Published in J Exp Biol on January 01, 2006
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Orientation saliency without visual cortex and target selection in archer fish. Proc Natl Acad Sci U S A (2010) 0.80
High speed coding for velocity by archerfish retinal ganglion cells. BMC Neurosci (2012) 0.77
The effect of steepness of temporal resource gradients on spatial root allocation. Plant Signal Behav (2011) 0.75
The Brain of the Archerfish Toxotes chatareus: A Nissl-Based Neuroanatomical Atlas and Catecholaminergic/Cholinergic Systems. Front Neuroanat (2016) 0.75
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Comparison of network-based pathway analysis methods. Trends Biotechnol (2004) 2.78
Comparison of various approaches to calculating the optimal hematocrit in vertebrates. J Appl Physiol (1985) (2012) 2.15
Metatool 5.0: fast and flexible elementary modes analysis. Bioinformatics (2006) 2.12
Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnol Bioeng (2002) 1.74
Computing the shortest elementary flux modes in genome-scale metabolic networks. Bioinformatics (2009) 1.54
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Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs. Mol Syst Biol (2011) 1.45
Game-theoretical approaches to studying the evolution of biochemical systems. Trends Biochem Sci (2005) 1.36
Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns. Genome Res (2009) 1.36
Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinformatics (2007) 1.32
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. BMC Bioinformatics (2005) 1.24
Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide. Nat Chem Biol (2013) 1.23
In silico evidence for gluconeogenesis from fatty acids in humans. PLoS Comput Biol (2011) 1.18
Structural robustness of metabolic networks with respect to multiple knockouts. J Theor Biol (2007) 1.11
The predictive start of hunting archer fish: a flexible and precise motor pattern performed with the kinematics of an escape C-start. J Exp Biol (2007) 1.11
Predicting three-dimensional target motion: how archer fish determine where to catch their dislodged prey. J Exp Biol (2002) 1.08
Topological analysis of metabolic networks based on Petri net theory. In Silico Biol (2003) 1.08
Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks. Curr Opin Biotechnol (2010) 1.04
Modeling and performance analysis of SAW reader systems for delay-line sensors. IEEE Trans Ultrason Ferroelectr Freq Control (2009) 1.04
Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis. BMC Syst Biol (2010) 1.02
Modelling the optimal timing in metabolic pathway activation-use of Pontryagin's Maximum Principle and role of the Golden section. Biosystems (2010) 1.00
Agent-based modeling approach of immune defense against spores of opportunistic human pathogenic fungi. Front Microbiol (2012) 0.99
Fruit-catching fish tune their fast starts to compensate for drift. Curr Biol (2008) 0.97
TassDB: a database of alternative tandem splice sites. Nucleic Acids Res (2006) 0.97
Small circuits for large tasks: high-speed decision-making in archerfish. Science (2008) 0.96
TassDB2 - A comprehensive database of subtle alternative splicing events. BMC Bioinformatics (2010) 0.93
Can single knockouts accurately single out gene functions? BMC Syst Biol (2008) 0.93
Evolutionary game theory: cells as players. Mol Biosyst (2014) 0.93
Inhibition of alanine aminotransferase in silico and in vivo promotes mitochondrial metabolism to impair malignant growth. J Biol Chem (2011) 0.91
Metabolic costs of amino acid and protein production in Escherichia coli. Biotechnol J (2013) 0.91
A method for classifying metabolites in topological pathway analyses based on minimization of pathway number. Biosystems (2003) 0.91
Photonic crystal light collectors in fish retina improve vision in turbid water. Science (2012) 0.89
Selective regulation of cellular processes via protein cascades acting as band-pass filters for time-limited oscillations. FEBS Lett (2005) 0.89
Fungal alternative splicing is associated with multicellular complexity and virulence: a genome-wide multi-species study. DNA Res (2013) 0.89
More than just a metabolic regulator--elucidation and validation of new targets of PdhR in Escherichia coli. BMC Syst Biol (2011) 0.88
Quantitative model of cell cycle arrest and cellular senescence in primary human fibroblasts. PLoS One (2012) 0.88
Comparative analysis of sequence features involved in the recognition of tandem splice sites. BMC Genomics (2008) 0.88
Highly potent 5-aminotetrahydropyrazolopyridines: enantioselective dopamine D3 receptor binding, functional selectivity, and analysis of receptor-ligand interactions. J Med Chem (2011) 0.86
An example of the prisoner's dilemma in biochemistry. Naturwissenschaften (2003) 0.86
NAD(+) biosynthesis and salvage--a phylogenetic perspective. FEBS J (2012) 0.86
Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes. Nat Commun (2013) 0.86
Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism. Gene (2007) 0.86
