Published in Nucleic Acids Res on January 01, 2003
AlgPred: prediction of allergenic proteins and mapping of IgE epitopes. Nucleic Acids Res (2006) 1.59
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Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines. BMC Bioinformatics (2004) 1.14
AllerHunter: a SVM-pairwise system for assessment of allergenicity and allergic cross-reactivity in proteins. PLoS One (2009) 1.09
The property distance index PD predicts peptides that cross-react with IgE antibodies. Mol Immunol (2008) 0.99
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Bioinformatics approaches to classifying allergens and predicting cross-reactivity. Immunol Allergy Clin North Am (2007) 0.94
Comparative genomics of fungal allergens and epitopes shows widespread distribution of closely related allergen and epitope orthologues. BMC Genomics (2006) 0.92
Computationally predicted IgE epitopes of walnut allergens contribute to cross-reactivity with peanuts. Allergy (2011) 0.89
Structure of allergens and structure based epitope predictions. Methods (2013) 0.86
Genetically modified foods: safety, risks and public concerns-a review. J Food Sci Technol (2012) 0.85
Computational detection of allergenic proteins attains a new level of accuracy with in silico variable-length peptide extraction and machine learning. Nucleic Acids Res (2006) 0.85
EVALLER: a web server for in silico assessment of potential protein allergenicity. Nucleic Acids Res (2007) 0.85
Structural analysis of linear and conformational epitopes of allergens. Regul Toxicol Pharmacol (2008) 0.85
An Allergen Portrait Gallery: Representative Structures and an Overview of IgE Binding Surfaces. Bioinform Biol Insights (2010) 0.83
In silico analysis of chimeric TF, Omp31 and BP26 fragments of Brucella melitensis for development of a multi subunit vaccine candidate. Iran J Basic Med Sci (2014) 0.82
The value of position-specific scoring matrices for assessment of protein allegenicity. BMC Bioinformatics (2008) 0.82
AllerTOP--a server for in silico prediction of allergens. BMC Bioinformatics (2013) 0.82
De Novo Transcriptome Analysis of Allium cepa L. (Onion) Bulb to Identify Allergens and Epitopes. PLoS One (2015) 0.80
Allergen Atlas: a comprehensive knowledge center and analysis resource for allergen information. Bioinformatics (2009) 0.80
In Silico Identification of Potential American Cockroach (Periplaneta americana) Allergens. Iran J Public Health (2010) 0.80
Allerdictor: fast allergen prediction using text classification techniques. Bioinformatics (2014) 0.80
Evaluation of the allergenicity potential of TcPR-10 protein from Theobroma cacao. PLoS One (2012) 0.79
Lack of detectable allergenicity in genetically modified maize containing "Cry" proteins as compared to native maize based on in silico & in vitro analysis. PLoS One (2015) 0.78
An In silico Chimeric Vaccine Targeting Breast Cancer Containing Inherent Adjuvant. Iran J Cancer Prev (2015) 0.77
Robust quantitative modeling of peptide binding affinities for MHC molecules using physical-chemical descriptors. Protein Pept Lett (2007) 0.77
Proteomic analysis and candidate allergenic proteins in Populus deltoides CL. "2KEN8" mature pollen. Front Plant Sci (2015) 0.76
Assessment of 3D models for allergen research. Proteins (2013) 0.76
Targeted proteomics: Current status and future perspectives for quantification of food allergens. J Proteomics (2016) 0.76
An SVM method using evolutionary information for the identification of allergenic proteins. Bioinformation (2008) 0.76
In Silico Design of a Chimeric Protein Containing Antigenic Fragments of Helicobacter pylori; A Bioinformatic Approach. Open Microbiol J (2016) 0.76
Computational analysis of the relationship between allergenicity and digestibility of allergenic proteins in simulated gastric fluid. BMC Bioinformatics (2007) 0.75
