Published in Theory Biosci on February 16, 2010
Robust concentration and frequency control in oscillatory homeostats. PLoS One (2014) 0.76
Metabolic network structure determines key aspects of functionality and regulation. Nature (2002) 6.64
Comparison of network-based pathway analysis methods. Trends Biotechnol (2004) 2.78
Evolutionary establishment of moral and double moral standards through spatial interactions. PLoS Comput Biol (2010) 2.59
Comparison of various approaches to calculating the optimal hematocrit in vertebrates. J Appl Physiol (1985) (2012) 2.15
Metatool 5.0: fast and flexible elementary modes analysis. Bioinformatics (2006) 2.12
Modelling of simple and complex calcium oscillations. From single-cell responses to intercellular signalling. Eur J Biochem (2002) 1.93
Aspiring to the fittest and promotion of cooperation in the prisoner's dilemma game. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 1.75
Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnol Bioeng (2002) 1.74
Topology-independent impact of noise on cooperation in spatial public goods games. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 1.67
Computing the shortest elementary flux modes in genome-scale metabolic networks. Bioinformatics (2009) 1.54
Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinformatics (2009) 1.53
Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinformatics (2008) 1.51
Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs. Mol Syst Biol (2011) 1.45
Culturomics meets random fractal theory: insights into long-range correlations of social and natural phenomena over the past two centuries. J R Soc Interface (2012) 1.44
Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns. Genome Res (2009) 1.36
Game-theoretical approaches to studying the evolution of biochemical systems. Trends Biochem Sci (2005) 1.36
Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinformatics (2007) 1.32
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. BMC Bioinformatics (2005) 1.24
Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide. Nat Chem Biol (2013) 1.23
Defector-accelerated cooperativeness and punishment in public goods games with mutations. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 1.20
In silico evidence for gluconeogenesis from fatty acids in humans. PLoS Comput Biol (2011) 1.18
Synchronization transitions on scale-free neuronal networks due to finite information transmission delays. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 1.17
Structural robustness of metabolic networks with respect to multiple knockouts. J Theor Biol (2007) 1.11
The predictive start of hunting archer fish: a flexible and precise motor pattern performed with the kinematics of an escape C-start. J Exp Biol (2007) 1.11
Establishing the stochastic nature of intracellular calcium oscillations from experimental data. Biophys Chem (2007) 1.11
Delay-induced multiple stochastic resonances on scale-free neuronal networks. Chaos (2009) 1.10
Predicting three-dimensional target motion: how archer fish determine where to catch their dislodged prey. J Exp Biol (2002) 1.08
Topological analysis of metabolic networks based on Petri net theory. In Silico Biol (2003) 1.08
Impact of aging on the evolution of cooperation in the spatial prisoner's dilemma game. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 1.07
Transition from stochastic to deterministic behavior in calcium oscillations. Biophys J (2005) 1.07
Impact of critical mass on the evolution of cooperation in spatial public goods games. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 1.05
Modeling and performance analysis of SAW reader systems for delay-line sensors. IEEE Trans Ultrason Ferroelectr Freq Control (2009) 1.04
Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks. Curr Opin Biotechnol (2010) 1.04
Burst synchronization transitions in a neuronal network of subnetworks. Chaos (2011) 1.03
Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis. BMC Syst Biol (2010) 1.02
Spike latency and jitter of neuronal membrane patches with stochastic Hodgkin-Huxley channels. J Theor Biol (2009) 1.01
Modelling the optimal timing in metabolic pathway activation-use of Pontryagin's Maximum Principle and role of the Golden section. Biosystems (2010) 1.00
Agent-based modeling approach of immune defense against spores of opportunistic human pathogenic fungi. Front Microbiol (2012) 0.99
Functional connectivity in islets of Langerhans from mouse pancreas tissue slices. PLoS Comput Biol (2013) 0.98
Fruit-catching fish tune their fast starts to compensate for drift. Curr Biol (2008) 0.97
TassDB: a database of alternative tandem splice sites. Nucleic Acids Res (2006) 0.97
Spatial coherence resonance on diffusive and small-world networks of Hodgkin-Huxley neurons. Chaos (2008) 0.96
Phase diagrams for three-strategy evolutionary prisoner's dilemma games on regular graphs. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.96
Small circuits for large tasks: high-speed decision-making in archerfish. Science (2008) 0.96
TassDB2 - A comprehensive database of subtle alternative splicing events. BMC Bioinformatics (2010) 0.93
Can single knockouts accurately single out gene functions? BMC Syst Biol (2008) 0.93
Evolutionary game theory: cells as players. Mol Biosyst (2014) 0.93
Inhibition of alanine aminotransferase in silico and in vivo promotes mitochondrial metabolism to impair malignant growth. J Biol Chem (2011) 0.91
