Published in Genomics on October 24, 2005
Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence. Infect Immun (2009) 2.07
Understanding the accuracy of statistical haplotype inference with sequence data of known phase. Genet Epidemiol (2007) 1.87
Scan of human genome reveals no new Loci under ancient balancing selection. Genetics (2006) 1.68
Different patterns of evolution in the centromeric and telomeric regions of group A and B haplotypes of the human killer cell Ig-like receptor locus. PLoS One (2010) 1.62
Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains. BMC Genomics (2008) 1.18
Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients. Genomics (2008) 1.14
Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor. J Bacteriol (2008) 1.14
Recombinant structures expand and contract inter and intragenic diversification at the KIR locus. BMC Genomics (2013) 0.98
SNP-specific extraction of haplotype-resolved targeted genomic regions. Nucleic Acids Res (2008) 0.92
A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes. BMC Genomics (2014) 0.90
Detecting disease-causing mutations in the human genome by haplotype matching. Am J Hum Genet (2006) 0.89
An Incomplete Understanding of Human Genetic Variation. Genetics (2016) 0.81
Recent Advances in Experimental Whole Genome Haplotyping Methods. Int J Mol Sci (2017) 0.75
Mapping and sequencing of structural variation from eight human genomes. Nature (2008) 30.28
Fine-scale structural variation of the human genome. Nat Genet (2005) 24.31
The accessible chromatin landscape of the human genome. Nature (2012) 16.86
Systematic localization of common disease-associated variation in regulatory DNA. Science (2012) 14.47
Comprehensive transposon mutant library of Pseudomonas aeruginosa. Proc Natl Acad Sci U S A (2003) 10.63
Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients. Proc Natl Acad Sci U S A (2006) 8.85
A high-resolution map of human evolutionary constraint using 29 mammals. Nature (2011) 8.67
An expansive human regulatory lexicon encoded in transcription factor footprints. Nature (2012) 7.27
Characterization of missing human genome sequences and copy-number polymorphic insertions. Nat Methods (2010) 5.44
Haplotype-resolved genome sequencing of a Gujarati Indian individual. Nat Biotechnol (2010) 5.32
Initial sequence and comparative analysis of the cat genome. Genome Res (2007) 4.67
Closing gaps in the human genome with fosmid resources generated from multiple individuals. Nat Genet (2007) 4.30
An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol (2012) 4.15
Noninvasive whole-genome sequencing of a human fetus. Sci Transl Med (2012) 3.94
Experimental stroke induces massive, rapid activation of the peripheral immune system. J Cereb Blood Flow Metab (2006) 3.91
TriTrypDB: a functional genomic resource for the Trypanosomatidae. Nucleic Acids Res (2009) 3.79
Biological and structural characterization of a host-adapting amino acid in influenza virus. PLoS Pathog (2010) 3.65
A comprehensive transposon mutant library of Francisella novicida, a bioweapon surrogate. Proc Natl Acad Sci U S A (2007) 3.49
Splenic atrophy in experimental stroke is accompanied by increased regulatory T cells and circulating macrophages. J Immunol (2006) 3.28
A human genome structural variation sequencing resource reveals insights into mutational mechanisms. Cell (2010) 3.22
The DNA sequence of human chromosome 7. Nature (2003) 3.18
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol (2009) 2.94
Population stratification of a common APOBEC gene deletion polymorphism. PLoS Genet (2007) 2.85
T- and B-cell-deficient mice with experimental stroke have reduced lesion size and inflammation. J Cereb Blood Flow Metab (2007) 2.75
The human mitochondrial transcriptome. Cell (2011) 2.70
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. Genome Biol (2007) 2.68
The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line. Nature (2013) 2.65
BEDOPS: high-performance genomic feature operations. Bioinformatics (2012) 2.62
The lytic switch protein of KSHV activates gene expression via functional interaction with RBP-Jkappa (CSL), the target of the Notch signaling pathway. Genes Dev (2002) 2.59
Foamy virus vector integration sites in normal human cells. Proc Natl Acad Sci U S A (2006) 2.52
Widespread plasticity in CTCF occupancy linked to DNA methylation. Genome Res (2012) 2.45
Whole-genome sequence variation among multiple isolates of Pseudomonas aeruginosa. J Bacteriol (2003) 2.41
Middle East respiratory syndrome coronavirus (MERS-CoV) causes transient lower respiratory tract infection in rhesus macaques. Proc Natl Acad Sci U S A (2013) 2.29
Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa. J Bacteriol (2002) 2.13
Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence. Infect Immun (2009) 2.07
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions. Nat Biotechnol (2013) 2.05
Small interfering RNA screens reveal enhanced cisplatin cytotoxicity in tumor cells having both BRCA network and TP53 disruptions. Mol Cell Biol (2006) 1.97
Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS One (2009) 1.94
Large-scale analysis of adeno-associated virus vector integration sites in normal human cells. J Virol (2005) 1.85
Type IV pili-mediated secretion modulates Francisella virulence. Mol Microbiol (2006) 1.83
GeneDB--an annotation database for pathogens. Nucleic Acids Res (2011) 1.82
Exonic transcription factor binding directs codon choice and affects protein evolution. Science (2013) 1.80
GPR30 contributes to estrogen-induced thymic atrophy. Mol Endocrinol (2007) 1.78
Cutting edge: estrogen drives expansion of the CD4+CD25+ regulatory T cell compartment. J Immunol (2004) 1.77
Genome mosaicism is conserved but not unique in Pseudomonas aeruginosa isolates from the airways of young children with cystic fibrosis. Environ Microbiol (2003) 1.68
Comparison of HIV-derived lentiviral and MLV-based gammaretroviral vector integration sites in primate repopulating cells. Mol Ther (2007) 1.68
Identification of a novel CpG DNA class and motif that optimally stimulate B cell and plasmacytoid dendritic cell functions. J Leukoc Biol (2003) 1.65
Ancient haplotypes of the HLA Class II region. Genome Res (2005) 1.62
High-throughput genotyping of intermediate-size structural variation. Hum Mol Genet (2006) 1.61
Potential source of Francisella tularensis live vaccine strain attenuation determined by genome comparison. Infect Immun (2006) 1.55
A population threshold for functional polymorphisms. Genome Res (2003) 1.52
Linker-mediated recombinational subcloning of large DNA fragments using yeast. Genome Res (2002) 1.50
The protective effect of 17beta-estradiol on experimental autoimmune encephalomyelitis is mediated through estrogen receptor-alpha. Am J Pathol (2003) 1.49
Minimal introns are not "junk". Genome Res (2002) 1.49
Evidence for diversifying selection at the pyoverdine locus of Pseudomonas aeruginosa. J Bacteriol (2005) 1.45
Evolution of Burkholderia pseudomallei in recurrent melioidosis. PLoS One (2012) 1.43
Unique integration profiles in a canine model of long-term repopulating cells transduced with gammaretrovirus, lentivirus, or foamy virus. Hum Gene Ther (2007) 1.42
Multiarm high-throughput integration site detection: limitations of LAM-PCR technology and optimization for clonal analysis. Stem Cells Dev (2007) 1.32