Published in Bioinformatics on September 13, 2005
MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics. BMC Bioinformatics (2015) 1.42
An evaluation of custom microarray applications: the oligonucleotide design challenge. Nucleic Acids Res (2009) 1.19
Efficient oligonucleotide probe selection for pan-genomic tiling arrays. BMC Bioinformatics (2009) 0.82
An empirical study of choosing efficient discriminative seeds for oligonucleotide design. BMC Genomics (2009) 0.82
A microarray for assessing transcription from pelagic marine microbial taxa. ISME J (2014) 0.79
BOND: Basic OligoNucleotide Design. BMC Bioinformatics (2013) 0.78
Improving probe set selection for microbial community analysis by leveraging taxonomic information of training sequences. BMC Bioinformatics (2011) 0.77
Innate immune homeostasis by the homeobox gene caudal and commensal-gut mutualism in Drosophila. Science (2008) 5.14
An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice. Gut (2013) 3.07
A computational framework for influenza antigenic cartography. PLoS Comput Biol (2010) 2.14
Metagenomic analysis of kimchi, a traditional Korean fermented food. Appl Environ Microbiol (2011) 2.08
Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing. ISME J (2009) 1.69
Avian-origin H3N2 canine influenza A viruses in Southern China. Infect Genet Evol (2010) 1.63
Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses. Appl Environ Microbiol (2011) 1.62
Metatranscriptome analysis of lactic acid bacteria during kimchi fermentation with genome-probing microarrays. Int J Food Microbiol (2009) 1.54
Amplification of uncultured single-stranded DNA viruses from rice paddy soil. Appl Environ Microbiol (2008) 1.53
Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria. Appl Environ Microbiol (2010) 1.53
Comparing microarrays and next-generation sequencing technologies for microbial ecology research. Trends Biotechnol (2010) 1.52
Development and evaluation of genome-probing microarrays for monitoring lactic acid bacteria. Appl Environ Microbiol (2005) 1.50
Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing. PLoS One (2011) 1.49
Genotypic diversity of H5N1 highly pathogenic avian influenza viruses. J Gen Virol (2008) 1.43
Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil. Appl Environ Microbiol (2011) 1.41
Complete genome sequence of Leuconostoc citreum KM20. J Bacteriol (2008) 1.35
Coverage evaluation of universal bacterial primers using the metagenomic datasets. BMC Microbiol (2012) 1.34
Analysis of kimchi microflora using denaturing gradient gel electrophoresis. Int J Food Microbiol (2005) 1.33
Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sediments. Appl Environ Microbiol (2011) 1.32
Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1. J Bacteriol (2011) 1.30
Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid-uranium waste. FEMS Microbiol Ecol (2005) 1.29
Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications. Appl Environ Microbiol (2006) 1.28
Diversity and abundance of single-stranded DNA viruses in human feces. Appl Environ Microbiol (2011) 1.27
Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments. Extremophiles (2008) 1.26
Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster. Appl Environ Microbiol (2008) 1.22
Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor. Environ Microbiol (2008) 1.22
Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH. J Bacteriol (2006) 1.22
Extent of antigenic cross-reactivity among highly pathogenic H5N1 influenza viruses. J Clin Microbiol (2011) 1.21
Concepts and applications for influenza antigenic cartography. Influenza Other Respir Viruses (2011) 1.19
Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil. Environ Microbiol (2012) 1.18
Hydrazine synthase, a unique phylomarker with which to study the presence and biodiversity of anammox bacteria. Appl Environ Microbiol (2011) 1.18
Alishewanella agri sp. nov., isolated from landfill soil. Int J Syst Evol Microbiol (2009) 1.17
