The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K.

AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system. Nucleic Acids Res (2006) 10.39

Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci U S A (2006) 10.24

Multireplicon genome architecture of Lactobacillus salivarius. Proc Natl Acad Sci U S A (2006) 2.43

Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production. DNA Res (2008) 2.37

Colon-specific delivery of a probiotic-derived soluble protein ameliorates intestinal inflammation in mice through an EGFR-dependent mechanism. J Clin Invest (2011) 2.16

Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion. J Bacteriol (2007) 2.15

Metagenomic analysis of kimchi, a traditional Korean fermented food. Appl Environ Microbiol (2011) 2.08

Evolutionary genomics of lactic acid bacteria. J Bacteriol (2006) 1.84

Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria. BMC Genomics (2006) 1.65

Comparative genomics of Lactobacillus. Microb Biotechnol (2010) 1.60

C-terminal WxL domain mediates cell wall binding in Enterococcus faecalis and other gram-positive bacteria. J Bacteriol (2006) 1.51

Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118. Appl Environ Microbiol (2006) 1.48

Similarity and differences in the Lactobacillus acidophilus group identified by polyphasic analysis and comparative genomics. J Bacteriol (2006) 1.46

Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria. Appl Environ Microbiol (2008) 1.37

Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism. Appl Environ Microbiol (2008) 1.29

Comparative genomics of lactic acid bacteria reveals a niche-specific gene set. BMC Microbiol (2009) 1.24

Genomic analysis by deep sequencing of the probiotic Lactobacillus brevis KB290 harboring nine plasmids reveals genomic stability. PLoS One (2013) 1.23

Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei. Appl Environ Microbiol (2008) 1.22

Phylogenomic reconstruction of lactic acid bacteria: an update. BMC Evol Biol (2011) 1.13

Distribution of megaplasmids in Lactobacillus salivarius and other lactobacilli. J Bacteriol (2007) 1.11

Functional genomics of lactic acid bacteria: from food to health. Microb Cell Fact (2014) 1.06

Biosynthesis and degradation of H2O2 by vaginal lactobacilli. Appl Environ Microbiol (2009) 1.04

Extensive horizontal transfer of core genome genes between two Lactobacillus species found in the gastrointestinal tract. BMC Evol Biol (2007) 1.03

Gene expression of commensal Lactobacillus johnsonii strain NCC533 during in vitro growth and in the murine gut. J Bacteriol (2007) 1.02

Comparison and utilization of repetitive-element PCR techniques for typing Lactobacillus isolates from the chicken gastrointestinal tract. Appl Environ Microbiol (2009) 1.00

Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome. Appl Environ Microbiol (2010) 0.99

Comparative genomics of Lactobacillus sakei with emphasis on strains from meat. Mol Genet Genomics (2011) 0.98

Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences. Mol Genet Genomics (2008) 0.97

Genome sequence and analysis of Lactobacillus helveticus. Front Microbiol (2013) 0.96

Two different tetracycline resistance mechanisms, plasmid-carried tet(L) and chromosomally located transposon-associated tet(M), coexist in Lactobacillus sakei Rits 9. Appl Environ Microbiol (2008) 0.96

Identification of Lactobacillus sakei genes induced during meat fermentation and their role in survival and growth. Appl Environ Microbiol (2007) 0.95

Population genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories. PLoS One (2013) 0.95

Genome sequence of the bacteriocin-producing Lactobacillus curvatus strain CRL705. J Bacteriol (2012) 0.94

Rapid quantitative detection of Lactobacillus sakei in meat and fermented sausages by real-time PCR. Appl Environ Microbiol (2006) 0.92

Tetracycline resistance-encoding plasmid from Bacillus sp. strain #24, isolated from the marine sponge Haliclona simulans. Appl Environ Microbiol (2010) 0.88

Global transcriptome response in Lactobacillus sakei during growth on ribose. BMC Microbiol (2011) 0.87

Draft Genome Sequence of Lactobacillus sakei Strain FBL1, a Probiotic Bacterium Isolated from Mukeunji, a Long-Fermented Kimchi, in South Korea. Genome Announc (2016) 0.85

