PubRank

Tero Aittokallio

Author PubWeight™ 60.80‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments. BMC Genomics 2009 2.70
2 GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. Bioinformatics 2006 2.37
3 Individualized systems medicine strategy to tailor treatments for patients with chemorefractory acute myeloid leukemia. Cancer Discov 2013 1.93
4 Improving missing value estimation in microarray data with gene ontology. Bioinformatics 2005 1.57
5 Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process. Bioinformatics 2007 1.54
6 Integrating probe-level expression changes across generations of Affymetrix arrays. Nucleic Acids Res 2005 1.42
7 Genetic variants and their interactions in the prediction of increased pre-clinical carotid atherosclerosis: the cardiovascular risk in young Finns study. PLoS Genet 2010 1.39
8 Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming. Immunity 2010 1.28
9 Alignment of LC-MS images, with applications to biomarker discovery and protein identification. Proteomics 2008 1.22
10 Quantitative subcellular proteome and secretome profiling of influenza A virus-infected human primary macrophages. PLoS Pathog 2011 1.22
11 Identification of novel IL-4/Stat6-regulated genes in T lymphocytes. J Immunol 2003 1.20
12 Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies. Genome Biol 2009 1.10
13 Th1 response and cytotoxicity genes are down-regulated in cutaneous T-cell lymphoma. Clin Cancer Res 2006 1.05
14 Identification of novel genes regulated by IL-12, IL-4, or TGF-beta during the early polarization of CD4+ lymphocytes. J Immunol 2003 1.02
15 Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks. Bioinformatics 2009 1.02
16 Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays. IEEE/ACM Trans Comput Biol Bioinform 2010 1.01
17 A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments. Proteomics 2005 1.00
18 Quality classification of tandem mass spectrometry data. Bioinformatics 2005 1.00
19 Target inhibition networks: predicting selective combinations of druggable targets to block cancer survival pathways. PLoS Comput Biol 2013 1.00
20 A statistical score for assessing the quality of multiple sequence alignments. BMC Bioinformatics 2006 0.98
21 Missing value imputation improves clustering and interpretation of gene expression microarray data. BMC Bioinformatics 2008 0.96
22 Making sense of large-scale kinase inhibitor bioactivity data sets: a comparative and integrative analysis. J Chem Inf Model 2014 0.95
23 Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets. Brief Bioinform 2009 0.95
24 Obatoclax, saliphenylhalamide, and gemcitabine inhibit influenza a virus infection. J Biol Chem 2012 0.94
25 Reproducibility-optimized test statistic for ranking genes in microarray studies. IEEE/ACM Trans Comput Biol Bioinform 2008 0.93
26 Toward more realistic drug-target interaction predictions. Brief Bioinform 2014 0.92
27 Improved statistical modeling of tumor growth and treatment effect in preclinical animal studies with highly heterogeneous responses in vivo. Clin Cancer Res 2012 0.92
28 Early suppression of immune response pathways characterizes children with prediabetes in genome-wide gene expression profiling. J Autoimmun 2010 0.91
29 An update on clinical proteomics in Alzheimer's research. J Neurochem 2009 0.90
30 Model-based prediction of sequence alignment quality. Bioinformatics 2008 0.89
31 Filtering strategies for improving protein identification in high-throughput MS/MS studies. Proteomics 2009 0.88
32 Quantitative maps of genetic interactions in yeast - comparative evaluation and integrative analysis. BMC Syst Biol 2011 0.87
33 Quantitative proteomics analysis of the nuclear fraction of human CD4+ cells in the early phases of IL-4-induced Th2 differentiation. Mol Cell Proteomics 2010 0.87
34 Predicting quantitative genetic interactions by means of sequential matrix approximation. PLoS One 2008 0.86
35 Network pharmacology applications to map the unexplored target space and therapeutic potential of natural products. Nat Prod Rep 2015 0.85
