Published in Nucleic Acids Res on June 28, 2006
Complexity of the alternative splicing landscape in plants. Plant Cell (2013) 2.62
Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis. Mol Syst Biol (2008) 2.49
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res (2007) 2.40
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol (2009) 2.38
Effects of abiotic stress on plants: a systems biology perspective. BMC Plant Biol (2011) 2.04
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Genomics and bioinformatics resources for crop improvement. Plant Cell Physiol (2010) 1.33
Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development. Plant Physiol (2009) 1.30
Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes. Plant Physiol (2009) 1.27
Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum. Mol Cell Proteomics (2012) 1.03
Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs. Plant Cell (2014) 1.01
Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots. Plant Physiol (2012) 0.96
Identification of a nuclear localization motif in the serine/arginine protein kinase PSRPK of physarum polycephalum. BMC Biochem (2009) 0.93
The RNA binding protein Tudor-SN is essential for stress tolerance and stabilizes levels of stress-responsive mRNAs encoding secreted proteins in Arabidopsis. Plant Cell (2010) 0.93
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics (2010) 0.92
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Large-scale analysis of phosphorylated proteins in maize leaf. Planta (2010) 0.90
Identification and analysis of phosphorylation status of proteins in dormant terminal buds of poplar. BMC Plant Biol (2011) 0.90
Predicting and analyzing protein phosphorylation sites in plants using musite. Front Plant Sci (2012) 0.84
GabiPD - The GABI Primary Database integrates plant proteomic data with gene-centric information. Front Plant Sci (2012) 0.84
Gene expression profiling of ozone-treated Arabidopsis abi1td insertional mutant: protein phosphatase 2C ABI1 modulates biosynthesis ratio of ABA and ethylene. Planta (2009) 0.83
Regulation of the heat stress response in Arabidopsis by MPK6-targeted phosphorylation of the heat stress factor HsfA2. PeerJ (2013) 0.83
Phosphothreonine 218 is required for the function of SR45.1 in regulating flower petal development in Arabidopsis. Plant Signal Behav (2014) 0.82
Quantitative phosphoproteomics analysis of nitric oxide-responsive phosphoproteins in cotton leaf. PLoS One (2014) 0.82
A shotgun phosphoproteomics analysis of embryos in germinated maize seeds. Planta (2008) 0.81
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The AGC kinase, PINOID, blocks interactive ABCB/PIN auxin transport. Plant Signal Behav (2012) 0.80
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Regulation of mRNA decay in plant responses to salt and osmotic stress. Cell Mol Life Sci (2016) 0.75
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Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography. Anal Biochem (1986) 2.55
Phosphoproteomic analysis of the developing mouse brain. Mol Cell Proteomics (2004) 2.50
Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res (2002) 2.44
Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of pre-messenger RNA. Prog Nucleic Acid Res Mol Biol (2004) 2.23
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Dephosphorylated SRp38 acts as a splicing repressor in response to heat shock. Nature (2004) 1.67
Phosphoproteomic analysis of rat liver by high capacity IMAC and LC-MS/MS. J Proteome Res (2006) 1.61
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Automated immobilized metal affinity chromatography/nano-liquid chromatography/electrospray ionization mass spectrometry platform for profiling protein phosphorylation sites. Rapid Commun Mass Spectrom (2005) 1.56
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The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res (1999) 1.45
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An SC35-like protein and a novel serine/arginine-rich protein interact with Arabidopsis U1-70K protein. J Biol Chem (1999) 1.44
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Mass spectrometric resolution of reversible protein phosphorylation in photosynthetic membranes of Arabidopsis thaliana. J Biol Chem (2000) 1.33
Characterization of phosphorylation sites on histone H1 isoforms by tandem mass spectrometry. J Proteome Res (2004) 1.33
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Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells. Mol Biol Cell (2004) 1.23
Identification of phosphoproteins and their phosphorylation sites in the WEHI-231 B lymphoma cell line. Mol Cell Proteomics (2004) 1.19
Tissue-specific expression and dynamic organization of SR splicing factors in Arabidopsis. Mol Biol Cell (2004) 1.18
A plethora of plant serine/arginine-rich proteins: redundancy or evolution of novel gene functions? Biochem Soc Trans (2004) 1.17
