Published in Proteomics on November 01, 2005
Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques. Proteomics (2009) 1.66
A novel signaling network essential for regulating Pseudomonas aeruginosa biofilm development. PLoS Pathog (2009) 1.49
Diguanylate cyclase NicD-based signalling mechanism of nutrient-induced dispersion by Pseudomonas aeruginosa. Mol Microbiol (2014) 1.46
Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. Nucleic Acids Res (2006) 1.34
Quantitative proteomic analysis of histone modifications. Chem Rev (2015) 1.32
Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites. Plant Methods (2006) 1.12
Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography. Mol Cell Proteomics (2012) 1.10
Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites. Plant Methods (2005) 1.10
Probabilistic enrichment of phosphopeptides by their mass defect. Anal Chem (2006) 1.08
In vivo phosphoproteome of human skeletal muscle revealed by phosphopeptide enrichment and HPLC-ESI-MS/MS. J Proteome Res (2009) 1.04
Enrichment techniques employed in phosphoproteomics. Amino Acids (2011) 0.99
Phosphoproteomic profiling of in vivo signaling in liver by the mammalian target of rapamycin complex 1 (mTORC1). PLoS One (2011) 0.98
Large-scale analysis of phosphorylated proteins in maize leaf. Planta (2010) 0.90
Signal processing by protein tyrosine phosphorylation in plants. Plant Signal Behav (2011) 0.87
The diguanylate cyclase GcbA facilitates Pseudomonas aeruginosa biofilm dispersion by activating BdlA. J Bacteriol (2014) 0.86
Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement. Front Plant Sci (2015) 0.82
Selective enrichment and fractionation of phosphopeptides from peptide mixtures by isoelectric focusing after methyl esterification. Anal Chem (2007) 0.82
Effective enrichment and mass spectrometry analysis of phosphopeptides using mesoporous metal oxide nanomaterials. Anal Chem (2010) 0.82
Biotinylated phosphoproteins from kinase-catalyzed biotinylation are stable to phosphatases: implications for phosphoproteomics. Chembiochem (2013) 0.81
Analytical challenges translating mass spectrometry-based phosphoproteomics from discovery to clinical applications. Electrophoresis (2014) 0.81
Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation. Sci Rep (2016) 0.81
In-Depth Analyses of B Cell Signaling Through Tandem Mass Spectrometry of Phosphopeptides Enriched by PolyMAC. Int J Mass Spectrom (2015) 0.78
Phosphoproteomics Profiling of Tobacco Mature Pollen and Pollen Activated in vitro. Mol Cell Proteomics (2016) 0.78
Methods for investigation of targeted kinase inhibitor therapy using chemical proteomics and phosphorylation profiling. Biochem Pharmacol (2010) 0.78
Analysis and prediction of pathways in HeLa cells by integrating biological levels of organization with systems-biology approaches. PLoS One (2013) 0.78
Arabidopsis protein phosphatase DBP1 nucleates a protein network with a role in regulating plant defense. PLoS One (2014) 0.77
PAPE (Prefractionation-Assisted Phosphoprotein Enrichment): A Novel Approach for Phosphoproteomic Analysis of Green Tissues from Plants. Proteomes (2013) 0.75
Phosphoproteomic analysis of liver homogenates. Methods Mol Biol (2012) 0.75
Evaluation of quantitative performance of sequential immobilized metal affinity chromatographic enrichment for phosphopeptides. Anal Biochem (2013) 0.75
Data set from the phosphoproteomic analysis of Magnaporthe oryzae-responsive proteins in susceptible and resistant rice cultivars. Data Brief (2015) 0.75
Protein profile and protein interaction network of Moniliophthora perniciosa basidiospores. BMC Microbiol (2016) 0.75
Activation of SsoPK4, an Archaeal eIF2α Kinase Homolog, by Oxidized CoA. Proteomes (2015) 0.75
Single-crystalline hyperbranched nanostructure of iron hydroxyl phosphate Fe5(PO4)4(OH)3·2H2O for highly selective capture of phosphopeptides. Sci Rep (2014) 0.75
Different Stationary Phase Selectivities and Morphologies for Intact Protein Separations. Chromatographia (2016) 0.75
GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics (2004) 7.33
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res (2007) 2.40
Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Plant Cell (2007) 2.21
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics (2007) 1.71
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol (2010) 1.59
D-GLYCERATE 3-KINASE, the last unknown enzyme in the photorespiratory cycle in Arabidopsis, belongs to a novel kinase family. Plant Cell (2005) 1.43