Metabolic costs of amino acid and protein production in Escherichia coli. Biotechnol J (2013) 0.91
A method for classifying metabolites in topological pathway analyses based on minimization of pathway number. Biosystems (2003) 0.91
Photonic crystal light collectors in fish retina improve vision in turbid water. Science (2012) 0.89
Selective regulation of cellular processes via protein cascades acting as band-pass filters for time-limited oscillations. FEBS Lett (2005) 0.89
Fungal alternative splicing is associated with multicellular complexity and virulence: a genome-wide multi-species study. DNA Res (2013) 0.89
More than just a metabolic regulator--elucidation and validation of new targets of PdhR in Escherichia coli. BMC Syst Biol (2011) 0.88
Quantitative model of cell cycle arrest and cellular senescence in primary human fibroblasts. PLoS One (2012) 0.88
Comparative analysis of sequence features involved in the recognition of tandem splice sites. BMC Genomics (2008) 0.88
Singing of Neoconocephalus robustus as an example of deterministic chaos in insects. J Biosci (2007) 0.88
Hunting archer fish match their take-off speed to distance from the future point of catch. J Exp Biol (2006) 0.88
Local dissipation and coupling properties of cellular oscillators: a case study on calcium oscillations. Bioelectrochemistry (2004) 0.87
Sustainability of culture-driven population dynamics. Theor Popul Biol (2010) 0.87
Role of sarcoplasmic reticulum and mitochondria in Ca2+ removal in airway myocytes. Biophys J (2004) 0.87
Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes. Nat Commun (2013) 0.86
NAD(+) biosynthesis and salvage--a phylogenetic perspective. FEBS J (2012) 0.86
An example of the prisoner's dilemma in biochemistry. Naturwissenschaften (2003) 0.86
Highly potent 5-aminotetrahydropyrazolopyridines: enantioselective dopamine D3 receptor binding, functional selectivity, and analysis of receptor-ligand interactions. J Med Chem (2011) 0.86
Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism. Gene (2007) 0.86
Alternative splicing of mutually exclusive exons--a review. Biosystems (2013) 0.85
Selection of human tissue-specific elementary flux modes using gene expression data. Bioinformatics (2013) 0.85
Prevalence of stochasticity in experimentally observed responses of pancreatic acinar cells to acetylcholine. Chaos (2009) 0.84
The influence of different InsP(3) receptor isoforms on Ca(2+) signaling in tracheal smooth muscle cells. Bioelectrochemistry (2002) 0.84
Modeling the seasonal adaptation of circadian clocks by changes in the network structure of the suprachiasmatic nucleus. PLoS Comput Biol (2012) 0.84
Pathway analysis of NAD+ metabolism. Biochem J (2011) 0.84
Detecting and investigating substrate cycles in a genome-scale human metabolic network. FEBS J (2012) 0.84
Cross-linguistic neuroimaging and dyslexia: a critical view. Cortex (2010) 0.83
Modelling of calcium handling in airway myocytes. Prog Biophys Mol Biol (2005) 0.83
Sensitivity and flexibility of regular and chaotic calcium oscillations. Biophys Chem (2003) 0.83
Model of tryptophan metabolism, readily scalable using tissue-specific gene expression data. J Biol Chem (2013) 0.83
Spatial coherence resonance in excitable biochemical media induced by internal noise. Biophys Chem (2007) 0.82
A minimal model for decoding of time-limited Ca2+ oscillations. Biophys Chem (2005) 0.82
Continuous model for the rock-scissors-paper game between bacteriocin producing bacteria. J Math Biol (2007) 0.82
Signal amplification in biological and electrical engineering systems: universal role of cascades. Biophys Chem (2009) 0.82
A theory of optimal differential gene expression. Biosystems (2004) 0.81
Importance of cell variability for calcium signaling in rat airway myocytes. Biophys Chem (2010) 0.81
Visual search in hunting archerfish shares all hallmarks of human performance. J Exp Biol (2013) 0.81
Effect of substrate competition in kinetic models of metabolic networks. FEBS Lett (2013) 0.81
Weak signal propagation through noisy feedforward neuronal networks. Neuroreport (2010) 0.80
Commemorating the 1913 Michaelis-Menten paper Die Kinetik der Invertinwirkung: three perspectives. FEBS J (2013) 0.80
Differential regulation of proteins by bursting calcium oscillations--a theoretical study. Biosystems (2005) 0.80
Topological analysis of metabolic networks based on petri net theory. Stud Health Technol Inform (2011) 0.80
Optimal network configuration for maximal coherence resonance in excitable systems. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.80
Correlation between sequence, structure and function for trisporoid processing proteins in the model zygomycete Mucor mucedo. J Theor Biol (2012) 0.80
Modeling signal transduction in enzyme cascades with the concept of elementary flux modes. J Comput Biol (2009) 0.80
Theoretical model of the interactions between Ca2+, calmodulin and myosin light chain kinase. FEBS Lett (2005) 0.79
Theoretical study of lipid biosynthesis in wild-type Escherichia coli and in a protoplast-type L-form using elementary flux mode analysis. FEBS J (2010) 0.79
Evolutionary game theory: molecules as players. Mol Biosyst (2014) 0.79
Under what conditions signal transduction pathways are highly flexible in response to external forcing? A case study on calcium oscillations. J Theor Biol (2003) 0.79