Extending rule-based methods to model molecular geometry and 3D model resolution. BMC Syst Biol (2016) 0.75
Structure-based modelling of hemocyanin allergenicity in squid and its response to high hydrostatic pressure. Sci Rep (2017) 0.75
AllerML: markup language for allergens. Regul Toxicol Pharmacol (2011) 0.75
The Cloning and Expression of Human Monoclonal Antibodies: Implications for Allergen Immunotherapy. Curr Allergy Asthma Rep (2016) 0.75
An Introduction to B-Cell Epitope Mapping and In Silico Epitope Prediction. J Immunol Res (2016) 0.75
Molecular, proteomic and immunological parameters of allergens provide inclusion criteria for new candidates within established grass and tree homologous groups. World Allergy Organ J (2015) 0.75
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res (2000) 67.44
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The Protein Data Bank: unifying the archive. Nucleic Acids Res (2002) 12.37
The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Res (2002) 12.20
Enhanced genome annotation using structural profiles in the program 3D-PSSM. J Mol Biol (2000) 10.87
Structural biology of allergens. J Allergy Clin Immunol (2000) 1.67
Molecular and biochemical classification of plant-derived food allergens. J Allergy Clin Immunol (2000) 1.38
Clinical implications of cross-reactive food allergens. J Allergy Clin Immunol (2001) 1.36
Sequence specificity, statistical potentials, and three-dimensional structure prediction with self-correcting distance geometry calculations of beta-sheet formation in proteins. Protein Sci (1999) 1.31
A cost of illness study of allergic rhinitis in the United States. J Allergy Clin Immunol (1997) 1.29
Cockroach allergens and asthma in Brazil: identification of tropomyosin as a major allergen with potential cross-reactivity with mite and shrimp allergens. J Allergy Clin Immunol (1999) 1.18
Predicting the helix packing of globular proteins by self-correcting distance geometry. Protein Sci (1995) 1.10
Data mining of sequences and 3D structures of allergenic proteins. Bioinformatics (2002) 1.10
Homology modeling and characterization of IgE binding epitopes of mountain cedar allergen Jun a 3. Biophys J (2000) 1.09
Membrane-protein interactions contribute to efficient 27-hydroxylation of cholesterol by mitochondrial cytochrome P450 27A1. J Biol Chem (2002) 1.08
Possible induction of food allergy during mite immunotherapy. Allergy (1996) 1.07
Aplysia attractin: biophysical characterization and modeling of a water-borne pheromone. Biophys J (2001) 1.00
Homology modeling and simulations of nuclease structures. Methods Mol Biol (2001) 0.98
cDNA cloning and molecular identification of the major oyster allergen from the Pacific oyster Crassostrea gigas. Clin Exp Allergy (2001) 0.89
Sequence databases for assessing the potential allergenicity of proteins used in transgenic foods. Adv Food Nutr Res (1998) 0.89
MASIA: recognition of common patterns and properties in multiple aligned protein sequences. Bioinformatics (2000) 0.89
Basic features of crossreactivity in tree and grass pollen allergy. Clin Rev Allergy Immunol (1997) 0.83
Selectively receptor-blind measles viruses: Identification of residues necessary for SLAM- or CD46-induced fusion and their localization on a new hemagglutinin structural model. J Virol (2004) 2.42
Measles virus blind to its epithelial cell receptor remains virulent in rhesus monkeys but cannot cross the airway epithelium and is not shed. J Clin Invest (2008) 2.21
The heads of the measles virus attachment protein move to transmit the fusion-triggering signal. Nat Struct Mol Biol (2011) 1.61
Conformational flexibility of mammalian cytochrome P450 2B4 in binding imidazole inhibitors with different ring chemistry and side chains. Solution thermodynamics and molecular modeling. J Biol Chem (2006) 1.35
Dynamic interaction of the measles virus hemagglutinin with its receptor signaling lymphocytic activation molecule (SLAM, CD150). J Biol Chem (2008) 1.29
