Published in Methods on December 01, 2005
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Genome-wide RNAi analysis of growth and viability in Drosophila cells. Science (2004) 7.75
A functional genomic analysis of cell morphology using RNA interference. J Biol (2003) 5.99
Functional genomic analysis of the Wnt-wingless signaling pathway. Science (2005) 4.73
Identification of Hedgehog pathway components by RNAi in Drosophila cultured cells. Science (2003) 3.63
Identification of alternative splicing regulators by RNA interference in Drosophila. Proc Natl Acad Sci U S A (2004) 3.58
RNA interference of gene expression (RNAi) in cultured Drosophila cells. Sci STKE (2001) 2.14
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Sex, AGility, and the regulation of alternative splicing. Cell (2002) 0.98
Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (2010) 12.39
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell (2009) 11.12
Expansion of the eukaryotic proteome by alternative splicing. Nature (2010) 8.84
Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs. Mol Cell (2012) 3.96
Identification of alternative splicing regulators by RNA interference in Drosophila. Proc Natl Acad Sci U S A (2004) 3.58
Genomewide characterization of non-polyadenylated RNAs. Genome Biol (2011) 2.92
Regulatory divergence in Drosophila revealed by mRNA-seq. Genome Res (2010) 2.69
Analysis of the human neurexin genes: alternative splicing and the generation of protein diversity. Genomics (2002) 2.54
The transcriptional diversity of 25 Drosophila cell lines. Genome Res (2010) 2.47
Diversity and dynamics of the Drosophila transcriptome. Nature (2014) 2.47
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Genome-wide analysis of promoter architecture in Drosophila melanogaster. Genome Res (2010) 2.29
Dynamic integration of splicing within gene regulatory pathways. Cell (2013) 2.25
Global patterns of tissue-specific alternative polyadenylation in Drosophila. Cell Rep (2012) 1.99
The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians. RNA (2008) 1.87
A computational and experimental approach toward a priori identification of alternatively spliced exons. RNA (2004) 1.79
RS domains contact the pre-mRNA throughout spliceosome assembly. Trends Biochem Sci (2005) 1.59
Global analysis of trans-splicing in Drosophila. Proc Natl Acad Sci U S A (2010) 1.47
MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology. RNA (2006) 1.42
Exon-specific RNAi: a tool for dissecting the functional relevance of alternative splicing. RNA (2002) 1.41
A regulator of Dscam mutually exclusive splicing fidelity. Nat Struct Mol Biol (2007) 1.35
RNA structure and the mechanisms of alternative splicing. Curr Opin Genet Dev (2011) 1.35
The origins and implications of Aluternative splicing. Trends Genet (2004) 1.35
Molecular biology: power sequencing. Nature (2008) 1.33
microRNA-Seq reveals cocaine-regulated expression of striatal microRNAs. RNA (2011) 1.26
The genome of Anopheles darlingi, the main neotropical malaria vector. Nucleic Acids Res (2013) 1.16
Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea. RNA (2009) 1.13
The iStem, a long-range RNA secondary structure element required for efficient exon inclusion in the Drosophila Dscam pre-mRNA. Mol Cell Biol (2005) 1.09
Enhancer-dependent 5'-splice site control of fruitless pre-mRNA splicing. J Biol Chem (2003) 1.08
Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing. Genes Dev (2003) 1.05
Probabilistic splicing of Dscam1 establishes identity at the level of single neurons. Cell (2013) 1.05
Tempo and mode of regulatory evolution in Drosophila. Genome Res (2014) 1.05
Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea. PLoS One (2012) 1.04
Competing RNA secondary structures are required for mutually exclusive splicing of the Dscam exon 6 cluster. RNA (2010) 1.04
The three major types of CRISPR-Cas systems function independently in CRISPR RNA biogenesis in Streptococcus thermophilus. Mol Microbiol (2014) 1.02
Characterization of U2AF(6), a splicing factor related to U2AF(35). Mol Cell Biol (2002) 1.01
Genomic imprinting absent in Drosophila melanogaster adult females. Cell Rep (2012) 1.00
Arginine/serine repeats are sufficient to constitute a splicing activation domain. Nucleic Acids Res (2003) 1.00
Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis. RNA Biol (2013) 0.96
Massive expansions of Dscam splicing diversity via staggered homologous recombination during arthropod evolution. RNA (2009) 0.95
Complex alternative splicing. Adv Exp Med Biol (2007) 0.94
Splicing bioinformatics to biology. Genome Biol (2006) 0.91
Evolution of splicing regulatory networks in Drosophila. Genome Res (2014) 0.90
Coordinated control of splicing and translation. Nat Struct Mol Biol (2005) 0.86
Sixty years of genome biology. Genome Biol (2013) 0.85
Exon-specific RNA interference: a tool to determine the functional relevance of proteins encoded by alternatively spliced mRNAs. Methods Mol Biol (2005) 0.84
New insights from existing sequence data: generating breakthroughs without a pipette. Mol Cell (2013) 0.84
Alternative splicing: regulation without regulators. Nat Struct Mol Biol (2009) 0.82
Identification of neoblast- and regeneration-specific miRNAs in the planarian Schmidtea mediterranea. RNA (2013) 0.81
RNA interference of mRNA processing factors in Drosophila S2 cells. Methods Mol Biol (2004) 0.80
Splicing from the outside in. Mol Cell (2007) 0.79
Loss of DNA mismatch repair imparts a selective advantage in planarian adult stem cells. PLoS One (2011) 0.78
Circuitous route to transcription regulation. Mol Cell (2013) 0.77
Using single-strand conformational polymorphism gel electrophoresis to analyze mutually exclusive alternative splicing. Methods Mol Biol (2004) 0.76
Getting the message out. Mol Cell (2008) 0.75
Tips for preparing mRNA-Seq libraries from poly(A)+ mRNA for Illumina transcriptome high-throughput sequencing. Cold Spring Harb Protoc (2013) 0.75