral gene expression during lytic cytomegalovirus infection. PLoS Pathog (2012) 0.98
Petri Nets with Fuzzy Logic (PNFL): reverse engineering and parametrization. PLoS One (2010) 0.98
A systematic analysis of host factors reveals a Med23-interferon-λ regulatory axis against herpes simplex virus type 1 replication. PLoS Pathog (2013) 0.98
Inferring topology from clustering coefficients in protein-protein interaction networks. BMC Bioinformatics (2006) 0.97
Identifying active transcription factors and kinases from expression data using pathway queries. Bioinformatics (2005) 0.96
Single InAs nanowire room-temperature near-infrared photodetectors. ACS Nano (2014) 0.95
ToPNet--an application for interactive analysis of expression data and biological networks. Bioinformatics (2004) 0.95
ProSAS: a database for analyzing alternative splicing in the context of protein structures. Nucleic Acids Res (2007) 0.95
Transferable self-welding silver nanowire network as high performance transparent flexible electrode. Nanotechnology (2013) 0.94
Low temperature growth of boron nitride nanotubes on substrates. Nano Lett (2005) 0.93
Factors influencing the efficiency of generating genetically engineered pigs by nuclear transfer: multi-factorial analysis of a large data set. BMC Biotechnol (2013) 0.93
Inverted nanocone-based thin film photovoltaics with omnidirectionally enhanced performance. ACS Nano (2014) 0.93
Large-scale integration of semiconductor nanowires for high-performance flexible electronics. ACS Nano (2012) 0.93
SOX gene expression in human osteoarthritic cartilage. Pathobiology (2008) 0.93
Mining RNA-seq data for infections and contaminations. PLoS One (2013) 0.93
Gene expression in chondrocytes assessed with use of microarrays. J Bone Joint Surg Am (2003) 0.92
Experiment and mathematical modeling of gene expression dynamics in a cell-free system. Integr Biol (Camb) (2012) 0.92
Shape-controlled synthesis of single-crystalline nanopillar arrays by template-assisted vapor-liquid-solid process. J Am Chem Soc (2010) 0.92
Colored Petri net modeling and simulation of signal transduction pathways. Metab Eng (2005) 0.91
Systems analysis of bioenergetics and growth of the extreme halophile Halobacterium salinarum. PLoS Comput Biol (2009) 0.91
Rigorous assessment of gene set enrichment tests. Bioinformatics (2012) 0.91
Metabolomic analysis reveals differences in umbilical vein plasma metabolites between normal and growth-restricted fetal pigs during late gestation. J Nutr (2012) 0.91
Recent advances in solar cells based on one-dimensional nanostructure arrays. Nanoscale (2012) 0.91
Recent advances in large-scale assembly of semiconducting inorganic nanowires and nanofibers for electronics, sensors and photovoltaics. Chem Soc Rev (2012) 0.90
Inactivation of intergenic enhancers by EBNA3A initiates and maintains polycomb signatures across a chromatin domain encoding CXCL10 and CXCL9. PLoS Pathog (2013) 0.90
Classification of ncRNAs using position and size information in deep sequencing data. Bioinformatics (2010) 0.89
A context-based approach to identify the most likely mapping for RNA-seq experiments. BMC Bioinformatics (2012) 0.88
PARma: identification of microRNA target sites in AGO-PAR-CLIP data. Genome Biol (2013) 0.88
Functional genomics of osteoarthritis: on the way to evaluate disease hypotheses. Clin Orthop Relat Res (2004) 0.88
Influence of degree correlations on network structure and stability in protein-protein interaction networks. BMC Bioinformatics (2007) 0.87
Self-gating effect induced large performance improvement of ZnO nanocomb gas sensors. ACS Nano (2013) 0.87
Toward the complete interactome. Nat Biotechnol (2006) 0.87
Identifying the topology of protein complexes from affinity purification assays. Bioinformatics (2009) 0.87
The recovery and persistence of salivary DNA on human skin. J Forensic Sci (2010) 0.86
Enhanced supercapacitance in anodic TiO2 nanotube films by hydrogen plasma treatment. Nanotechnology (2013) 0.86
FERN - a Java framework for stochastic simulation and evaluation of reaction networks. BMC Bioinformatics (2008) 0.86
Strong light absorption of self-organized 3-D nanospike arrays for photovoltaic applications. ACS Nano (2011) 0.86