Published in FEMS Microbiol Ecol on August 01, 2005
The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scales. Proc Natl Acad Sci U S A (2007) 2.68
Trade-offs between competition and defense specialists among unicellular planktonic organisms: the "killing the winner" hypothesis revisited. Microbiol Mol Biol Rev (2010) 1.82
Succession and regulation factors of small eukaryote community composition in a lacustrine ecosystem (Lake Pavin). Appl Environ Microbiol (2006) 1.07
Bottom-up versus top-down control of hypo- and epilimnion free-living bacterial community structures in two neighboring freshwater lakes. Appl Environ Microbiol (2011) 0.95
Nutrients and other abiotic factors affecting bacterial communities in an Ohio River (USA). Microb Ecol (2007) 0.92
Temporal patterns in glycolate-utilizing bacterial community composition correlate with phytoplankton population dynamics in humic lakes. Microb Ecol (2010) 0.86
A 2-year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France). Microb Ecol (2010) 0.85
Variation in prokaryotic community composition as a function of resource availability in tidal creek sediments. Appl Environ Microbiol (2008) 0.83
Effects of viruses and predators on prokaryotic community composition. Microb Ecol (2005) 0.81
Do phages impact microbial dynamics, prokaryotic community structure and nutrient dynamics in Lake Bourget? Biol Open (2015) 0.75
Short-term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation. BMC Microbiol (2012) 0.75
Planctomycetes in lakes: poor or strong competitors for phosphorus? Appl Environ Microbiol (2013) 0.75
Functional Responses of Bacterioplankton Diversity and Metabolism to Experimental Bottom-Up and Top-Down Forcings. Microb Ecol (2016) 0.75
Ecosystem-phase interactions: aquatic eutrophication decreases terrestrial plant diversity in California vernal pools. Oecologia (2009) 0.75
Incorporation of 3H-thymidine by different prokaryotic groups in relation to temperature and nutrients in a lacustrine ecosystem. Microb Ecol (2006) 0.75
Health hazards for terrestrial vertebrates from toxic cyanobacteria in surface water ecosystems. Vet Res (2003) 1.74
Metavir: a web server dedicated to virome analysis. Bioinformatics (2011) 1.47
Assessing the diversity and specificity of two freshwater viral communities through metagenomics. PLoS One (2012) 1.44
Genetic diversity of small eukaryotes in lakes differing by their trophic status. Appl Environ Microbiol (2005) 1.39
The molecular diversity of freshwater picoeukaryotes reveals high occurrence of putative parasitoids in the plankton. PLoS One (2008) 1.38
Metavir 2: new tools for viral metagenome comparison and assembled virome analysis. BMC Bioinformatics (2014) 1.32
Viral activity in two contrasting lake ecosystems. Appl Environ Microbiol (2004) 1.27
Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget. Appl Environ Microbiol (2004) 1.26
Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters. Proc Natl Acad Sci U S A (2013) 1.23
Flow cytometric analysis of bacteria- and virus-like particles in lake sediments. J Microbiol Methods (2005) 1.22
Unveiling fungal zooflagellates as members of freshwater picoeukaryotes: evidence from a molecular diversity study in a deep meromictic lake. Environ Microbiol (2007) 1.18
Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads. PLoS One (2012) 1.14
Gene capture coupled to high-throughput sequencing as a strategy for targeted metagenome exploration. DNA Res (2013) 1.12
Succession of bacterial community composition over two consecutive years in two aquatic systems: a natural lake and a lake-reservoir. FEMS Microbiol Ecol (2006) 1.12
Succession and regulation factors of small eukaryote community composition in a lacustrine ecosystem (Lake Pavin). Appl Environ Microbiol (2006) 1.07
Unexpected importance of potential parasites in the composition of the freshwater small-eukaryote community. Appl Environ Microbiol (2008) 1.05
Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems. Environ Microbiol (2009) 1.05
Anaerobic microbial communities in Lake Pavin, a unique meromictic lake in France. Appl Environ Microbiol (2005) 1.04
Viral abundance, production, decay rates and life strategies (lysogeny versus lysis) in Lake Bourget (France). Environ Microbiol (2010) 1.01
Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity. PLoS One (2013) 0.99
Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences. Open Biol (2013) 0.96
Bottom-up versus top-down control of hypo- and epilimnion free-living bacterial community structures in two neighboring freshwater lakes. Appl Environ Microbiol (2011) 0.95
Bacterial community changes during bioremediation of aliphatic hydrocarbon-contaminated soil. FEMS Microbiol Ecol (2010) 0.95
Bacterial communities associated with Microcystis colonies differ from free-living communities living in the same ecosystem. Environ Microbiol Rep (2013) 0.93
Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems. FEMS Microbiol Ecol (2011) 0.92