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Interactions of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 small nuclear ribonucleoprotein-specific proteins suggest their involvement in pre-mRNA Splicing. J Biol Chem (2004) 1.14
Alternative splicing modulation by a LAMMER kinase impinges on developmental and transcriptome expression. Plant Cell (2003) 1.13
Nuclear localization and in vivo dynamics of a plant-specific serine/arginine-rich protein. Plant J (2003) 1.12
The ethylene-inducible PK12 kinase mediates the phosphorylation of SR splicing factors. Plant J (2000) 1.04
Functional distribution and dynamics of Arabidopsis SR splicing factors in living plant cells. Plant J (2005) 1.02
Identification of three previously unknown in vivo protein phosphorylation sites in thylakoid membranes of Arabidopsis thaliana. Mol Cell Proteomics (2003) 0.95
Proteomic analysis of cellular signaling. Expert Rev Proteomics (2004) 0.94
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Cloning and characterization of a human DEAH-box RNA helicase, a functional homolog of fission yeast Cdc28/Prp8. Nucleic Acids Res (1998) 0.90
An efficient protocol for the identification of protein phosphorylation in a seedless plant, sensitive enough to detect members of signalling cascades. Electrophoresis (2004) 0.89
Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol (2004) 18.76
Sch9 is a major target of TORC1 in Saccharomyces cerevisiae. Mol Cell (2007) 5.67
Dissociation of cohesin from chromosome arms and loss of arm cohesion during early mitosis depends on phosphorylation of SA2. PLoS Biol (2005) 3.72
The BRI1-associated kinase 1, BAK1, has a brassinolide-independent role in plant cell-death control. Curr Biol (2007) 3.16
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res (2012) 3.10
The MKK2 pathway mediates cold and salt stress signaling in Arabidopsis. Mol Cell (2004) 3.04
Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes. Biochem J (2008) 2.97
Emerging MAP kinase pathways in plant stress signalling. Trends Plant Sci (2005) 2.97
Plant PP2C phosphatases: emerging functions in stress signaling. Trends Plant Sci (2004) 2.89
MAPK cascade signalling networks in plant defence. Curr Opin Plant Biol (2009) 2.70
The MAP kinase substrate MKS1 is a regulator of plant defense responses. EMBO J (2005) 2.66
Complexity of the alternative splicing landscape in plants. Plant Cell (2013) 2.62
Strategies for RNA folding and assembly. Nat Rev Mol Cell Biol (2004) 2.59
The membrane-anchored BOTRYTIS-INDUCED KINASE1 plays distinct roles in Arabidopsis resistance to necrotrophic and biotrophic pathogens. Plant Cell (2005) 2.57
Complexity, cross talk and integration of plant MAP kinase signalling. Curr Opin Plant Biol (2002) 2.46
OXI1 kinase is necessary for oxidative burst-mediated signalling in Arabidopsis. Nature (2004) 2.45
Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res (2002) 2.44
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Res (2011) 2.26
A MAPK pathway mediates ethylene signaling in plants. EMBO J (2003) 2.10
Early signaling events induced by elicitors of plant defenses. Mol Plant Microbe Interact (2006) 2.08
Meiotic chromosome homology search involves modifications of the nuclear envelope protein Matefin/SUN-1. Cell (2009) 1.99
Ustilago maydis as a Pathogen. Annu Rev Phytopathol (2009) 1.95
Alternative splicing in plants--coming of age. Trends Plant Sci (2012) 1.93
A Mitogen-activated protein kinase kinase kinase mediates reactive oxygen species homeostasis in Arabidopsis. J Biol Chem (2006) 1.93
Trojan horse strategy in Agrobacterium transformation: abusing MAPK defense signaling. Science (2007) 1.90
Association of stomatin with lipid bodies. J Biol Chem (2004) 1.88
The PP2C-type phosphatase AP2C1, which negatively regulates MPK4 and MPK6, modulates innate immunity, jasmonic acid, and ethylene levels in Arabidopsis. Plant Cell (2007) 1.86
An abscisic acid-independent oxylipin pathway controls stomatal closure and immune defense in Arabidopsis. PLoS Biol (2013) 1.85
14-3-3 proteins recognize a histone code at histone H3 and are required for transcriptional activation. EMBO J (2007) 1.69
Mitogen-activated protein kinases and reactive oxygen species signaling in plants. Plant Physiol (2006) 1.57
Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins. Nucleic Acids Res (2006) 1.47
MAP kinase phosphatase1 and protein tyrosine phosphatase1 are repressors of salicylic acid synthesis and SNC1-mediated responses in Arabidopsis. Plant Cell (2009) 1.45
Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts. Plant J (2007) 1.45
Stress-induced protein phosphatase 2C is a negative regulator of a mitogen-activated protein kinase. J Biol Chem (2003) 1.43
New insights into an old story: Agrobacterium-induced tumour formation in plants by plant transformation. EMBO J (2010) 1.42