Behavior of the meat-borne bacterium Lactobacillus sakei during its transit through the gastrointestinal tracts of axenic and conventional mice. Appl Environ Microbiol (2009) 0.85

Genome sequence of a food spoilage lactic acid bacterium, Leuconostoc gasicomitatum LMG 18811T, in association with specific spoilage reactions. Appl Environ Microbiol (2011) 0.85

Expression of the arginine deiminase pathway genes in Lactobacillus sakei is strain dependent and is affected by the environmental pH. Appl Environ Microbiol (2012) 0.84

The pentose moiety of adenosine and inosine is an important energy source for the fermented-meat starter culture Lactobacillus sakei CTC 494. Appl Environ Microbiol (2011) 0.84

Primary metabolism in Lactobacillus sakei food isolates by proteomic analysis. BMC Microbiol (2010) 0.84

Direct selection and phage display of a Gram-positive secretome. Genome Biol (2007) 0.84

Towards a semi-automatic functional annotation tool based on decision-tree techniques. BMC Proc (2008) 0.84

Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260(T), a psychrotrophic lactic acid bacterium isolated from silage. BMC Genomics (2015) 0.84

Catabolic flexibility of mammalian-associated lactobacilli. Microb Cell Fact (2013) 0.83

Iron sources used by the nonpathogenic lactic acid bacterium Lactobacillus sakei as revealed by electron energy loss spectroscopy and secondary-ion mass spectrometry. Appl Environ Microbiol (2009) 0.82

The identification and functional characterization of WxL proteins from Enterococcus faecium reveal surface proteins involved in extracellular matrix interactions. J Bacteriol (2014) 0.82

Antimicrobial compounds produced by Lactobacillus sakei subsp. sakei 2a, a bacteriocinogenic strain isolated from a Brazilian meat product. J Ind Microbiol Biotechnol (2010) 0.82

Reducing Salt in Raw Pork Sausages Increases Spoilage and Correlates with Reduced Bacterial Diversity. Appl Environ Microbiol (2016) 0.81

Catabolism of N-acetylneuraminic acid, a fitness function of the food-borne lactic acid bacterium Lactobacillus sakei, involves two newly characterized proteins. Appl Environ Microbiol (2013) 0.81

Genome Sequence and Transcriptome Analysis of Meat-Spoilage-Associated Lactic Acid Bacterium Lactococcus piscium MKFS47. Appl Environ Microbiol (2015) 0.81

Characterisation of the gap operon from Lactobacillus plantarum and Lactobacillus sakei. Curr Microbiol (2007) 0.80

Disruption of NF-kappaB signalling by ancient microbial molecules: novel therapies of the future? Gut (2010) 0.80

Alternative sigma factor σH activates competence gene expression in Lactobacillus sakei. BMC Microbiol (2012) 0.80

Heterologous protein secretion in Lactobacilli with modified pSIP vectors. PLoS One (2014) 0.79

Genome analysis of food grade lactic Acid-producing bacteria: from basics to applications. Curr Genomics (2008) 0.79

Analysis of Lactobacillus sakei mutants selected after adaptation to the gastrointestinal tracts of axenic mice. Appl Environ Microbiol (2010) 0.78

Transcriptomic analysis of Staphylococcus xylosus in the presence of nitrate and nitrite in meat reveals its response to nitrosative stress. Front Microbiol (2014) 0.78

Microbial successions are associated with changes in chemical profiles of a model refrigerated fresh pork sausage during an 80-day shelf life study. Appl Environ Microbiol (2014) 0.78

Enterococcal Rgg-like regulator ElrR activates expression of the elrA operon. J Bacteriol (2013) 0.78

Features of Lactobacillus Sakei Isolated from Italian Sausages: Focus on Strains from Ventricina del Vastese. Ital J Food Saf (2015) 0.76

Improvement of raw sausage fermentation by stress-conditioning of the starter organism Lactobacillus sakei. Curr Microbiol (2008) 0.75