Assessing phytoplankton structure and spatio-temporal dynamics in a freshwater ecosystem using a powerful multiway statistical analysis. Water Res (2009) 0.91
Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes. Environ Microbiol (2013) 0.91
Ecological traits of planktonic viruses and prokaryotes along a full-salinity gradient. FEMS Microbiol Ecol (2011) 0.90
Identification of sulfur-cycle prokaryotes in a low-sulfate lake (Lake Pavin) using aprA and 16S rRNA gene markers. Microb Ecol (2010) 0.90
Development of a Real-Time PCR assay for quantitative assessment of uncultured freshwater zoosporic fungi. J Microbiol Methods (2010) 0.88
Spatio-temporal changes in the structure of archaeal communities in two deep freshwater lakes. FEMS Microbiol Ecol (2013) 0.88
Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems. Res Microbiol (2013) 0.88
Community composition and activity of prokaryotes associated to detrital particles in two contrasting lake ecosystems. FEMS Microbiol Ecol (2006) 0.87
Vertical structure of small eukaryotes in three lakes that differ by their trophic status: a quantitative approach. ISME J (2010) 0.87
In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes. Microb Biotechnol (2012) 0.86
Community composition of lacustrine small eukaryotes in hyper-eutrophic conditions in relation to top-down and bottom-up factors. FEMS Microbiol Ecol (2007) 0.86
Diversity and dynamics of free-living and particle-associated Betaproteobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities. FEMS Microbiol Ecol (2011) 0.86
A 2-year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France). Microb Ecol (2010) 0.85
From aquatic to terrestrial food webs: decrease of the docosahexaenoic acid/linoleic acid ratio. Lipids (2008) 0.85
Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes. BMC Microbiol (2011) 0.84
Community structure and dynamics of small eukaryotes targeted by new oligonucleotide probes: new insight into the lacustrine microbial food web. Appl Environ Microbiol (2009) 0.83
Temporal dynamics and structure of picocyanobacteria and cyanomyoviruses in two large and deep peri-alpine lakes. FEMS Microbiol Ecol (2013) 0.83
Variations in abundance, genome size, morphology, and functional role of the virioplankton in Lakes Annecy and Bourget over a 1-year period. Microb Ecol (2013) 0.82
Temporal dynamics and phylogenetic diversity of free-living and particle-associated Verrucomicrobia communities in relation to environmental variables in a mesotrophic lake. FEMS Microbiol Ecol (2012) 0.82
Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems. Genetica (2014) 0.81
Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development. BMC Bioinformatics (2010) 0.81
Impact of environmental factors on couplings between bacterial community composition and ectoenzymatic activities in a lacustrine ecosystem. FEMS Microbiol Ecol (2009) 0.81
Effects of viruses and predators on prokaryotic community composition. Microb Ecol (2005) 0.81
Effect of copper sulphate treatment on natural phytoplanktonic communities. Aquat Toxicol (2006) 0.81
P-gp expression in brown trout erythrocytes: evidence of a detoxification mechanism in fish erythrocytes. Sci Rep (2013) 0.80
Planktonic microbial community responses to added copper. Aquat Toxicol (2007) 0.80
Quantitative PCR enumeration of total/toxic Planktothrix rubescens and total cyanobacteria in preserved DNA isolated from lake sediments. Appl Environ Microbiol (2011) 0.79
Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes. Environ Microbiol Rep (2015) 0.79
Prevalence of viral photosynthetic and capsid protein genes from cyanophages in two large and deep perialpine lakes. Appl Environ Microbiol (2013) 0.78
Short- and long-term dynamics of the toxic potential and genotypic structure in benthic populations of Microcystis. Water Res (2011) 0.78
Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea. Microb Ecol (2015) 0.77
Contrasting diversity of phycodnavirus signature genes in two large and deep western European lakes. Environ Microbiol (2013) 0.77
Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems. FEMS Microbiol Ecol (2013) 0.77
Genetic diversity along the life cycle of the cyanobacterium Microcystis: highlight on the complexity of benthic and planktonic interactions. Environ Microbiol (2014) 0.76
PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification. Database (Oxford) (2014) 0.76
Correction: Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus. PLoS One (2016) 0.75
Short-term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation. BMC Microbiol (2012) 0.75
Protein expression from zooplankton communities in a metal contaminated NW mediterranean coastal ecosystem. Mar Environ Res (2012) 0.75
A high-throughput sequencing ecotoxicology study of freshwater bacterial communities and their responses to tebuconazole. FEMS Microbiol Ecol (2014) 0.75
Incorporation of 3H-thymidine by different prokaryotic groups in relation to temperature and nutrients in a lacustrine ecosystem. Microb Ecol (2006) 0.75