Published in J Agric Food Chem on November 02, 2005
Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes. Mol Immunol (2008) 1.05
The property distance index PD predicts peptides that cross-react with IgE antibodies. Mol Immunol (2008) 0.99
TILLING for allergen reduction and improvement of quality traits in peanut (Arachis hypogaea L.). BMC Plant Biol (2011) 0.99
Characteristic motifs for families of allergenic proteins. Mol Immunol (2008) 0.98
Bioinformatics approaches to classifying allergens and predicting cross-reactivity. Immunol Allergy Clin North Am (2007) 0.94
Computationally predicted IgE epitopes of walnut allergens contribute to cross-reactivity with peanuts. Allergy (2011) 0.89
EVALLER: a web server for in silico assessment of potential protein allergenicity. Nucleic Acids Res (2007) 0.85
Structural analysis of linear and conformational epitopes of allergens. Regul Toxicol Pharmacol (2008) 0.85
Heterogeneous responses and cross reactivity between the major peanut allergens Ara h 1, 2,3 and 6 in a mouse model for peanut allergy. Clin Transl Allergy (2015) 0.84
The molecular basis of peanut allergy. Curr Allergy Asthma Rep (2014) 0.83
Robust quantitative modeling of peptide binding affinities for MHC molecules using physical-chemical descriptors. Protein Pept Lett (2007) 0.77
Physicochemical property consensus sequences for functional analysis, design of multivalent antigens and targeted antivirals. BMC Bioinformatics (2012) 0.77
Assessment of 3D models for allergen research. Proteins (2013) 0.76
Selectively receptor-blind measles viruses: Identification of residues necessary for SLAM- or CD46-induced fusion and their localization on a new hemagglutinin structural model. J Virol (2004) 2.42
Measles virus blind to its epithelial cell receptor remains virulent in rhesus monkeys but cannot cross the airway epithelium and is not shed. J Clin Invest (2008) 2.21
SDAP: database and computational tools for allergenic proteins. Nucleic Acids Res (2003) 1.61
The heads of the measles virus attachment protein move to transmit the fusion-triggering signal. Nat Struct Mol Biol (2011) 1.61
Conformational flexibility of mammalian cytochrome P450 2B4 in binding imidazole inhibitors with different ring chemistry and side chains. Solution thermodynamics and molecular modeling. J Biol Chem (2006) 1.35
Dynamic interaction of the measles virus hemagglutinin with its receptor signaling lymphocytic activation molecule (SLAM, CD150). J Biol Chem (2008) 1.29
Host S-nitrosylation inhibits clostridial small molecule-activated glucosylating toxins. Nat Med (2011) 1.19
Base of the measles virus fusion trimer head receives the signal that triggers membrane fusion. J Biol Chem (2012) 1.18
Nearby clusters of hemagglutinin residues sustain SLAM-dependent canine distemper virus entry in peripheral blood mononuclear cells. J Virol (2005) 1.17
A "moving metal mechanism" for substrate cleavage by the DNA repair endonuclease APE-1. Proteins (2007) 1.16
Identifying property based sequence motifs in protein families and superfamilies: application to DNase-1 related endonucleases. Bioinformatics (2003) 1.15
InterProSurf: a web server for predicting interacting sites on protein surfaces. Bioinformatics (2007) 1.14
Data mining of sequences and 3D structures of allergenic proteins. Bioinformatics (2002) 1.10
Automated detection of conformational epitopes using phage display Peptide sequences. Bioinform Biol Insights (2009) 1.09
Membrane-protein interactions contribute to efficient 27-hydroxylation of cholesterol by mitochondrial cytochrome P450 27A1. J Biol Chem (2002) 1.08
Membrane fusion triggering: three modules with different structure and function in the upper half of the measles virus attachment protein stalk. J Biol Chem (2012) 1.07
Molego-based definition of the architecture and specificity of metal-binding sites. Proteins (2005) 1.05
Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes. Mol Immunol (2008) 1.05
Major linear IgE epitopes of mountain cedar pollen allergen Jun a 1 map to the pectate lyase catalytic site. Mol Immunol (2003) 1.02
Determining functionally important amino acid residues of the E1 protein of Venezuelan equine encephalitis virus. J Mol Model (2006) 1.00
The property distance index PD predicts peptides that cross-react with IgE antibodies. Mol Immunol (2008) 0.99
Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces. J Mol Model (2007) 0.99
