Published in Microbiology on October 01, 2005
Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. Appl Environ Microbiol (2007) 2.15
Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol (2009) 2.11
Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics (2006) 1.86
Plasmids and rickettsial evolution: insight from Rickettsia felis. PLoS One (2007) 1.85
A closer look at bacteroides: phylogenetic relationship and genomic implications of a life in the human gut. Microb Ecol (2011) 1.27
Mutational analysis of the ompA promoter from Flavobacterium johnsoniae. J Bacteriol (2007) 1.24
Comparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exterior. BMC Genomics (2011) 1.07
Pivotal role of the Francisella tularensis heat-shock sigma factor RpoH. Microbiology (2009) 0.97
Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae. BMC Genomics (2007) 0.92
Variation in genomic islands contribute to genome plasticity in Cupriavidus metallidurans. BMC Genomics (2012) 0.86
RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res (2007) 85.81
Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol (2012) 8.15
Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics (2004) 7.76
Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature (2010) 7.51
Prediction of lipoprotein signal peptides in Gram-negative bacteria. Protein Sci (2003) 6.85
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet (2008) 5.23
An Aboriginal Australian genome reveals separate human dispersals into Asia. Science (2011) 4.84
Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins. BMC Bioinformatics (2004) 4.44
The Genomic Standards Consortium. PLoS Biol (2011) 3.99
Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res (2003) 3.02
Comparison of 61 sequenced Escherichia coli genomes. Microb Ecol (2010) 2.96
Origin of replication in circular prokaryotic chromosomes. Environ Microbiol (2006) 2.55
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A (2012) 2.39
Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics (2006) 1.86
The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology. Mol Biosyst (2008) 1.79
The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri. PLoS One (2007) 1.78
The Salmonella enterica pan-genome. Microb Ecol (2011) 1.76
Analysis of intra-genomic GC content homogeneity within prokaryotes. BMC Genomics (2010) 1.71
LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium. Mol Microbiol (2012) 1.70
Genome Update: proteome comparisons. Microbiology (2005) 1.66
Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray. Genome Biol (2007) 1.63
Genomic taxonomy of Vibrios. BMC Evol Biol (2009) 1.62
CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data. Bioinformatics (2004) 1.62
Identification of genetic differences between two Campylobacter jejuni strains with different colonization potentials. Microbiology (2002) 1.56
Phage therapy reduces Campylobacter jejuni colonization in broilers. Vet Microbiol (2005) 1.54
Benchmarking of methods for genomic taxonomy. J Clin Microbiol (2014) 1.51
Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses. BMC Genomics (2006) 1.51
Genome Update: AT content in sequenced prokaryotic genomes. Microbiology (2004) 1.50
Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes. BMC Genomics (2008) 1.46
Microbial comparative pan-genomics using binomial mixture models. BMC Genomics (2009) 1.46
Global regulation of virulence and the stress response by CsrA in the highly adapted human gastric pathogen Helicobacter pylori. Mol Microbiol (2004) 1.45
Standard operating procedure for computing pangenome trees. Stand Genomic Sci (2010) 1.45
Genomic characterization of Campylobacter jejuni strain M1. PLoS One (2010) 1.44
Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes. BMC Genomics (2012) 1.43
MicroRNA expression profiles associated with pancreatic adenocarcinoma and ampullary adenocarcinoma. Mod Pathol (2012) 1.43
Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus. BMC Microbiol (2008) 1.40
The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571. BMC Genomics (2008) 1.32
An environmental signature for 323 microbial genomes based on codon adaptation indices. Genome Biol (2006) 1.28
A closer look at bacteroides: phylogenetic relationship and genomic implications of a life in the human gut. Microb Ecol (2011) 1.27
Insights from 20 years of bacterial genome sequencing. Funct Integr Genomics (2015) 1.27
RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box. J Mol Biol (2003) 1.25
Genomic variation in Salmonella enterica core genes for epidemiological typing. BMC Genomics (2012) 1.23
Genome update: DNA repeats in bacterial genomes. Microbiology (2004) 1.21
Investigations of oligonucleotide usage variance within and between prokaryotes. PLoS Comput Biol (2008) 1.18
Prognostic microRNAs in cancer tissue from patients operated for pancreatic cancer--five microRNAs in a prognostic index. World J Surg (2012) 1.14
The sigma54 regulon (sigmulon) of Pseudomonas putida. Environ Microbiol (2003) 1.14
On the origins of a Vibrio species. Microb Ecol (2010) 1.13
Identification of hyperinvasive Campylobacter jejuni strains isolated from poultry and human clinical sources. J Med Microbiol (2008) 1.12
GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes. Stand Genomic Sci (2009) 1.10
Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome. FEMS Microbiol Lett (2007) 1.09
Cytolethal distending toxin (CDT)-negative Campylobacter jejuni strains and anti-CDT neutralizing antibodies are induced during human infection but not during colonization in chickens. Infect Immun (2005) 1.08
Structure and genotypic plasticity of the Campylobacter fetus sap locus. Mol Microbiol (2003) 1.07
Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera. Microb Ecol (2011) 1.07
Design of a seven-genome Escherichia coli microarray for comparative genomic profiling. J Bacteriol (2006) 1.07
Improving comparability between microarray probe signals by thermodynamic intensity correction. Nucleic Acids Res (2007) 1.05
Chromatin architecture and gene expression in Escherichia coli. Genome Biol (2004) 1.05
The TNFalpha receptor TNFRSF1A and genes encoding the amiloride-sensitive sodium channel ENaC as modulators in cystic fibrosis. Hum Genet (2006) 1.05
From essential to persistent genes: a functional approach to constructing synthetic life. Trends Genet (2012) 1.04
Genome update: the 1000th genome--a cautionary tale. Microbiology (2010) 1.03
Genome update: distribution of two-component transduction systems in 250 bacterial genomes. Microbiology (2005) 1.02
Genome Update: annotation quality in sequenced microbial genomes. Microbiology (2004) 1.01
The microbiome of New World vultures. Nat Commun (2014) 0.98
A Helicobacter pylori restriction endonuclease-replacing gene, hrgA, is associated with gastric cancer in Asian strains. Cancer Res (2002) 0.98
Parallel genetic and phenotypic evolution of DNA superhelicity in experimental populations of Escherichia coli. Mol Biol Evol (2010) 0.98
Non-O1 Vibrio cholerae unlinked to cholera in Haiti. Proc Natl Acad Sci U S A (2012) 0.96
Defining the Pseudomonas genus: where do we draw the line with Azotobacter? Microb Ecol (2011) 0.96
Functional Associations by Response Overlap (FARO), a functional genomics approach matching gene expression phenotypes. PLoS One (2007) 0.95
Binding of Escherichia coli hemolysin and activation of the target cells is not receptor-dependent. J Biol Chem (2005) 0.93
Role of dprA in transformation of Campylobacter jejuni. FEMS Microbiol Lett (2005) 0.93
Strand misalignments lead to quasipalindrome correction. Trends Genet (2003) 0.92
Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae. BMC Genomics (2007) 0.92
Extracytoplasmic function sigma factors in Pseudomonas syringae. Trends Microbiol (2005) 0.91
Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering. BMC Genomics (2009) 0.91
The plasmid genome database. Microbiology (2003) 0.91
Microbial taxonomy in the post-genomic era: rebuilding from scratch? Arch Microbiol (2014) 0.90