Published in Curr Opin Microbiol on August 01, 2005
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A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella. Nucleic Acids Res (2010) 1.36
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An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6. BMC Genomics (2010) 1.08
Conflicts targeting epigenetic systems and their resolution by cell death: novel concepts for methyl-specific and other restriction systems. DNA Res (2010) 1.06
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High allelic diversity in the methyltransferase gene of a phase variable type III restriction-modification system has implications for the fitness of Haemophilus influenzae. Nucleic Acids Res (2006) 1.05
Novel non-specific DNA adenine methyltransferases. Nucleic Acids Res (2011) 1.04
Programmed protection of foreign DNA from restriction allows pathogenicity island exchange during pneumococcal transformation. PLoS Pathog (2013) 1.04
Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences. Nat Commun (2014) 0.99
Promiscuous restriction is a cellular defense strategy that confers fitness advantage to bacteria. Proc Natl Acad Sci U S A (2012) 0.99
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Archaeal extrachromosomal genetic elements. Microbiol Mol Biol Rev (2015) 0.94
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Identification of Cj1051c as a major determinant for the restriction barrier of Campylobacter jejuni strain NCTC11168. Appl Environ Microbiol (2012) 0.91
Roseophage RDJL Phi1, infecting the aerobic anoxygenic phototrophic bacterium Roseobacter denitrificans OCh114. Appl Environ Microbiol (2009) 0.91
Tuning the relative affinities for activating and repressing operators of a temporally regulated restriction-modification system. Nucleic Acids Res (2009) 0.88
Impact of target site distribution for Type I restriction enzymes on the evolution of methicillin-resistant Staphylococcus aureus (MRSA) populations. Nucleic Acids Res (2013) 0.88
Virulence reduction in bacteriophage resistant bacteria. Front Microbiol (2015) 0.87
Type III restriction endonuclease EcoP15I is a heterotrimeric complex containing one Res subunit with several DNA-binding regions and ATPase activity. Nucleic Acids Res (2011) 0.87
Prophage-mediated defence against viral attack and viral counter-defence. Nat Microbiol (2017) 0.87
The structure of the KlcA and ArdB proteins reveals a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro. Nucleic Acids Res (2009) 0.86
Harnessing CRISPR-Cas9 immunity for genetic engineering. Curr Opin Microbiol (2014) 0.86
Exploring the DNA mimicry of the Ocr protein of phage T7. Nucleic Acids Res (2012) 0.85
Identification of the het-r vegetative incompatibility gene of Podospora anserina as a member of the fast evolving HNWD gene family. Curr Genet (2009) 0.85
Two novel type II restriction-modification systems occupying genomically equivalent locations on the chromosomes of Listeria monocytogenes strains. Appl Environ Microbiol (2012) 0.85
Helicobacter pylori DprA alleviates restriction barrier for incoming DNA. Nucleic Acids Res (2013) 0.85
Dissection of the DNA mimicry of the bacteriophage T7 Ocr protein using chemical modification. J Mol Biol (2009) 0.84
Bacteriophage and their potential roles in the human oral cavity. J Oral Microbiol (2015) 0.84
In vivo mutational characterization of DndE involved in DNA phosphorothioate modification. PLoS One (2014) 0.84
An investigation of the structural requirements for ATP hydrolysis and DNA cleavage by the EcoKI Type I DNA restriction and modification enzyme. Nucleic Acids Res (2011) 0.83
Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes. BMC Genomics (2015) 0.83
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Restriction-modification systems and bacteriophage invasion: who wins? J Theor Biol (2010) 0.83
Characterization of eukaryotic DNA N(6)-methyladenine by a highly sensitive restriction enzyme-assisted sequencing. Nat Commun (2016) 0.83
Evolutionary Ecology of Prokaryotic Immune Mechanisms. Microbiol Mol Biol Rev (2016) 0.82
Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic Island. Front Microbiol (2016) 0.82
SMRT sequencing of the Campylobacter coli BfR-CA-9557 genome sequence reveals unique methylation motifs. BMC Genomics (2015) 0.82
The EcoKI type I restriction-modification system in Escherichia coli affects but is not an absolute barrier for conjugation. J Bacteriol (2014) 0.82
CRISPR-induced distributed immunity in microbial populations. PLoS One (2014) 0.82