Selection of human tissue-specific elementary flux modes using gene expression data. Bioinformatics (2013) 0.85
Alternative splicing of mutually exclusive exons--a review. Biosystems (2013) 0.85
Detecting and investigating substrate cycles in a genome-scale human metabolic network. FEBS J (2012) 0.84
Modeling the seasonal adaptation of circadian clocks by changes in the network structure of the suprachiasmatic nucleus. PLoS Comput Biol (2012) 0.84
Pathway analysis of NAD+ metabolism. Biochem J (2011) 0.84
Model of tryptophan metabolism, readily scalable using tissue-specific gene expression data. J Biol Chem (2013) 0.83
A minimal model for decoding of time-limited Ca2+ oscillations. Biophys Chem (2005) 0.82
Continuous model for the rock-scissors-paper game between bacteriocin producing bacteria. J Math Biol (2007) 0.82
Visual search in hunting archerfish shares all hallmarks of human performance. J Exp Biol (2013) 0.81
Effect of substrate competition in kinetic models of metabolic networks. FEBS Lett (2013) 0.81
A theory of optimal differential gene expression. Biosystems (2004) 0.81
Topological analysis of metabolic networks based on petri net theory. Stud Health Technol Inform (2011) 0.80
Commemorating the 1913 Michaelis-Menten paper Die Kinetik der Invertinwirkung: three perspectives. FEBS J (2013) 0.80
Correlation between sequence, structure and function for trisporoid processing proteins in the model zygomycete Mucor mucedo. J Theor Biol (2012) 0.80
Modeling signal transduction in enzyme cascades with the concept of elementary flux modes. J Comput Biol (2009) 0.80
Under what conditions signal transduction pathways are highly flexible in response to external forcing? A case study on calcium oscillations. J Theor Biol (2003) 0.79
Theoretical study of lipid biosynthesis in wild-type Escherichia coli and in a protoplast-type L-form using elementary flux mode analysis. FEBS J (2010) 0.79
Theoretical model of the interactions between Ca2+, calmodulin and myosin light chain kinase. FEBS Lett (2005) 0.79
Evolutionary game theory: molecules as players. Mol Biosyst (2014) 0.79
Dim light vision--morphological and functional adaptations of the eye of the mormyrid fish, Gnathonemus petersii. J Physiol Paris (2008) 0.78
Exhaustive analysis of the modular structure of the spliceosomal assembly network: a Petri net approach. In Silico Biol (2010) 0.78
Detecting structural invariants in biological reaction networks. Methods Mol Biol (2012) 0.78
Biochemical frequency control by synchronisation of coupled repressilators: an in silico study of modules for circadian clock systems. Comput Intell Neurosci (2011) 0.78
Combinatorics of aliphatic amino acids. Naturwissenschaften (2010) 0.77
Quantification of the interaction between biomaterial surfaces and bacteria by 3-D modeling. Acta Biomater (2013) 0.77
Precision of archerfish C-starts is fully temperature compensated. J Exp Biol (2013) 0.77
Calculating as many fluxes as possible in underdetermined metabolic networks. Mol Biol Rep (2002) 0.77
Hands-on metabolism analysis of complex biochemical networks using elementary flux modes. Methods Enzymol (2011) 0.77
Archerfish shots are evolutionarily matched to prey adhesion. Curr Biol (2006) 0.77
Revisiting the thermodynamic theory of optimal ATP stoichiometries by analysis of various ATP-producing metabolic pathways. J Mol Evol (2010) 0.76
Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. Bioinformatics (2009) 0.76
Exhaustive analysis of the modular structure of the spliceosomal assembly network: a petri net approach. Stud Health Technol Inform (2011) 0.76
Special issue: integration of OMICs datasets into metabolic pathway analysis. Biosystems (2011) 0.76
GC content dependency of open reading frame prediction via stop codon frequencies. Gene (2012) 0.76
Jensen's inequality as a tool for explaining the effect of oscillations on the average cytosolic calcium concentration. Theory Biosci (2010) 0.76
Dynamic modeling of cooperative protein secretion in microorganism populations. Theor Popul Biol (2011) 0.76
Modeling temperature entrainment of circadian clocks using the Arrhenius equation and a reconstructed model from Chlamydomonas reinhardtii. J Biol Phys (2012) 0.75
Discrimination between random and non-random processes in early bacterial colonization on biomaterial surfaces: application of point pattern analysis. Biofouling (2014) 0.75
Against the stream: relevance of gluconeogenesis from fatty acids for natives of the arctic regions. Int J Circumpolar Health (2012) 0.75
Predicting the physiological role of circadian metabolic regulation in the green alga Chlamydomonas reinhardtii. PLoS One (2011) 0.75
Identification of SAW ID-tags using an FSCW interrogation unit and model-based evaluation. IEEE Trans Ultrason Ferroelectr Freq Control (2004) 0.75
Equality of average and steady-state levels in some nonlinear models of biological oscillations. Theory Biosci (2008) 0.75
On the evolutionary significance of the size and planarity of the proline ring. Naturwissenschaften (2012) 0.75