Published in Microb Ecol on October 27, 2011
Correlation between body mass index and gut concentrations of Lactobacillus reuteri, Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli. Int J Obes (Lond) (2013) 1.24
Genomic variation in Salmonella enterica core genes for epidemiological typing. BMC Genomics (2012) 1.23
Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. BMC Genomics (2013) 1.11
Functional genomics of lactic acid bacteria: from food to health. Microb Cell Fact (2014) 1.06
Comparative functional genomics of Lactobacillus spp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment. J Bacteriol (2014) 1.02
Genomic overview and biological functions of exopolysaccharide biosynthesis in Bifidobacterium spp. Appl Environ Microbiol (2013) 1.01
Proteins of novel lactic acid bacteria from Apis mellifera mellifera: an insight into the production of known extra-cellular proteins during microbial stress. BMC Microbiol (2013) 1.01
Metagenomic analysis of a tropical composting operation at the são paulo zoo park reveals diversity of biomass degradation functions and organisms. PLoS One (2013) 0.99
Comparative genomic analysis of 45 type strains of the genus Bifidobacterium: a snapshot of its genetic diversity and evolution. PLoS One (2015) 0.97
Genome sequence and analysis of Lactobacillus helveticus. Front Microbiol (2013) 0.96
Comparative genome analysis of Lactobacillus rhamnosus clinical isolates from initial stages of dental pulp infection: identification of a new exopolysaccharide cluster. PLoS One (2014) 0.89
Comparative genomics analysis of Streptococcus isolates from the human small intestine reveals their adaptation to a highly dynamic ecosystem. PLoS One (2013) 0.87
Methods of combinatorial optimization to reveal factors affecting gene length. Bioinform Biol Insights (2012) 0.86
Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp. BMC Genomics (2015) 0.86
Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes. Microb Ecol (2015) 0.83
Impact of genomics on the field of probiotic research: historical perspectives to modern paradigms. Antonie Van Leeuwenhoek (2014) 0.82
Pan-genome analysis of human gastric pathogen H. pylori: comparative genomics and pathogenomics approaches to identify regions associated with pathogenicity and prediction of potential core therapeutic targets. Biomed Res Int (2015) 0.79
Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets. BMC Genomics (2016) 0.77
Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences. Front Microbiol (2016) 0.77
Comparative Genomics Revealed Genetic Diversity and Species/Strain-Level Differences in Carbohydrate Metabolism of Three Probiotic Bifidobacterial Species. Int J Genomics (2015) 0.76
Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? mSystems (2016) 0.76
Aggregation factor as an inhibitor of bacterial binding to gut mucosa. Microb Ecol (2014) 0.76
Genome analysis coupled with physiological studies reveals a diverse nitrogen metabolism in Methylocystis sp. strain SC2. PLoS One (2013) 0.76
Switches in Genomic GC Content Drive Shifts of Optimal Codons under Sustained Selection on Synonymous Sites. Genome Biol Evol (2017) 0.76
The Variable Regions of Lactobacillus rhamnosus Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires. Genome Biol Evol (2016) 0.75
Comparative analysis of predicted plastid-targeted proteomes of sequenced higher plant genomes. PLoS One (2014) 0.75
In vitro characteristics of Lactobacillus spp. strains isolated from the chicken digestive tract and their role in the inhibition of Campylobacter colonization. Microbiologyopen (2017) 0.75
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The COG database: an updated version includes eukaryotes. BMC Bioinformatics (2003) 60.98
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The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes. Stand Genomic Sci (2009) 5.50
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Lactic acid bacteria of foods and their current taxonomy. Int J Food Microbiol (1997) 3.05
Comparison of 61 sequenced Escherichia coli genomes. Microb Ecol (2010) 2.96
New insights in the molecular biology and physiology of Streptococcus thermophilus revealed by comparative genomics. FEMS Microbiol Rev (2005) 2.58
Taxonomy of Lactobacilli and Bifidobacteria. Curr Issues Intest Microbiol (2007) 2.36
New scientific paradigms for probiotics and prebiotics. J Clin Gastroenterol (2003) 1.88
The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology. Mol Biosyst (2008) 1.79
Genomic insights into bifidobacteria. Microbiol Mol Biol Rev (2010) 1.57
Genotypic and phenotypic characterization of Lactobacillus casei strains isolated from different ecological niches suggests frequent recombination and niche specificity. Microbiology (2007) 1.57
Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology (2006) 1.52
Standard operating procedure for computing pangenome trees. Stand Genomic Sci (2010) 1.45
Genomic characterization of Campylobacter jejuni strain M1. PLoS One (2010) 1.44
Comparative genomic analysis of pathogenic and probiotic Enterococcus faecalis isolates, and their transcriptional responses to growth in human urine. PLoS One (2010) 1.23