Ecological basis for rational phage therapy. Acta Naturae (2010) 0.81
Battling Phages: How Bacteria Defend against Viral Attack. PLoS Pathog (2015) 0.81
CRISPR-Cas and Restriction-Modification Act Additively against Conjugative Antibiotic Resistance Plasmid Transfer in Enterococcus faecalis. mSphere (2016) 0.81
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Generation of a restriction minus enteropathogenic Escherichia coli E2348/69 strain that is efficiently transformed with large, low copy plasmids. BMC Microbiol (2008) 0.80
Analysis of the Campylobacter jejuni genome by SMRT DNA sequencing identifies restriction-modification motifs. PLoS One (2015) 0.79
Fusion of GFP to the M.EcoKI DNA methyltransferase produces a new probe of Type I DNA restriction and modification enzymes. Biochem Biophys Res Commun (2010) 0.79
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ArdA proteins from different mobile genetic elements can bind to the EcoKI Type I DNA methyltransferase of E. coli K12. Biochim Biophys Acta (2013) 0.79
Plasmid pEC156, a Naturally Occurring Escherichia coli Genetic Element That Carries Genes of the EcoVIII Restriction-Modification System, Is Mobilizable among Enterobacteria. PLoS One (2016) 0.79
Removal of a frameshift between the hsdM and hsdS genes of the EcoKI Type IA DNA restriction and modification system produces a new type of system and links the different families of Type I systems. Nucleic Acids Res (2012) 0.78
Resistance and tolerance to foreign elements by prokaryotic immune systems - curating the genome. Nat Rev Immunol (2015) 0.78
DTDP-rhamnosyl transferase RfbF, is a newfound receptor-related regulatory protein for phage phiYe-F10 specific for Yersinia enterocolitica serotype O:3. Sci Rep (2016) 0.77
Recognition and cleavage of 5-methylcytosine DNA by bacterial SRA-HNH proteins. Nucleic Acids Res (2015) 0.77
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Temporal dynamics of methyltransferase and restriction endonuclease accumulation in individual cells after introducing a restriction-modification system. Nucleic Acids Res (2015) 0.76
Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria. BMC Evol Biol (2017) 0.76
Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? mSystems (2016) 0.76
Cloning, crystallization and preliminary X-ray diffraction analysis of an intact DNA methyltransferase of a type I restriction-modification enzyme from Vibrio vulnificus. Acta Crystallogr F Struct Biol Commun (2014) 0.75
To Defend or Not To Defend: That's the Question. mSphere (2016) 0.75
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Anti-Restriction Protein, KlcAHS, Promotes Dissemination of Carbapenem Resistance. Front Cell Infect Microbiol (2017) 0.75
Premethylation of Foreign DNA Improves Integrative Transformation Efficiency in Synechocystis sp. Strain PCC 6803. Appl Environ Microbiol (2015) 0.75
Bacteria vs. Bacteriophages: Parallel Evolution of Immune Arsenals. Front Microbiol (2016) 0.75
The evolutionary pathway from a biologically inactive polypeptide sequence to a folded, active structural mimic of DNA. Nucleic Acids Res (2016) 0.75
Comparative Analysis of Ralstonia solanacearum Methylomes. Front Plant Sci (2017) 0.75
Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia. PLoS One (2017) 0.75
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res (2003) 7.56
The Scottish Structural Proteomics Facility: targets, methods and outputs. J Struct Funct Genomics (2010) 1.66
Highlights of the DNA cutters: a short history of the restriction enzymes. Nucleic Acids Res (2013) 1.60
Continuous assays for DNA translocation using fluorescent triplex dissociation: application to type I restriction endonucleases. J Mol Biol (2005) 1.55
Type I restriction enzymes and their relatives. Nucleic Acids Res (2013) 1.54
Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance. Nucleic Acids Res (2009) 1.38
The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein. Nucleic Acids Res (2008) 1.37
Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping. Proc Natl Acad Sci U S A (2007) 1.31
DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes. EMBO J (2007) 1.28
Super-resolution imaging of DNA labelled with intercalating dyes. Chemphyschem (2009) 1.23
Type III restriction-modification enzymes: a historical perspective. Nucleic Acids Res (2013) 1.18
Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexes. Nucleic Acids Res (2005) 1.17
Atomic force microscopy of the EcoKI Type I DNA restriction enzyme bound to DNA shows enzyme dimerization and DNA looping. Nucleic Acids Res (2009) 1.17