NMR structure of the viral peptide linked to the genome (VPg) of poliovirus. Peptides (2006) 0.99
Stereophysicochemical variability plots highlight conserved antigenic areas in Flaviviruses. Virol J (2005) 0.98
Characteristic motifs for families of allergenic proteins. Mol Immunol (2008) 0.98
Using property based sequence motifs and 3D modeling to determine structure and functional regions of proteins. Curr Med Chem (2004) 0.98
Effects of backbone contacts 3' to the abasic site on the cleavage and the product binding by human apurinic/apyrimidinic endonuclease (APE1). Biochemistry (2004) 0.97
Unusual role of a cysteine residue in substrate binding and activity of human AP-endonuclease 1. J Mol Biol (2008) 0.94
Bioinformatics approaches to classifying allergens and predicting cross-reactivity. Immunol Allergy Clin North Am (2007) 0.94
Structural basis for epitope sharing between group 1 allergens of cedar pollen. Mol Immunol (2005) 0.91
Detecting potential IgE-reactive sites on food proteins using a sequence and structure database, SDAP-food. J Agric Food Chem (2003) 0.90
Structural and functional analysis of Aplysia attractins, a family of water-borne protein pheromones with interspecific attractiveness. Proc Natl Acad Sci U S A (2004) 0.90
Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases. BMC Bioinformatics (2002) 0.89
Modeling the bioconcentration factors and bioaccumulation factors of polychlorinated biphenyls with posetic quantitative super-structure/activity relationships (QSSAR). Mol Divers (2006) 0.89
Validation of a phage display and computational algorithm by mapping a conformational epitope of Bla g 2. Int Arch Allergy Immunol (2011) 0.87
Identification and analysis of conserved sequence motifs in cytochrome P450 family 2. Functional and structural role of a motif 187RFDYKD192 in CYP2B enzymes. J Biol Chem (2008) 0.87
A multimeric model for murine anti-apoptotic protein Bcl-2 and structural insights for its regulation by post-translational modification. J Mol Model (2003) 0.86
Mechanical stability and differentially conserved physical-chemical properties of titin Ig-domains. Proteins (2009) 0.86
Structural analysis of linear and conformational epitopes of allergens. Regul Toxicol Pharmacol (2008) 0.85
NMR solution structure of attractin, a water-borne protein pheromone from the mollusk Aplysia californica. Biochemistry (2003) 0.84
An Allergen Portrait Gallery: Representative Structures and an Overview of IgE Binding Surfaces. Bioinform Biol Insights (2010) 0.83
NMR solution structure of poliovirus uridylyated peptide linked to the genome (VPgpU). Peptides (2010) 0.82
Automated assignment and 3D structure calculations using combinations of 2D homonuclear and 3D heteronuclear NOESY spectra. J Biomol NMR (2002) 0.80
Co-localization of glyceraldehyde-3-phosphate dehydrogenase with ferredoxin-NADP reductase in pea leaf chloroplasts. J Struct Biol (2007) 0.80
Clostridial toxins: sensing a target in a hostile gut environment. Gut Microbes (2012) 0.80
MD simulation and experimental evidence for Mg²+ binding at the B site in human AP endonuclease 1. Bioinformation (2011) 0.80
Combinatorics of reaction-network posets. Comb Chem High Throughput Screen (2008) 0.78
Four new topological indices based on the molecular path code. J Chem Inf Model (2007) 0.77
Robust quantitative modeling of peptide binding affinities for MHC molecules using physical-chemical descriptors. Protein Pept Lett (2007) 0.77
Molluscan attractins, a family of water-borne protein pheromones with interspecific attractiveness. Peptides (2005) 0.77
Posetic quantitative superstructure/activity relationships (QSSARs) for chlorobenzenes. J Chem Inf Model (2005) 0.77
Assessment of 3D models for allergen research. Proteins (2013) 0.76
AllerML: markup language for allergens. Regul Toxicol Pharmacol (2011) 0.75
Engineering proteins with enhanced mechanical stability by force-specific sequence motifs. Proteins (2012) 0.75
Editorial: Molecular topology and chemical connectivity. Curr Comput Aided Drug Des (2013) 0.75
D-graph clusters flaviviruses and β-coronaviruses according to their hosts, disease type and human cell receptors. bioRxiv (2020) 0.75
Machine learning for virtual screening (part 1). Comb Chem High Throughput Screen (2009) 0.75
Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity. Bioinformatics (2017) 0.75
Machine learning for virtual screening (part 2). Comb Chem High Throughput Screen (2009) 0.75