The Arabidopsis mitogen-activated protein kinase kinase MKK3 is upstream of group C mitogen-activated protein kinases and participates in pathogen signaling. Plant Cell (2007) 1.42
A major role of the MEKK1-MKK1/2-MPK4 pathway in ROS signalling. Mol Plant (2009) 1.41
The Ca(2+) -dependent protein kinase CPK3 is required for MAPK-independent salt-stress acclimation in Arabidopsis. Plant J (2010) 1.40
Transgenerational stress memory is not a general response in Arabidopsis. PLoS One (2009) 1.40
Novel bilobe components in Trypanosoma brucei identified using proximity-dependent biotinylation. Eukaryot Cell (2012) 1.39
Novel ATP-binding and autophosphorylation activity associated with Arabidopsis and human cryptochrome-1. Eur J Biochem (2003) 1.38
Ectopic expression of atRSZ33 reveals its function in splicing and causes pleiotropic changes in development. Mol Biol Cell (2003) 1.37
A chloroplast retrograde signal regulates nuclear alternative splicing. Science (2014) 1.36
Reactive oxygen species signaling in plants. Antioxid Redox Signal (2006) 1.36
Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. J Proteome Res (2008) 1.34
The MAP kinase MPK4 is required for cytokinesis in Arabidopsis thaliana. Plant Cell (2010) 1.32
VIP1 response elements mediate mitogen-activated protein kinase 3-induced stress gene expression. Proc Natl Acad Sci U S A (2009) 1.31
Mononucleotide derivatives as ribosomal P-site substrates reveal an important contribution of the 2'-OH to activity. Nucleic Acids Res (2003) 1.31
Convergence and divergence of stress-induced mitogen-activated protein kinase signaling pathways at the level of two distinct mitogen-activated protein kinase kinases. Plant Cell (2002) 1.31
Sfp1 interaction with TORC1 and Mrs6 reveals feedback regulation on TOR signaling. Mol Cell (2009) 1.30
Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors. J Biol Chem (2002) 1.30
Evolutionary conservation of minor U12-type spliceosome between plants and humans. RNA (2005) 1.29
Proto-oncoprotein TLS/FUS is associated to the nuclear matrix and complexed with splicing factors PTB, SRm160, and SR proteins. Exp Cell Res (2003) 1.27
Phosphoproteomics strategies for the functional analysis of signal transduction. Proteomics (2006) 1.26
Heavy metal stress. Activation of distinct mitogen-activated protein kinase pathways by copper and cadmium. Plant Physiol (2004) 1.25
Involvement of the mitogen-activated protein kinase SIMK in regulation of root hair tip growth. EMBO J (2002) 1.25
OMTK1, a novel MAPKKK, channels oxidative stress signaling through direct MAPK interaction. J Biol Chem (2004) 1.25
The dark side of the salad: Salmonella typhimurium overcomes the innate immune response of Arabidopsis thaliana and shows an endopathogenic lifestyle. PLoS One (2008) 1.23
Glycogen synthase kinase 3/SHAGGY-like kinases in plants: an emerging family with novel functions. Trends Plant Sci (2002) 1.23
Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells. Mol Biol Cell (2004) 1.23
Analysis of nitric oxide signaling functions in tobacco cells challenged by the elicitor cryptogein. Plant Physiol (2004) 1.22
Physical-chemical plant-derived signals induce differentiation in Ustilago maydis. Mol Microbiol (2008) 1.20
Activation of Atg1 kinase in autophagy by regulated phosphorylation. Autophagy (2010) 1.19
Protein networking: insights into global functional organization of proteomes. Proteomics (2008) 1.17
The MAP kinase kinase MKK2 affects disease resistance in Arabidopsis. Mol Plant Microbe Interact (2007) 1.15
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Opposite changes in membrane fluidity mimic cold and heat stress activation of distinct plant MAP kinase pathways. Plant J (2002) 1.13
Constitutively active mitogen-activated protein kinase versions reveal functions of Arabidopsis MPK4 in pathogen defense signaling. Plant Cell (2012) 1.13
Protein tyrosine phosphorylation in plants: More abundant than expected? Trends Plant Sci (2009) 1.12
Conservation of Salmonella infection mechanisms in plants and animals. PLoS One (2011) 1.12
Quantitative phospho-proteomics to investigate the polo-like kinase 1-dependent phospho-proteome. Mol Cell Proteomics (2011) 1.11
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Localization and dynamics of nuclear speckles in plants. Plant Physiol (2011) 1.09
Brassinosteroid-regulated GSK3/Shaggy-like kinases phosphorylate mitogen-activated protein (MAP) kinase kinases, which control stomata development in Arabidopsis thaliana. J Biol Chem (2013) 1.09
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The OXI1 kinase pathway mediates Piriformospora indica-induced growth promotion in Arabidopsis. PLoS Pathog (2011) 1.02
Disentangling the complexity of mitogen-activated protein kinases and reactive oxygen species signaling. Plant Physiol (2009) 1.02
Plants as alternative hosts for Salmonella. Trends Plant Sci (2012) 1.02
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