Identification of an H6N6 swine influenza virus in southern China. Infect Genet Evol (2011) 1.16
Metagenomic characterization of airborne viral DNA diversity in the near-surface atmosphere. J Virol (2012) 1.15
Psychrobacter cibarius sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol (2005) 1.13
Alishewanella aestuarii sp. nov., isolated from tidal flat sediment, and emended description of the genus Alishewanella. Int J Syst Evol Microbiol (2009) 1.12
Alishewanella jeotgali sp. nov., isolated from traditional fermented food, and emended description of the genus Alishewanella. Int J Syst Evol Microbiol (2009) 1.10
Using sequence data to infer the antigenicity of influenza virus. MBio (2013) 1.10
Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people. J Microbiol (2008) 1.09
Influence of soil components on the biodegradation of benzene, toluene, ethylbenzene, and o-, m-, and p-xylenes by the newly isolated bacterium Pseudoxanthomonas spadix BD-a59. Appl Environ Microbiol (2008) 1.09
Paenibacillus kribbensis sp. nov. and Paenibacillus terrae sp. nov., bioflocculants for efficient harvesting of algal cells. Int J Syst Evol Microbiol (2003) 1.08
Nucleotide composition string selection in HIV-1 subtyping using whole genomes. Bioinformatics (2007) 1.08
Weissella koreensis sp. nov., isolated from kimchi. Int J Syst Evol Microbiol (2002) 1.07
Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int J Syst Evol Microbiol (2006) 1.05
Leifsonia gen. nov., a genus for 2,4-diaminobutyric acid-containing actinomycetes to accommodate "Corynebacterium aquaticum" Leifson 1962 and Clavibacter xyli subsp. cynodontis Davis et al. 1984. J Gen Appl Microbiol (1999) 1.05
Phylogenetic analysis using complete signature information of whole genomes and clustered Neighbour-Joining method. Int J Bioinform Res Appl (2006) 1.05
Bacillus marisflavi sp. nov. and Bacillus aquimaris sp. nov., isolated from sea water of a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol (2003) 1.04
CodonO: codon usage bias analysis within and across genomes. Nucleic Acids Res (2007) 1.04
Bacterial and fungal diversity in the traditional Chinese liquor fermentation process. Int J Food Microbiol (2011) 1.03
Bacterial community analysis during fermentation of ten representative kinds of kimchi with barcoded pyrosequencing. Food Microbiol (2011) 1.03
Kocuria atrinae sp. nov., isolated from traditional Korean fermented seafood. Int J Syst Evol Microbiol (2009) 1.02
Molecular basis for broad neuraminidase immunity: conserved epitopes in seasonal and pandemic H1N1 as well as H5N1 influenza viruses. J Virol (2013) 1.02
AntigenMap 3D: an online antigenic cartography resource. Bioinformatics (2012) 1.01
An integrated Korean biodiversity and genetic information retrieval system. BMC Bioinformatics (2008) 1.01
Leucobacter celer sp. nov., isolated from Korean fermented seafood. Int J Syst Evol Microbiol (2010) 1.01
Antigenic characterization of H3N2 influenza A viruses from Ohio agricultural fairs. J Virol (2013) 0.99
Glaciecola agarilytica sp. nov., an agar-digesting marine bacterium from the East Sea, Korea. Int J Syst Evol Microbiol (2007) 0.99
Characterization of a highly pathogenic avian influenza H5N1 virus sublineage in poultry seized at ports of entry into Vietnam. Virology (2009) 0.99
Metagenomic analysis of the viral communities in fermented foods. Appl Environ Microbiol (2010) 0.99
Reductive dehalogenation of brominated phenolic compounds by microorganisms associated with the marine sponge Aplysina aerophoba. Appl Environ Microbiol (2003) 0.99
Identifying antigenicity-associated sites in highly pathogenic H5N1 influenza virus hemagglutinin by using sparse learning. J Mol Biol (2012) 0.98
Jeotgalicoccus halotolerans gen. nov., sp. nov. and Jeotgalicoccus psychrophilus sp. nov., isolated from the traditional Korean fermented seafood jeotgal. Int J Syst Evol Microbiol (2003) 0.98
Transfer of Bacillus halodenitrificans Denariaz et al. 1989 to the genus Virgibacillus as Virgibacillus halodenitrificans comb. nov. Int J Syst Evol Microbiol (2004) 0.98
