Published in J Mol Evol on October 04, 2005
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The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa. Mol Biol Evol (2005) 1.66
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. Proc Natl Acad Sci U S A (2012) 1.60
Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales. Mol Biol Evol (2005) 1.50
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The shape of supertrees to come: tree shape related properties of fourteen supertree methods. Syst Biol (2005) 1.22
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Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication. Proc Natl Acad Sci U S A (2003) 1.13
Metazoan opsin evolution reveals a simple route to animal vision. Proc Natl Acad Sci U S A (2012) 1.13
Gene similarity networks provide tools for understanding eukaryote origins and evolution. Proc Natl Acad Sci U S A (2013) 1.12
Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes. J Virol (2005) 1.09
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Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1. J Virol (2004) 1.07
Evolutionary analyses of non-genealogical bonds produced by introgressive descent. Proc Natl Acad Sci U S A (2012) 1.07
Heterogeneous models place the root of the placental mammal phylogeny. Mol Biol Evol (2013) 1.05
Of clades and clans: terms for phylogenetic relationships in unrooted trees. Trends Ecol Evol (2007) 1.04
Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function. Proc Natl Acad Sci U S A (2010) 1.03
An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences. Gene (2002) 0.98
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Recurring cluster and operon assembly for Phenylacetate degradation genes. BMC Evol Biol (2009) 0.94
Evidence of positive Darwinian selection in Omp85, a highly conserved bacterial outer membrane protein essential for cell viability. J Mol Evol (2005) 0.94
The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods. BMC Evol Biol (2008) 0.93
Gene and genome trees conflict at many levels. Philos Trans R Soc Lond B Biol Sci (2009) 0.92
A pluralistic account of homology: adapting the models to the data. Mol Biol Evol (2013) 0.89
Evidence of positive Darwinian selection in putative meningococcal vaccine antigens. J Mol Evol (2005) 0.89
Translational selection frequently overcomes genetic drift in shaping synonymous codon usage patterns in vertebrates. Mol Biol Evol (2013) 0.89
The molecular phylogeny of a nematode-specific clade of heterotrimeric G-protein alpha-subunit genes. J Mol Evol (2006) 0.88
EGN: a wizard for construction of gene and genome similarity networks. BMC Evol Biol (2013) 0.87
Characterization of endospore-forming bacteria associated with entomopathogenic nematodes, Heterorhabditis spp., and description of Paenibacillus nematophilus sp. nov. Int J Syst Evol Microbiol (2003) 0.87
Molecular evidence for dim-light vision in the last common ancestor of the vertebrates. Curr Biol (2006) 0.86
New approaches for unravelling reassortment pathways. BMC Evol Biol (2013) 0.84
Trees from trees: construction of phylogenetic supertrees using clann. Methods Mol Biol (2009) 0.84
The human genome retains relics of its prokaryotic ancestry: human genes of archaebacterial and eubacterial origin exhibit remarkable differences. Genome Biol Evol (2011) 0.84
Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models. BMC Bioinformatics (2004) 0.82
Molecular phylogeny of the Drosophila tripunctata and closely related species groups (Diptera: Drosophilidae). Mol Phylogenet Evol (2009) 0.81
Analysis of gene expression in the bovine corpus luteum through generation and characterisation of 960 ESTs. Biochim Biophys Acta (2004) 0.79
On the desirability of models for inferring genome phylogenies. Trends Microbiol (2005) 0.78
Integration of two ancestral chaperone systems into one: the evolution of eukaryotic molecular chaperones in light of eukaryogenesis. Mol Biol Evol (2013) 0.78
Increased genome sampling reveals a dynamic relationship between gene duplicability and the structure of the primate protein-protein interaction network. Mol Biol Evol (2012) 0.78
Eukaryotic genes in Mycobacterium tuberculosis? Possible alternative explanations. Trends Genet (2003) 0.77
Adaptive evolution of the human fatty acid synthase gene: support for the cancer selection and fat utilization hypotheses? Gene (2005) 0.77
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