A hydrolase from Lactobacillus sakei moonlights as a transaminase. Appl Environ Microbiol (2013) 0.75

Transcriptomic clues to understand the growth of Lactobacillus rhamnosus in cheese. BMC Microbiol (2014) 0.75

Draft Genome Sequence of Lactobacillus sakei Strain wikim 22, Isolated from Kimchi in Chungcheong Province, South Korea. Genome Announc (2014) 0.75

Complete genome sequence and description of Lactococcus garvieae M14 isolated from Algerian fermented milk. New Microbes New Infect (2016) 0.75

Bacterial lessons in sausage making. Nat Biotechnol (2005) 0.75

Advantageous direct quantification of viable closely related probiotics in petit-suisse cheeses under in vitro gastrointestinal conditions by Propidium Monoazide--qPCR. PLoS One (2013) 0.75

Phenotypic and genotypic characterization of peptidoglycan hydrolases of Lactobacillus sakei. J Adv Res (2015) 0.75

Lactobacillus paraplantarum 11-1 Isolated from Rice Bran Pickles Activated Innate Immunity and Improved Survival in a Silkworm Bacterial Infection Model. Front Microbiol (2017) 0.75

Genome Sequence of Lactobacillus sakei subsp. sakei LS25, a Commercial Starter Culture Strain for Fermented Sausage. Genome Announc (2013) 0.75

Development and optimization of a fluorescent differential display PCR system for analyzing the stress response in Lactobacillus sakei strains. Nutrients (2009) 0.75

Genome Sequence of Lactobacillus sakei LK-145 Isolated from a Japanese Sake Cellar as a High Producer of d-Amino Acids. Genome Announc (2017) 0.75

Probiotic Characteristics of Lactobacillus curvatus DN317, a Strain Isolated from Chicken Ceca. Probiotics Antimicrob Proteins (2017) 0.75

Insight into the Genome of Staphylococcus xylosus, a Ubiquitous Species Well Adapted to Meat Products. Microorganisms (2017) 0.75

Draft Genome Sequence of Lactobacillus curvatus FLEC03, a Meat-Borne Isolate from Beef Carpaccio Packaged in a Modified Atmosphere. Genome Announc (2017) 0.75

Lactobacillus sakei: A Starter for Sausage Fermentation, a Protective Culture for Meat Products. Microorganisms (2017) 0.75

Whole-Genome Sequence of Lactobacillus sakei LT-13 Isolated from Moto Starter of Sake. Genome Announc (2017) 0.75

Bacteriocinogenic LAB Strains for Fermented Meat Preservation: Perspectives, Challenges, and Limitations. Probiotics Antimicrob Proteins (2017) 0.75

The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94

Complete genome sequence of the fish pathogen Flavobacterium psychrophilum. Nat Biotechnol (2007) 2.06

Complete genome sequence of the probiotic Lactobacillus casei strain BL23. J Bacteriol (2010) 1.98

Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical maps. Genetics (2006) 1.97

Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek (2002) 1.90

Prediction of surface exposed proteins in Streptococcus pyogenes, with a potential application to other Gram-positive bacteria. Proteomics (2009) 1.58

Proteomic analysis of global changes in protein expression during bile salt exposure of Bifidobacterium longum NCIMB 8809. J Bacteriol (2005) 1.35

Identification of a gene cluster enabling Lactobacillus casei BL23 to utilize myo-inositol. Appl Environ Microbiol (2007) 1.29

The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications. PLoS One (2010) 1.28

Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei. Appl Environ Microbiol (2008) 1.22

Low-pH adaptation and the acid tolerance response of Bifidobacterium longum biotype longum. Appl Environ Microbiol (2007) 1.17

BioMAJ: a flexible framework for databanks synchronization and processing. Bioinformatics (2008) 1.14

Lactate racemization as a rescue pathway for supplying D-lactate to the cell wall biosynthesis machinery in Lactobacillus plantarum. J Bacteriol (2005) 1.14