Host S-nitrosylation inhibits clostridial small molecule-activated glucosylating toxins. Nat Med (2011) 1.19
Base of the measles virus fusion trimer head receives the signal that triggers membrane fusion. J Biol Chem (2012) 1.18
Nearby clusters of hemagglutinin residues sustain SLAM-dependent canine distemper virus entry in peripheral blood mononuclear cells. J Virol (2005) 1.17
A "moving metal mechanism" for substrate cleavage by the DNA repair endonuclease APE-1. Proteins (2007) 1.16
Identifying property based sequence motifs in protein families and superfamilies: application to DNase-1 related endonucleases. Bioinformatics (2003) 1.15
InterProSurf: a web server for predicting interacting sites on protein surfaces. Bioinformatics (2007) 1.14
Data mining of sequences and 3D structures of allergenic proteins. Bioinformatics (2002) 1.10
Automated detection of conformational epitopes using phage display Peptide sequences. Bioinform Biol Insights (2009) 1.09
Membrane-protein interactions contribute to efficient 27-hydroxylation of cholesterol by mitochondrial cytochrome P450 27A1. J Biol Chem (2002) 1.08
Membrane fusion triggering: three modules with different structure and function in the upper half of the measles virus attachment protein stalk. J Biol Chem (2012) 1.07
Molego-based definition of the architecture and specificity of metal-binding sites. Proteins (2005) 1.05
Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes. Mol Immunol (2008) 1.05
Novel inhibitors of anthrax edema factor. Bioorg Med Chem (2008) 1.03
Major linear IgE epitopes of mountain cedar pollen allergen Jun a 1 map to the pectate lyase catalytic site. Mol Immunol (2003) 1.02
Determining functionally important amino acid residues of the E1 protein of Venezuelan equine encephalitis virus. J Mol Model (2006) 1.00
The property distance index PD predicts peptides that cross-react with IgE antibodies. Mol Immunol (2008) 0.99
Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces. J Mol Model (2007) 0.99
NMR structure of the viral peptide linked to the genome (VPg) of poliovirus. Peptides (2006) 0.99
Stereophysicochemical variability plots highlight conserved antigenic areas in Flaviviruses. Virol J (2005) 0.98
Characteristic motifs for families of allergenic proteins. Mol Immunol (2008) 0.98
Using property based sequence motifs and 3D modeling to determine structure and functional regions of proteins. Curr Med Chem (2004) 0.98
Effects of backbone contacts 3' to the abasic site on the cleavage and the product binding by human apurinic/apyrimidinic endonuclease (APE1). Biochemistry (2004) 0.97
Role of BC loop residues in structure, function and antigenicity of the West Nile virus envelope protein receptor-binding domain III. Virology (2010) 0.94
Unusual role of a cysteine residue in substrate binding and activity of human AP-endonuclease 1. J Mol Biol (2008) 0.94
Common physical-chemical properties correlate with similar structure of the IgE epitopes of peanut allergens. J Agric Food Chem (2005) 0.94
Bioinformatics approaches to classifying allergens and predicting cross-reactivity. Immunol Allergy Clin North Am (2007) 0.94
Structural basis for epitope sharing between group 1 allergens of cedar pollen. Mol Immunol (2005) 0.91
Detecting potential IgE-reactive sites on food proteins using a sequence and structure database, SDAP-food. J Agric Food Chem (2003) 0.90
Structural and functional analysis of Aplysia attractins, a family of water-borne protein pheromones with interspecific attractiveness. Proc Natl Acad Sci U S A (2004) 0.90
Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases. BMC Bioinformatics (2002) 0.89
PCP consensus sequences of flaviviruses: correlating variance with vector competence and disease phenotype. J Mol Biol (2009) 0.88
Flavitrack: an annotated database of flavivirus sequences. Bioinformatics (2007) 0.87