Development of a multilocus sequence typing method for analysis of Lactobacillus plantarum strains. Microbiology (2006) 1.22
Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing. Res Microbiol (2010) 1.21
The genus burkholderia: analysis of 56 genomic sequences. Genome Dyn (2009) 1.17
Lactobacillus phylogenomics--towards a reclassification of the genus. Int J Syst Evol Microbiol (2008) 1.14
On the origins of a Vibrio species. Microb Ecol (2010) 1.13
Genome update: the 1000th genome--a cautionary tale. Microbiology (2010) 1.03
Safety assessment of dairy microorganisms: Streptococcus thermophilus. Int J Food Microbiol (2007) 1.00
Genetic diversity in Italian Lactobacillus sanfranciscensis strains assessed by multilocus sequence typing and pulsed-field gel electrophoresis analyses. Microbiology (2010) 0.99
Influence of the dairy environment on gene expression and substrate utilization in lactic acid bacteria. J Nutr (2007) 0.87
Microcomputers and phylogenetic analysis. Science (1986) 0.84
RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res (2007) 85.81
Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol (2012) 8.15
The Genomic Standards Consortium. PLoS Biol (2011) 3.99
Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res (2003) 3.02
Comparison of 61 sequenced Escherichia coli genomes. Microb Ecol (2010) 2.96
Origin of replication in circular prokaryotic chromosomes. Environ Microbiol (2006) 2.55
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A (2012) 2.39
Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics (2006) 1.86
The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology. Mol Biosyst (2008) 1.79
The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri. PLoS One (2007) 1.78
The Salmonella enterica pan-genome. Microb Ecol (2011) 1.76
Analysis of intra-genomic GC content homogeneity within prokaryotes. BMC Genomics (2010) 1.71
LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium. Mol Microbiol (2012) 1.70
Genome Update: proteome comparisons. Microbiology (2005) 1.66
Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray. Genome Biol (2007) 1.63
CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data. Bioinformatics (2004) 1.62
Genomic taxonomy of Vibrios. BMC Evol Biol (2009) 1.62
Identification of genetic differences between two Campylobacter jejuni strains with different colonization potentials. Microbiology (2002) 1.56
Phage therapy reduces Campylobacter jejuni colonization in broilers. Vet Microbiol (2005) 1.54
Benchmarking of methods for genomic taxonomy. J Clin Microbiol (2014) 1.51
Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses. BMC Genomics (2006) 1.51
Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes. BMC Genomics (2008) 1.46
Microbial comparative pan-genomics using binomial mixture models. BMC Genomics (2009) 1.46
Global regulation of virulence and the stress response by CsrA in the highly adapted human gastric pathogen Helicobacter pylori. Mol Microbiol (2004) 1.45
Standard operating procedure for computing pangenome trees. Stand Genomic Sci (2010) 1.45
Genomic characterization of Campylobacter jejuni strain M1. PLoS One (2010) 1.44
Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes. BMC Genomics (2012) 1.43
Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus. BMC Microbiol (2008) 1.40
The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571. BMC Genomics (2008) 1.32
An environmental signature for 323 microbial genomes based on codon adaptation indices. Genome Biol (2006) 1.28
A closer look at bacteroides: phylogenetic relationship and genomic implications of a life in the human gut. Microb Ecol (2011) 1.27
Insights from 20 years of bacterial genome sequencing. Funct Integr Genomics (2015) 1.27
RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box. J Mol Biol (2003) 1.25
Genomic variation in Salmonella enterica core genes for epidemiological typing. BMC Genomics (2012) 1.23
Investigations of oligonucleotide usage variance within and between prokaryotes. PLoS Comput Biol (2008) 1.18
The sigma54 regulon (sigmulon) of Pseudomonas putida. Environ Microbiol (2003) 1.14
On the origins of a Vibrio species. Microb Ecol (2010) 1.13
Identification of hyperinvasive Campylobacter jejuni strains isolated from poultry and human clinical sources. J Med Microbiol (2008) 1.12
GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes. Stand Genomic Sci (2009) 1.10
Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome. FEMS Microbiol Lett (2007) 1.09
Cytolethal distending toxin (CDT)-negative Campylobacter jejuni strains and anti-CDT neutralizing antibodies are induced during human infection but not during colonization in chickens. Infect Immun (2005) 1.08
Design of a seven-genome Escherichia coli microarray for comparative genomic profiling. J Bacteriol (2006) 1.07
Structure and genotypic plasticity of the Campylobacter fetus sap locus. Mol Microbiol (2003) 1.07
Chromatin architecture and gene expression in Escherichia coli. Genome Biol (2004) 1.05
The TNFalpha receptor TNFRSF1A and genes encoding the amiloride-sensitive sodium channel ENaC as modulators in cystic fibrosis. Hum Genet (2006) 1.05