Strict vegetarian diet improves the risk factors associated with metabolic diseases by modulating gut microbiota and reducing intestinal inflammation. Environ Microbiol Rep (2013) 0.97
Core and periphery structures in protein interaction networks. BMC Bioinformatics (2009) 0.97
Description of Fimbriimonas ginsengisoli gen. nov., sp. nov. within the Fimbriimonadia class nov., of the phylum Armatimonadetes. Antonie Van Leeuwenhoek (2012) 0.95
Bacterial diversity of water and sediment in the Changjiang estuary and coastal area of the East China Sea. FEMS Microbiol Ecol (2009) 0.95
Kocuria salsicia sp. nov., isolated from salt-fermented seafood. Int J Syst Evol Microbiol (2010) 0.95
Responses of bacterial and fungal communities to an elevation gradient in a subtropical montane forest of China. Appl Microbiol Biotechnol (2012) 0.95
Detection and characterization of a dehalogenating microorganism by terminal restriction fragment length polymorphism fingerprinting of 16S rRNA in a sulfidogenic, 2-bromophenol-utilizing enrichment. Appl Environ Microbiol (2004) 0.94
Development of microbial genome-probing microarrays using digital multiple displacement amplification of uncultivated microbial single cells. Environ Sci Technol (2008) 0.93
Spatiotemporal structure of molecular evolution of H5N1 highly pathogenic avian influenza viruses in Vietnam. PLoS One (2010) 0.93
Kocuria koreensis sp. nov., isolated from fermented seafood. Int J Syst Evol Microbiol (2009) 0.93
Methyl coenzyme M reductase A (mcrA) gene-based investigation of methanogens in the mudflat sediments of Yangtze River estuary, China. Microb Ecol (2013) 0.93
Planococcus maritimus sp. nov., isolated from sea water of a tidal flat in Korea. Int J Syst Evol Microbiol (2003) 0.92
Blautia stercoris sp. nov., isolated from human faeces. Int J Syst Evol Microbiol (2011) 0.92
Sulfitobacter litoralis sp. nov., a marine bacterium isolated from the East Sea, Korea. Int J Syst Evol Microbiol (2007) 0.92
Pseudoalteromonas marina sp. nov., a marine bacterium isolated from tidal flats of the Yellow Sea, and reclassification of Pseudoalteromonas sagamiensis as Algicola sagamiensis comb. nov. Int J Syst Evol Microbiol (2007) 0.91
Blautia faecis sp. nov., isolated from human faeces. Int J Syst Evol Microbiol (2012) 0.91
Brachybacterium squillarum sp. nov., isolated from salt-fermented seafood. Int J Syst Evol Microbiol (2010) 0.91
Harvest of Scenedesmus sp. with bioflocculant and reuse of culture medium for subsequent high-density cultures. Bioresour Technol (2010) 0.91
Unexpected convergence of fungal and bacterial communities during fermentation of traditional Korean alcoholic beverages inoculated with various natural starters. Food Microbiol (2011) 0.91
Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment. J Microbiol (2008) 0.90
Pseudozyma jejuensis sp. nov., a novel cutinolytic ustilaginomycetous yeast species that is able to degrade plastic waste. FEMS Yeast Res (2007) 0.90
Marinobacterium maritimum sp. nov., a marine bacterium isolated from Arctic sediment. Int J Syst Evol Microbiol (2009) 0.90
Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus sediminis" AR2, from Svalbard in the Arctic Circle. J Bacteriol (2012) 0.90
Proposal of the genus Thermoactinomyces sensu stricto and three new genera, Laceyella, Thermoflavimicrobium and Seinonella, on the basis of phenotypic, phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol (2005) 0.90
Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus koreensis" AR1, from marine sediment. J Bacteriol (2012) 0.89
Genome sequence of Brachybacterium squillarum M-6-3(T), isolated from salt-fermented seafood. J Bacteriol (2011) 0.89
Erythrobacter flavus sp. nov., a slight halophile from the East Sea in Korea. Int J Syst Evol Microbiol (2003) 0.89
Determination of cyanobacterial diversity during algal blooms in Daechung Reservoir, Korea, on the basis of cpcBA intergenic spacer region analysis. Appl Environ Microbiol (2006) 0.89