Identification and analysis of conserved sequence motifs in cytochrome P450 family 2. Functional and structural role of a motif 187RFDYKD192 in CYP2B enzymes. J Biol Chem (2008) 0.87
Validation of a phage display and computational algorithm by mapping a conformational epitope of Bla g 2. Int Arch Allergy Immunol (2011) 0.87
A multimeric model for murine anti-apoptotic protein Bcl-2 and structural insights for its regulation by post-translational modification. J Mol Model (2003) 0.86
Mechanical stability and differentially conserved physical-chemical properties of titin Ig-domains. Proteins (2009) 0.86
Accounting for ligand-bound metal ions in docking small molecules on adenylyl cyclase toxins. Proteins (2007) 0.85
Structural analysis of linear and conformational epitopes of allergens. Regul Toxicol Pharmacol (2008) 0.85
Testing the efficacy and toxicity of adenylyl cyclase inhibitors against enteric pathogens using in vitro and in vivo models of infection. Infect Immun (2010) 0.85
Computational selection of inhibitors of Abeta aggregation and neuronal toxicity. Bioorg Med Chem (2009) 0.85
Aplysia temptin - the 'glue' in the water-borne attractin pheromone complex. FEBS J (2007) 0.84
NMR solution structure of attractin, a water-borne protein pheromone from the mollusk Aplysia californica. Biochemistry (2003) 0.84
Ara h 1 structure is retained after roasting and is important for enhanced binding to IgE. Mol Nutr Food Res (2012) 0.83
An Allergen Portrait Gallery: Representative Structures and an Overview of IgE Binding Surfaces. Bioinform Biol Insights (2010) 0.83
NMR solution structure of poliovirus uridylyated peptide linked to the genome (VPgpU). Peptides (2010) 0.82
Co-localization of glyceraldehyde-3-phosphate dehydrogenase with ferredoxin-NADP reductase in pea leaf chloroplasts. J Struct Biol (2007) 0.80
Automated assignment and 3D structure calculations using combinations of 2D homonuclear and 3D heteronuclear NOESY spectra. J Biomol NMR (2002) 0.80
Clostridial toxins: sensing a target in a hostile gut environment. Gut Microbes (2012) 0.80
Newly identified water-borne protein pheromones interact with attractin to stimulate mate attraction in Aplysia. Peptides (2005) 0.80
MD simulation and experimental evidence for Mg²+ binding at the B site in human AP endonuclease 1. Bioinformation (2011) 0.80
Flavitrack analysis of the structure and function of West Nile non-structural proteins. Int J Bioinform Res Appl (2010) 0.80
Structure-based redesign of an edema toxin inhibitor. Bioorg Med Chem (2011) 0.79
Simplifying complex sequence information: a PCP-consensus protein binds antibodies against all four Dengue serotypes. Vaccine (2012) 0.79
A general synthetic method toward uridylylated picornavirus VPg proteins. J Pept Sci (2013) 0.79
Molecular dynamics simulations of Aβ fibril interactions with β-sheet breaker peptides. Peptides (2010) 0.78
Molluscan attractins, a family of water-borne protein pheromones with interspecific attractiveness. Peptides (2005) 0.77
Robust quantitative modeling of peptide binding affinities for MHC molecules using physical-chemical descriptors. Protein Pept Lett (2007) 0.77
Assessment of 3D models for allergen research. Proteins (2013) 0.76
A cool way to make proteins. Nat Biotechnol (2004) 0.75
AllerML: markup language for allergens. Regul Toxicol Pharmacol (2011) 0.75
Engineering proteins with enhanced mechanical stability by force-specific sequence motifs. Proteins (2012) 0.75
Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity. Bioinformatics (2017) 0.75
Recombinant production and structural studies of the Aplysia water-borne protein pheromone enticin indicates it has a novel disulfide stabilized fold. Peptides (2006) 0.75
D-graph clusters flaviviruses and β-coronaviruses according to their hosts, disease type and human cell receptors. bioRxiv (2020) 0.75