From essential to persistent genes: a functional approach to constructing synthetic life. Trends Genet (2012) 1.04
Genome update: the 1000th genome--a cautionary tale. Microbiology (2010) 1.03
Genome update: distribution of two-component transduction systems in 250 bacterial genomes. Microbiology (2005) 1.02
A Helicobacter pylori restriction endonuclease-replacing gene, hrgA, is associated with gastric cancer in Asian strains. Cancer Res (2002) 0.98
Non-O1 Vibrio cholerae unlinked to cholera in Haiti. Proc Natl Acad Sci U S A (2012) 0.96
Defining the Pseudomonas genus: where do we draw the line with Azotobacter? Microb Ecol (2011) 0.96
Binding of Escherichia coli hemolysin and activation of the target cells is not receptor-dependent. J Biol Chem (2005) 0.93
Role of dprA in transformation of Campylobacter jejuni. FEMS Microbiol Lett (2005) 0.93
Strand misalignments lead to quasipalindrome correction. Trends Genet (2003) 0.92
Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae. BMC Genomics (2007) 0.92
Extracytoplasmic function sigma factors in Pseudomonas syringae. Trends Microbiol (2005) 0.91
Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering. BMC Genomics (2009) 0.91
The plasmid genome database. Microbiology (2003) 0.91
Microbial taxonomy in the post-genomic era: rebuilding from scratch? Arch Microbiol (2014) 0.90
Pro-inflammatory feedback activation cycle evoked by attack of Vibrio cholerae cytolysin on human neutrophil granulocytes. Med Microbiol Immunol (2007) 0.89
Functionality of system components: conservation of protein function in protein feature space. Genome Res (2003) 0.89
Inheritance and organisation of the mitochondrial genome differ between two Saccharomyces yeasts. J Mol Biol (2002) 0.88
Transcriptomics and adaptive genomics of the asymptomatic bacteriuria Escherichia coli strain 83972. Mol Genet Genomics (2008) 0.88
Genome update: sigma factors in 240 bacterial genomes. Microbiology (2005) 0.87
Genome update: prediction of secreted proteins in 225 bacterial proteomes. Microbiology (2005) 0.87
Development and application of a new scheme for typing Campylobacter jejuni and Campylobacter coli by PCR-based restriction fragment length polymorphism analysis. J Clin Microbiol (2002) 0.86
Campylobacter fetus subspecies: comparative genomics and prediction of potential virulence targets. Gene (2012) 0.86
Amino acid usage is asymmetrically biased in AT- and GC-rich microbial genomes. PLoS One (2013) 0.86
Genotyping of human and porcine Yersinia enterocolitica, Yersinia intermedia, and Yersinia bercovieri strains from Switzerland by amplified fragment length polymorphism analysis. Appl Environ Microbiol (2006) 0.85
Contagion on the Internet. Emerg Infect Dis (2002) 0.85
A cellular metalloproteinase activates Vibrio cholerae pro-cytolysin. J Biol Chem (2004) 0.85
Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli. Microb Inform Exp (2012) 0.85
Virulence genes in a probiotic E. coli product with a recorded long history of safe use. Eur J Microbiol Immunol (Bp) (2015) 0.85
Review and phylogenetic analysis of qac genes that reduce susceptibility to quaternary ammonium compounds in Staphylococcus species. Eur J Microbiol Immunol (Bp) (2015) 0.84
Stretches of alternating pyrimidine/purines and purines are respectively linked with pathogenicity and growth temperature in prokaryotes. BMC Genomics (2009) 0.84
Comparative genomics of green sulfur bacteria. Photosynth Res (2010) 0.83
Studies on monitoring and tracking genetic resources: an executive summary. Stand Genomic Sci (2009) 0.83
Prediction of highly expressed genes in microbes based on chromatin accessibility. BMC Mol Biol (2007) 0.83
Development of a strain-specific molecular method for quantitating individual campylobacter strains in mixed populations. Appl Environ Microbiol (2008) 0.83
Bayesian prediction of bacterial growth temperature range based on genome sequences. BMC Genomics (2012) 0.82
Sigma factors in a thousand E. coli genomes. Environ Microbiol (2013) 0.82
Genome update: chromosome atlases. Microbiology (2004) 0.81
Global features of the Alcanivorax borkumensis SK2 genome. Environ Microbiol (2007) 0.81
Differences in two-component signal transduction proteins among the genus Brucella: implications for host preference and pathogenesis. Vet Microbiol (2010) 0.78
Genome update: purine strand bias in 280 bacterial genomes. Microbiology (2006) 0.78
Genome Update: Protein secretion systems in 225 bacterial genomes. Microbiology (2005) 0.78
Putative identification of an amphipathic alpha-helical sequence in hemolysin of Escherichia coli (HlyA) involved in transmembrane pore formation. Biol Chem (2008) 0.78
Identification of the membrane penetrating domain of Vibrio cholerae cytolysin as a beta-barrel structure. Mol Microbiol (2005) 0.77
Genome update: prediction of membrane proteins in prokaryotic genomes. Microbiology (2005) 0.77
Genome update: 2D clustering of bacterial genomes. Microbiology (2005) 0.77
Genomic analysis of two-component signal transduction proteins in basidiomycetes. J Mol Microbiol Biotechnol (2010) 0.76
Genome update: correlation of bacterial genomic properties. Microbiology (2004) 0.75