Differential multisite phosphorylation of the trehalose-6-phosphate synthase gene family in Arabidopsis thaliana: a mass spectrometry-based process for multiparallel peptide library phosphorylation analysis. Mol Cell Proteomics (2005) 1.42
Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen. Nat Commun (2013) 1.40
Metabolite profiling in plant biology: platforms and destinations. Genome Biol (2004) 1.33
Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. Plant J (2010) 1.32
A cytosolic pathway for the conversion of hydroxypyruvate to glycerate during photorespiration in Arabidopsis. Plant Cell (2008) 1.32
Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics (2008) 1.31
Deletion of glycine decarboxylase in Arabidopsis is lethal under nonphotorespiratory conditions. Plant Physiol (2007) 1.22
Medicago truncatula root nodule proteome analysis reveals differential plant and bacteroid responses to drought stress. Plant Physiol (2007) 1.21
An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential 13C-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. J Basic Microbiol (2009) 1.17
Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in Arabidopsis thaliana. Mol Cell Proteomics (2008) 1.13
Cell-specific protein profiling in Arabidopsis thaliana trichomes: identification of trichome-located proteins involved in sulfur metabolism and detoxification. Phytochemistry (2004) 1.13
Deciphering metabolic networks. Eur J Biochem (2003) 1.13
Consistency analysis of metabolic correlation networks. BMC Syst Biol (2007) 1.11
Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography. Mol Cell Proteomics (2012) 1.10
Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites. Plant Methods (2005) 1.10
Characterisation by proteomics of peribacteroid space and peribacteroid membrane preparations from pea (Pisum sativum) symbiosomes. Proteomics (2002) 1.08
Metabolomics unravel contrasting effects of biodiversity on the performance of individual plant species. PLoS One (2010) 1.07
Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. Mol Biosyst (2010) 1.06
Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana. J Exp Bot (2006) 1.05
Granger causality in integrated GC-MS and LC-MS metabolomics data reveals the interface of primary and secondary metabolism. Metabolomics (2012) 1.04
A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics (2008) 1.03
A gentle guide to the analysis of metabolomic data. Methods Mol Biol (2007) 1.02
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics (2009) 1.02
An integrated strategy for identification and relative quantification of site-specific protein phosphorylation using liquid chromatography coupled to MS2/MS3. Rapid Commun Mass Spectrom (2005) 1.02
Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins. Rapid Commun Mass Spectrom (2004) 1.01
A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. Proteomics (2009) 0.99
The role of mass spectrometry in plant systems biology. Mass Spectrom Rev (2006) 0.98
Neurotoxin localization to ectodermal gland cells uncovers an alternative mechanism of venom delivery in sea anemones. Proc Biol Sci (2011) 0.98
If the antibody fails--a mass western approach. Plant J (2008) 0.97
Stable isotope-free quantitative shotgun proteomics combined with sample pattern recognition for rapid diagnostics. J Sep Sci (2006) 0.97
Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry. J Exp Bot (2008) 0.96
Spectral counting robust on high mass accuracy mass spectrometers. Rapid Commun Mass Spectrom (2010) 0.96
Stable isotope labeling of phosphopeptides for multiparallel kinase target analysis and identification of phosphorylation sites. Rapid Commun Mass Spectrom (2003) 0.96
Different functions of the C3HC4 zinc RING finger peroxins PEX10, PEX2, and PEX12 in peroxisome formation and matrix protein import. Proc Natl Acad Sci U S A (2010) 0.95
Systemic cold stress adaptation of Chlamydomonas reinhardtii. Mol Cell Proteomics (2013) 0.95
Carbon metabolism and bacteroid functioning are involved in the regulation of nitrogen fixation in Medicago truncatula under drought and recovery. Mol Plant Microbe Interact (2009) 0.95
Oxidative stress is a consequence, not a cause, of aluminum toxicity in the forage legume Lotus corniculatus. New Phytol (2011) 0.92
A metabolic signature of the beneficial interaction of the endophyte paenibacillus sp. isolate and in vitro-grown poplar plants revealed by metabolomics. Mol Plant Microbe Interact (2009) 0.92
Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform. Metabolomics (2012) 0.92
Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO). Proteomics (2011) 0.91
