PubRank

Kristof Engelen

Author PubWeight™ 38.78‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Using ribosomal protein genes as reference: a tale of caution. PLoS One 2008 2.06
2 Draft Genome Sequence of Lysobacter capsici AZ78, a Bacterium Antagonistic to Plant-Pathogenic Oomycetes. Genome Announc 2014 1.77
3 PKA and Sch9 control a molecular switch important for the proper adaptation to nutrient availability. Mol Microbiol 2005 1.69
4 Inferring transcriptional modules from ChIP-chip, motif and microarray data. Genome Biol 2006 1.64
5 INCLUSive: A web portal and service registry for microarray and regulatory sequence analysis. Nucleic Acids Res 2003 1.55
6 DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli. Genome Biol 2009 1.36
7 The effect of a sertoli cell-selective knockout of the androgen receptor on testicular gene expression in prepubertal mice. Mol Endocrinol 2005 1.34
8 Evaluation of time profile reconstruction from complex two-color microarray designs. BMC Bioinformatics 2008 1.27
9 Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar Typhimurium HilA regulatory protein, including hilA itself. J Bacteriol 2005 1.11
10 Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis. J Bacteriol 2007 1.11
11 Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli. Nucleic Acids Res 2010 1.03
12 COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia. Nucleic Acids Res 2013 1.02
13 Inferring the transcriptional network of Bacillus subtilis. Mol Biosyst 2009 1.01
14 Stress response regulators identified through genome-wide transcriptome analysis of the (p)ppGpp-dependent response in Rhizobium etli. Genome Biol 2011 0.97
15 Meta Analysis of Gene Expression Data within and Across Species. Curr Genomics 2008 0.95
16 Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array. BMC Genomics 2010 0.95
17 COMODO: an adaptive coclustering strategy to identify conserved coexpression modules between organisms. Nucleic Acids Res 2010 0.91
18 Phenotypical and molecular responses of Arabidopsis thaliana roots as a result of inoculation with the auxin-producing bacterium Azospirillum brasilense. New Phytol 2013 0.91
19 Genome-wide expression analysis reveals TORC1-dependent and -independent functions of Sch9. FEMS Yeast Res 2008 0.89
20 Discovering transcriptional modules from motif, chip-chip and microarray data. Pac Symp Biocomput 2005 0.87
21 Expression profiling to predict the clinical behaviour of ovarian cancer fails independent evaluation. BMC Cancer 2008 0.86
22 Characterization of the condensin component Cnap1 and protein kinase Melk as novel E2F target genes down-regulated by 1,25-dihydroxyvitamin D3. J Biol Chem 2005 0.86
23 Expression divergence between Escherichia coli and Salmonella enterica serovar Typhimurium reflects their lifestyles. Mol Biol Evol 2013 0.85
24 Canonical and non-canonical EcfG sigma factors control the general stress response in Rhizobium etli. Microbiologyopen 2013 0.85
25 DNA structural properties in the classification of genomic transcription regulation elements. Bioinform Biol Insights 2012 0.85
26 Transcriptome analysis of the rhizosphere bacterium Azospirillum brasilense reveals an extensive auxin response. Microb Ecol 2011 0.84
27 CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data. Bioinformatics 2007 0.83
28 The AI-2-dependent regulator LsrR has a limited regulon in Salmonella Typhimurium. Cell Res 2010 0.83
29 Joint mapping of genes and conditions via multidimensional unfolding analysis. BMC Bioinformatics 2007 0.83
30 1alpha,25-Dihydroxyvitamin D3-induced down-regulation of the checkpoint proteins, Chk1 and Claspin, is mediated by the pocket proteins p107 and p130. J Steroid Biochem Mol Biol 2006 0.80
31 Directed module detection in a large-scale expression compendium. Methods Mol Biol 2012 0.80
32 A comparative transcriptome analysis of Rhizobium etli bacteroids: specific gene expression during symbiotic nongrowth. Mol Plant Microbe Interact 2011 0.80
33 Query-based biclustering of gene expression data using Probabilistic Relational Models. BMC Bioinformatics 2011 0.80
34 The potential for pathogenicity was present in the ancestor of the Ascomycete subphylum Pezizomycotina. BMC Evol Biol 2010 0.79
35 MAGIC: access portal to a cross-platform gene expression compendium for maize. Bioinformatics 2014 0.78
36 The condition-dependent transcriptional network in Escherichia coli. Ann N Y Acad Sci 2009 0.77
37 Identifying differentially expressed genes in the absence of replication. Int J Bioinform Res Appl 2013 0.77
38 Microarray analysis of MCF-7 breast cancer cells treated with 1,25-dihydroxyvitamin D3 or a 17-methyl-D-ring analog. Anticancer Res 2009 0.75
39 ViTraM: visualization of transcriptional modules. Bioinformatics 2009 0.75
40 Comparative analysis of gene expression: uncovering expression conservation and divergence between Salmonella enterica serovar Typhimurium strains LT2 and 14028S. Methods Mol Biol 2015 0.75
41 A nonlinear mixed-effects model for estimating calibration intervals for unknown concentrations in two-color microarray data with spike-ins. Stat Appl Genet Mol Biol 2009 0.75