Adaptation and response of Bifidobacterium animalis subsp. lactis to bile: a proteomic and physiological approach. Appl Environ Microbiol (2007) 1.13

Complete genome sequence of the fish pathogen Flavobacterium branchiophilum. Appl Environ Microbiol (2011) 1.12

The phosphotransferase system of Lactobacillus casei: regulation of carbon metabolism and connection to cold shock response. J Mol Microbiol Biotechnol (2007) 1.11

Isolation of lactic acid bacteria with inhibitory activity against pathogens and spoilage organisms associated with fresh meat. Food Microbiol (2007) 1.11

The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese. PLoS One (2010) 1.08

Evidence for involvement of at least six proteins in adaptation of Lactobacillus sakei to cold temperatures and addition of NaCl. Appl Environ Microbiol (2004) 1.03

Genome sequence of Leuconostoc pseudomesenteroides strain 4882, isolated from a dairy starter culture. J Bacteriol (2012) 1.03

Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysis. J Comput Biol (2012) 1.02

Method for reliable isolation of Lactobacillus sakei strains originating from Tunisian seafood and meat products. Int J Food Microbiol (2007) 1.01

Overview of the gene regulation network and the bacteria biotope tasks in BioNLP'13 shared task. BMC Bioinformatics (2015) 1.01

Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232. J Bacteriol (2011) 0.99

Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777. J Bacteriol (2011) 0.98

Genome sequences of three Leuconostoc citreum strains, LBAE C10, LBAE C11, and LBAE E16, isolated from wheat sourdoughs. J Bacteriol (2012) 0.97

Two different tetracycline resistance mechanisms, plasmid-carried tet(L) and chromosomally located transposon-associated tet(M), coexist in Lactobacillus sakei Rits 9. Appl Environ Microbiol (2008) 0.96

Identification of Lactobacillus sakei genes induced during meat fermentation and their role in survival and growth. Appl Environ Microbiol (2007) 0.95

Population genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories. PLoS One (2013) 0.95

Metalloprotease vsm is the major determinant of toxicity for extracellular products of Vibrio splendidus. Appl Environ Microbiol (2008) 0.93

Erratum to "Lactobacillus sakei: recent developments and future prospects" [Research in Microbiology 152 (2001) 839]. Res Microbiol (2002) 0.92

Genome sequence of Weissella confusa LBAE C39-2, isolated from a wheat sourdough. J Bacteriol (2012) 0.91

Response of a Lactobacillus plantarum human isolate to tannic acid challenge assessed by proteomic analyses. Mol Nutr Food Res (2011) 0.90

Protein synthesis in lactic acid and pathogenic bacteria during recovery from a high pressure treatment. Res Microbiol (2007) 0.90

Fingerprint of lactic acid bacteria population in beef carpaccio is influenced by storage process and seasonal changes. Food Microbiol (2011) 0.90

Optimized invertase expression and secretion cassette for improving Yarrowia lipolytica growth on sucrose for industrial applications. J Ind Microbiol Biotechnol (2013) 0.89

Characterization of a theta-type plasmid from Lactobacillus sakei: a potential basis for low-copy-number vectors in lactobacilli. Appl Environ Microbiol (2003) 0.89

Excisable cassettes: new tools for functional analysis of Streptomyces genomes. Appl Environ Microbiol (2006) 0.89

Physical and genetic map of the Lactobacillus sakei 23K chromosome. Microbiology (2002) 0.88

Genome sequence of Staphylococcus equorum subsp. equorum Mu2, isolated from a French smear-ripened cheese. J Bacteriol (2012) 0.87

Comparative genomics of first available bovine Anaplasma phagocytophilum genome obtained with targeted sequence capture. BMC Genomics (2014) 0.87

Experimental study of coordination patterns during unsteady locomotion in mammals. J Exp Biol (2007) 0.86

Behavior of the meat-borne bacterium Lactobacillus sakei during its transit through the gastrointestinal tracts of axenic and conventional mice. Appl Environ Microbiol (2009) 0.85