Structure and operation of the DNA-translocating type I DNA restriction enzymes. Genes Dev (2012) 1.13
High-precision FLIM-FRET in fixed and living cells reveals heterogeneity in a simple CFP-YFP fusion protein. Biophys Chem (2007) 1.08
2-Aminopurine flipped into the active site of the adenine-specific DNA methyltransferase M.TaqI: crystal structures and time-resolved fluorescence. J Am Chem Soc (2007) 1.06
Strong physical constraints on sequence-specific target location by proteins on DNA molecules. Nucleic Acids Res (2006) 1.06
DNA bending by M.EcoKI methyltransferase is coupled to nucleotide flipping. Nucleic Acids Res (2005) 1.05
Alleviation of restriction by DNA condensation and non-specific DNA binding ligands. Nucleic Acids Res (2004) 0.99
The Orf18 gene product from conjugative transposon Tn916 is an ArdA antirestriction protein that inhibits type I DNA restriction-modification systems. J Mol Biol (2008) 0.96
A mutational analysis of DNA mimicry by ocr, the gene 0.3 antirestriction protein of bacteriophage T7. Biochem Biophys Res Commun (2008) 0.95
Single-molecule imaging of Bacteroides fragilis AddAB reveals the highly processive translocation of a single motor helicase. Nucleic Acids Res (2010) 0.90
The kinetics of YOYO-1 intercalation into single molecules of double-stranded DNA. Biochem Biophys Res Commun (2010) 0.89
Impact of target site distribution for Type I restriction enzymes on the evolution of methicillin-resistant Staphylococcus aureus (MRSA) populations. Nucleic Acids Res (2013) 0.88
Mechanosensitive channels and bacterial cell wall integrity: does life end with a bang or a whimper? J R Soc Interface (2013) 0.88
Unusual structures are present in DNA fragments containing super-long Huntingtin CAG repeats. PLoS One (2011) 0.87
The structure of the KlcA and ArdB proteins reveals a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro. Nucleic Acids Res (2009) 0.86
A unique homologue of the eukaryotic protein-modifier ubiquitin present in the bacterium Bacteroides fragilis, a predominant resident of the human gastrointestinal tract. Microbiology (2011) 0.85
Exploring the DNA mimicry of the Ocr protein of phage T7. Nucleic Acids Res (2012) 0.85
Dissection of the DNA mimicry of the bacteriophage T7 Ocr protein using chemical modification. J Mol Biol (2009) 0.84
Use of time-resolved FRET to validate crystal structure of complement regulatory complex between C3b and factor H (N terminus). Protein Sci (2011) 0.84
An investigation of the structural requirements for ATP hydrolysis and DNA cleavage by the EcoKI Type I DNA restriction and modification enzyme. Nucleic Acids Res (2011) 0.83
Assembly of EcoKI DNA methyltransferase requires the C-terminal region of the HsdM modification subunit. Biophys Chem (2003) 0.82
Reeling in the bases. Nat Struct Mol Biol (2004) 0.81
Differential stabilization of reaction intermediates: specificity checkpoints for M.EcoRI revealed by transient fluorescence and fluorescence lifetime studies. Nucleic Acids Res (2008) 0.80
A small molecule that walks non-directionally along a track without external intervention. Angew Chem Int Ed Engl (2012) 0.79
Fusion of GFP to the M.EcoKI DNA methyltransferase produces a new probe of Type I DNA restriction and modification enzymes. Biochem Biophys Res Commun (2010) 0.79
Mutations of the domain forming the dimeric interface of the ArdA protein affect dimerization and antimodification activity but not antirestriction activity. FEBS J (2013) 0.79
A generic basis for some simple light-operated mechanical molecular machines. J Am Chem Soc (2004) 0.79
Removal of a frameshift between the hsdM and hsdS genes of the EcoKI Type IA DNA restriction and modification system produces a new type of system and links the different families of Type I systems. Nucleic Acids Res (2012) 0.78
Selective turn-on fluorescence detection of cyanide in water using hydrophobic CdSe quantum dots. Chem Commun (Camb) (2008) 0.77
Screening by imaging: scaling up single-DNA-molecule analysis with a novel parabolic VA-TIRF reflector and noise-reduction techniques. Phys Chem Chem Phys (2009) 0.77
Enzyme-promoted base flipping controls DNA methylation fidelity. Biochemistry (2013) 0.76
Restriction endonuclease TseI cleaves A:A and T:T mismatches in CAG and CTG repeats. Nucleic Acids Res (2013) 0.75
Using the fluorescence decay of 2-aminopurine to investigate conformational change in the recognition sequence of the EcoRV DNA-(adenine-N6)-methyltransferase on enzyme binding. Biophys Chem (2011) 0.75
DNA electrophoresis: historical and theoretical perspectives. Methods Mol Biol (2013) 0.75