36 Hierarchical grid transformation for image warping in the analysis of two-dimensional electrophoresis gels. Proteomics 2002 0.85
37 Predicting drug-target interactions through integrative analysis of chemogenetic assays in yeast. Mol Biosyst 2013 0.84
38 Comparison of PDQuest and Progenesis software packages in the analysis of two-dimensional electrophoresis gels. Proteomics 2003 0.84
39 Genetic variants and their interactions in disease risk prediction - machine learning and network perspectives. BioData Min 2013 0.83
40 Biochemical and clinical approaches in evaluating the prognosis of colon cancer. Anticancer Res 2007 0.82
41 Mahalanobis distance screening of Arabidopsis mutants with chlorophyll fluorescence. Photosynth Res 2010 0.82
42 Efficient estimation of emission probabilities in profile hidden Markov models. Bioinformatics 2003 0.82
43 Chk1 targeting reactivates PP2A tumor suppressor activity in cancer cells. Cancer Res 2013 0.82
44 Overnight variability in transcutaneous carbon dioxide predicts vascular impairment in women. Exp Physiol 2008 0.81
45 Improving identification of differentially expressed genes by integrative analysis of Affymetrix and Illumina arrays. OMICS 2006 0.81
46 Sleep quality, daytime sleepiness and fasting insulin levels in women with chronic obstructive pulmonary disease. Respir Med 2005 0.81
47 Intra-tissue steroid profiling indicates differential progesterone and testosterone metabolism in the endometrium and endometriosis lesions. J Clin Endocrinol Metab 2014 0.81
48 A multilevel layout algorithm for visualizing physical and genetic interaction networks, with emphasis on their modular organization. BioData Min 2012 0.81
49 Resampling reveals sample-level differential expression in clinical genome-wide studies. OMICS 2009 0.81
50 Kinetics and STAT4- or STAT6-mediated regulation of genes involved in lymphocyte polarization to Th1 and Th2 cells. Eur J Immunol 2003 0.80
51 Statistical methods for identifying conserved residues in multiple sequence alignment. Stat Appl Genet Mol Biol 2004 0.79
52 Can carotid body perfusion act as a respiratory controller? J Theor Biol 2007 0.78
53 Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations. Algorithms Mol Biol 2012 0.78
54 Medroxyprogesterone improves nocturnal breathing in postmenopausal women with chronic obstructive pulmonary disease. Respir Res 2005 0.77
55 Optimized detection of transcription factor-binding sites in ChIP-seq experiments. Nucleic Acids Res 2011 0.77
56 Effect of medroxyprogesterone on inspiratory flow shapes during sleep in postmenopausal women. Respir Physiol Neurobiol 2003 0.77
57 PolyAlign: A Versatile LC-MS Data Alignment Tool for Landmark-Selected and -Automated Use. Int J Proteomics 2011 0.77
58 Statistical detection of quantitative protein biomarkers provides insights into signaling networks deregulated in acute myeloid leukemia. Proteomics 2014 0.77
59 Ovarian endometriosis signatures established through discovery and directed mass spectrometry analysis. J Proteome Res 2014 0.76
60 Genome-wide scoring of positive and negative epistasis through decomposition of quantitative genetic interaction fitness matrices. PLoS One 2010 0.76
61 Pravastatin-induced improvement in coronary reactivity and circulating ATP and ADP levels in young adults with type 1 diabetes. Front Physiol 2012 0.75
62 Overnight features of transcutaneous carbon dioxide measurement as predictors of metabolic status. Artif Intell Med 2007 0.75
63 Computer-assisted identification of multitrace electrophoretic patterns in differential display experiments. Electrophoresis 2007 0.75
64 Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis. Nat Commun 2016 0.75
65 Nocturnal transcutaneous carbon dioxide tension in postmenopausal estrogen users and non-users. Menopause Int 2009 0.75
66 State of vigilance, oestrogen replacement therapy, and lipid profile as modifiers of nocturnal movement-induced heart rate responses. Clin Physiol Funct Imaging 2003 0.75
67 Non-invasive respiratory monitoring during wakefulness and sleep in pre- and postmenopausal women. Respir Physiol Neurobiol 2005 0.75