Characterization of the insoluble proteome of Lactococcus lactis by SDS-PAGE LC-MS/MS leads to the identification of new markers of adaptation of the bacteria to the mouse digestive tract. J Proteome Res (2010) 0.85

Sakacin P non-producing Lactobacillus sakei strains contain homologues of the sakacin P gene cluster. Res Microbiol (2005) 0.84

Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. BMC Genomics (2014) 0.84

Complete Chromosome Sequence of Carnobacterium maltaromaticum LMA 28. Genome Announc (2013) 0.84

Primary metabolism in Lactobacillus sakei food isolates by proteomic analysis. BMC Microbiol (2010) 0.84

Proteomic comparison of the cytosolic proteins of three Bifidobacterium longum human isolates and B. longum NCC2705. BMC Microbiol (2010) 0.84

A unique in vivo experimental approach reveals metabolic adaptation of the probiotic Propionibacterium freudenreichii to the colon environment. BMC Genomics (2013) 0.83

Exploration of sulfur metabolism in the yeast Kluyveromyces lactis. Appl Microbiol Biotechnol (2011) 0.83

Accumulation of intracellular glycogen and trehalose by Propionibacterium freudenreichii under conditions mimicking cheese ripening in the cold. Appl Environ Microbiol (2012) 0.83

Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3. J Bacteriol (2011) 0.83

Vectors for Lactobacilli and other Gram-positive bacteria based on the minimal replicon of pRV500 from Lactobacillus sakei. Plasmid (2008) 0.83

Inhibition by Lactobacillus sakei of other species in the flora of vacuum packaged raw meats during prolonged storage. Food Microbiol (2009) 0.82

A preliminary analysis of Bifidobacterium longum exported proteins by two-dimensional electrophoresis. J Mol Microbiol Biotechnol (2008) 0.82

Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61. Genome Announc (2014) 0.82

Iron sources used by the nonpathogenic lactic acid bacterium Lactobacillus sakei as revealed by electron energy loss spectroscopy and secondary-ion mass spectrometry. Appl Environ Microbiol (2009) 0.82

Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin. Genome Announc (2013) 0.82

Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems. Genetica (2014) 0.81

Catabolism of N-acetylneuraminic acid, a fitness function of the food-borne lactic acid bacterium Lactobacillus sakei, involves two newly characterized proteins. Appl Environ Microbiol (2013) 0.81

Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water. J Bacteriol (2012) 0.81

The pepR gene of Lactobacillus sakei is positively regulated by anaerobiosis at the transcriptional level. Appl Environ Microbiol (2002) 0.80

Genome sequence of Corynebacterium casei UCMA 3821, isolated from a smear-ripened cheese. J Bacteriol (2012) 0.80

Adaptive response of Lactobacillus sakei 23K during growth in the presence of meat extracts: a proteomic approach. Int J Food Microbiol (2010) 0.80

Genome sequence of the invasive Salmonella enterica subsp. enterica serotype enteritidis strain LA5. J Bacteriol (2012) 0.80

Genome sequence of the persistent Salmonella enterica subsp. enterica serotype Senftenberg strain SS209. J Bacteriol (2012) 0.80

Alternative sigma factor σH activates competence gene expression in Lactobacillus sakei. BMC Microbiol (2012) 0.80

Lactobacillus delbrueckii ssp. lactis and ssp. bulgaricus: a chronicle of evolution in action. BMC Genomics (2014) 0.79

Analysis of Lactobacillus sakei mutants selected after adaptation to the gastrointestinal tracts of axenic mice. Appl Environ Microbiol (2010) 0.78

Intraspecies diversity of Lactobacillus sakei response to oxidative stress and variability of strain performance in mixed strains challenges. Food Microbiol (2011) 0.78

Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses. Appl Environ Microbiol (2009) 0.78

Positive effects of growth at suboptimal temperature and high salt concentration on long-term survival of Lactobacillus sakei. Res Microbiol (2003) 0.77

Studies of male and female meiosis in inv(4)(p1.4;q2.3) pig carriers. Chromosome Res (2010) 0.77