ProMEX - a mass spectral reference database for plant proteomics. Front Plant Sci (2012) 0.91
Comprehensive cell-specific protein analysis in early and late pollen development from diploid microsporocytes to pollen tube growth. Mol Cell Proteomics (2013) 0.90
Neutral loss-based phosphopeptide recognition: a collection of caveats. J Proteome Res (2007) 0.90
Dynamic adaption of metabolic pathways during germination and growth of lily pollen tubes after inhibition of the electron transport chain. Plant Physiol (2013) 0.89
Drought stress provokes the down-regulation of methionine and ethylene biosynthesis pathways in Medicago truncatula roots and nodules. Plant Cell Environ (2014) 0.88
Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments. Nat Protoc (2013) 0.88
Cell-specific analysis of the tomato pollen proteome from pollen mother cell to mature pollen provides evidence for developmental priming. J Proteome Res (2013) 0.87
Differentiation of plant cells during symbiotic nitrogen fixation. Comp Funct Genomics (2002) 0.85
Local inhibition of nitrogen fixation and nodule metabolism in drought-stressed soybean. J Exp Bot (2013) 0.85
The multinational Arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology. J Proteome Res (2008) 0.85
An improved detergent-compatible gel-fractionation LC-LTQ-Orbitrap-MS workflow for plant and microbial proteomics. Methods Mol Biol (2014) 0.84
Plant protein phosphorylation monitored by capillary liquid chromatography--element mass spectrometry. Biochem Biophys Res Commun (2007) 0.84
A universal protocol for the combined isolation of metabolites, DNA, long RNAs, small RNAs, and proteins from plants and microorganisms. Plant J (2014) 0.83
Methionine oxidation in peptides--a source for false positive phosphopeptide identification in neutral loss driven MS3. Rapid Commun Mass Spectrom (2006) 0.83
Metabolism and development - integration of micro computed tomography data and metabolite profiling reveals metabolic reprogramming from floral initiation to silique development. New Phytol (2013) 0.83
MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber. J Proteome Res (2011) 0.83
Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both distinct and similar responses to cytokinin down- and up-regulation. J Exp Bot (2013) 0.82
Arabidopsis thaliana as a model organism for plant proteome research. J Proteomics (2010) 0.82
Possible Role of Nutritional Priming for Early Salt and Drought Stress Responses in Medicago truncatula. Front Plant Sci (2012) 0.82
Impact of arbuscular mycorrhizal fungi on the allergenic potential of tomato. Mycorrhiza (2010) 0.81
Evidence for novel tomato seed allergens: IgE-reactive legumin and vicilin proteins identified by multidimensional protein fractionation-mass spectrometry and in silico epitope modeling. J Proteome Res (2009) 0.81
Leghemoglobin is nitrated in functional legume nodules in a tyrosine residue within the heme cavity by a nitrite/peroxide-dependent mechanism. Plant J (2015) 0.80
The plasma membrane proteome of maize roots grown under low and high iron conditions. J Proteomics (2013) 0.80
Integrative profiling of metabolites and proteins: improving pattern recognition and biomarker selection for systems level approaches. Methods Mol Biol (2007) 0.79
Mitochondria are an early target of oxidative modifications in senescing legume nodules. New Phytol (2012) 0.79
Expression of root glutamate dehydrogenase genes in tobacco plants subjected to boron deprivation. Plant Physiol Biochem (2011) 0.79
Boosting the globalization of plant proteomics through INPPO: current developments and future prospects. Proteomics (2012) 0.79
Metabolomics and metabolite profiling. Anal Bioanal Chem (2013) 0.79
The different proteomes of Chlamydomonas reinhardtii. J Proteomics (2012) 0.78
Species-specific analysis of protein sequence motifs using mutual information. BMC Bioinformatics (2005) 0.78
Tomato allergy: impact of genotype and environmental factors on the biological response. J Sci Food Agric (2011) 0.77
Functional analysis of proteins and protein species using shotgun proteomics and linear mathematics. Amino Acids (2010) 0.77
Pepino mosaic virus infection of tomato affects allergen expression, but not the allergenic potential of fruits. PLoS One (2013) 0.77
Tandem metal-oxide affinity chromatography for enhanced depth of phosphoproteome analysis. Methods Mol Biol (2014) 0.77
Medicago truncatula proteomics for systems biology: novel rapid shotgun LC-MS approach for relative quantification based on full-scan selective peptide extraction (Selpex). Methods Mol Biol (2014) 0.77